RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 NDUFA10O95299 355 aa13.59□□□□□ -0.23
USP38-201ENST00000307017 CYP21A2P08686 494 aa13.59□□□□□ -0.23
USP38-201ENST00000307017 MECOMQ03112 1051 aa13.59□□□□□ -0.23
USP38-201ENST00000307017 NME3Q13232 169 aa13.59□□□□□ -0.23
USP38-201ENST00000307017 CCDC51Q96ER9 411 aa13.59□□□□□ -0.23
USP38-201ENST00000307017 ATG3Q9NT62 314 aa13.59□□□□□ -0.23
USP38-201ENST00000307017 STK24Q9Y6E0 443 aa13.59□□□□□ -0.23
USP38-201ENST00000307017 STAT3P40763 770 aa13.59□□□□□ -0.23
USP38-201ENST00000307017 B4GALNT2Q8NHY0 566 aa13.59□□□□□ -0.23
USP38-201ENST00000307017 SH2D3AQ9BRG2 576 aa13.59□□□□□ -0.23
USP38-201ENST00000307017 ATP8A2Q9NTI2 1148 aa13.59□□□□□ -0.23
USP38-201ENST00000307017 KIF17Q9P2E2 1029 aa13.59□□□□□ -0.23
USP38-201ENST00000307017 PCDHA4Q9UN74 947 aa13.59□□□□□ -0.23
USP38-201ENST00000307017 TFR2Q9UP52 801 aa13.59□□□□□ -0.23
USP38-201ENST00000307017 MLH1P40692 756 aa13.58□□□□□ -0.23
USP38-201ENST00000307017 ABCB5Q2M3G0 1257 aa13.58□□□□□ -0.23
USP38-201ENST00000307017 NSUN7Q8NE18 718 aaKnown RBP13.58□□□□□ -0.23
USP38-201ENST00000307017 ADPGKQ9BRR6 497 aa13.58□□□□□ -0.23
USP38-201ENST00000307017 TMEM260Q9NX78 707 aa13.58□□□□□ -0.23
USP38-201ENST00000307017 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.58□□□□□ -0.23
USP38-201ENST00000307017 ABCC4O15439 1325 aa13.58□□□□□ -0.23
USP38-201ENST00000307017 WDR64B1ANS9 1081 aa13.58□□□□□ -0.24
USP38-201ENST00000307017 ZNF658Q5TYW1 1059 aaPredicted RBP13.58□□□□□ -0.24
USP38-201ENST00000307017 MIS12Q9H081 205 aa13.58□□□□□ -0.24
USP38-201ENST00000307017 TRIM10Q9UDY6 481 aa13.58□□□□□ -0.24
USP38-201ENST00000307017 GLE1Q53GS7 698 aaKnown RBP13.58□□□□□ -0.24
USP38-201ENST00000307017 COG4Q9H9E3 785 aa13.58□□□□□ -0.24
USP38-201ENST00000307017 SCINQ9Y6U3 715 aa13.58□□□□□ -0.24
USP38-201ENST00000307017 RASA4BC9J798 803 aa13.58□□□□□ -0.24
USP38-201ENST00000307017 FOXN1O15353 648 aa13.58□□□□□ -0.24
USP38-201ENST00000307017 RASA4O43374 803 aa13.58□□□□□ -0.24
USP38-201ENST00000307017 CYP2D6P10635 497 aa13.58□□□□□ -0.24
USP38-201ENST00000307017 PSMA2P25787 234 aa13.58□□□□□ -0.24
USP38-201ENST00000307017 IPO11Q9UI26 975 aaKnown RBP13.58□□□□□ -0.24
USP38-201ENST00000307017 AK9Q5TCS8 1911 aa13.58□□□□□ -0.24
USP38-201ENST00000307017 PP2D1A8MPX8 630 aa13.58□□□□□ -0.24
USP38-201ENST00000307017 ZRANB2O95218 330 aaKnown RBP eCLIP13.58□□□□□ -0.24
USP38-201ENST00000307017 PEX3P56589 373 aa13.58□□□□□ -0.24
USP38-201ENST00000307017 SLC27A3Q5K4L6 730 aa13.58□□□□□ -0.24
USP38-201ENST00000307017 RASSF3Q86WH2 238 aa13.58□□□□□ -0.24
USP38-201ENST00000307017 FAM49AQ9H0Q0 323 aaPredicted RBP13.58□□□□□ -0.24
USP38-201ENST00000307017 SCAF8Q9UPN6 1271 aaKnown RBP13.58□□□□□ -0.24
USP38-201ENST00000307017 ANP32DO95626 131 aa13.58□□□□□ -0.24
USP38-201ENST00000307017 RBM6P78332 1123 aaKnown RBP13.58□□□□□ -0.24
USP38-201ENST00000307017 APBA1Q02410 837 aa13.58□□□□□ -0.24
USP38-201ENST00000307017 MTF1Q14872 753 aa13.58□□□□□ -0.24
USP38-201ENST00000307017 EPM2AIP1Q7L775 607 aaPredicted RBP13.58□□□□□ -0.24
USP38-201ENST00000307017 ZNF467Q7Z7K2 595 aaPredicted RBP13.58□□□□□ -0.24
USP38-201ENST00000307017 CCNYL1Q8N7R7 359 aa13.58□□□□□ -0.24
USP38-201ENST00000307017 SLC26A7Q8TE54 656 aa13.58□□□□□ -0.24
USP38-201ENST00000307017 C1orf54Q8WWF1 131 aa13.58□□□□□ -0.24
USP38-201ENST00000307017 EDEM3Q9BZQ6 932 aa13.58□□□□□ -0.24
USP38-201ENST00000307017 LONP1P36776 959 aaKnown RBP13.57□□□□□ -0.24
USP38-201ENST00000307017 ZC3H12BQ5HYM0 836 aaKnown RBP13.57□□□□□ -0.24
USP38-201ENST00000307017 CHORDC1Q9UHD1 332 aaPredicted RBP13.57□□□□□ -0.24
USP38-201ENST00000307017 COL4A3BPQ9Y5P4 624 aa13.57□□□□□ -0.24
USP38-201ENST00000307017 FMNL1O95466 1100 aaPredicted RBP13.57□□□□□ -0.24
USP38-201ENST00000307017 GYS1P13807 737 aa13.57□□□□□ -0.24
USP38-201ENST00000307017 COBLL1Q53SF7 1204 aa13.57□□□□□ -0.24
USP38-201ENST00000307017 FRA10AC1Q70Z53 315 aa13.57□□□□□ -0.24
USP38-201ENST00000307017 TAGAPQ8N103 731 aa13.57□□□□□ -0.24
USP38-201ENST00000307017 CENPKQ9BS16 269 aa13.57□□□□□ -0.24
USP38-201ENST00000307017 MYO1CO00159 1063 aa13.57□□□□□ -0.24
USP38-201ENST00000307017 TRIM66O15016 1216 aa13.57□□□□□ -0.24
USP38-201ENST00000307017 ERFEQ4G0M1 354 aa13.57□□□□□ -0.24
USP38-201ENST00000307017 LMBRD2Q68DH5 695 aaPredicted RBP13.57□□□□□ -0.24
USP38-201ENST00000307017 SH2D3CQ8N5H7 860 aa13.57□□□□□ -0.24
USP38-201ENST00000307017 NGRNQ9NPE2 291 aaKnown RBP13.57□□□□□ -0.24
USP38-201ENST00000307017 DBNLQ9UJU6 430 aaKnown RBP13.57□□□□□ -0.24
USP38-201ENST00000307017 PJA2O43164 708 aa13.57□□□□□ -0.24
USP38-201ENST00000307017 RAD23BP54727 409 aa13.57□□□□□ -0.24
USP38-201ENST00000307017 AP1B1Q10567 949 aa13.57□□□□□ -0.24
USP38-201ENST00000307017 CCDC144BQ3MJ40 725 aa13.57□□□□□ -0.24
USP38-201ENST00000307017 NCAPGQ9BPX3 1015 aa13.57□□□□□ -0.24
USP38-201ENST00000307017 POTEMA6NI47 508 aa13.57□□□□□ -0.24
USP38-201ENST00000307017 ENO1P06733 434 aaKnown RBP13.57□□□□□ -0.24
USP38-201ENST00000307017 CROCCP2Q86T23 111 aa13.57□□□□□ -0.24
USP38-201ENST00000307017 SYT2Q8N9I0 419 aaPredicted RBP13.57□□□□□ -0.24
USP38-201ENST00000307017 SNX19Q92543 992 aa13.57□□□□□ -0.24
USP38-201ENST00000307017 SPZ1Q9BXG8 430 aa13.57□□□□□ -0.24
USP38-201ENST00000307017 MARCOQ9UEW3 520 aaPredicted RBP13.57□□□□□ -0.24
USP38-201ENST00000307017 AURKCQ9UQB9 309 aa13.57□□□□□ -0.24
USP38-201ENST00000307017 CSADQ9Y600 493 aa13.57□□□□□ -0.24
USP38-201ENST00000307017 CFAP69A5D8W1 941 aa13.56□□□□□ -0.24
USP38-201ENST00000307017 NLRP11P59045 1033 aaKnown RBP13.56□□□□□ -0.24
USP38-201ENST00000307017 YWHAEP62258 255 aaKnown RBP13.56□□□□□ -0.24
USP38-201ENST00000307017 ATG16L1Q676U5 607 aa13.56□□□□□ -0.24
USP38-201ENST00000307017 SMIM5Q71RC9 77 aa13.56□□□□□ -0.24
USP38-201ENST00000307017 CSRNP1Q96S65 589 aa13.56□□□□□ -0.24
USP38-201ENST00000307017 A6NNZ2 444 aa13.56□□□□□ -0.24
USP38-201ENST00000307017 DGKIO75912 1065 aa13.56□□□□□ -0.24
USP38-201ENST00000307017 TUBB8Q3ZCM7 444 aa13.56□□□□□ -0.24
USP38-201ENST00000307017 USPL1Q5W0Q7 1092 aa13.56□□□□□ -0.24
USP38-201ENST00000307017 NUP93Q8N1F7 819 aa13.56□□□□□ -0.24
USP38-201ENST00000307017 OXER1Q8TDS5 423 aa13.56□□□□□ -0.24
USP38-201ENST00000307017 ZNF277Q9NRM2 450 aaPredicted RBP13.56□□□□□ -0.24
USP38-201ENST00000307017 PRPSAP2O60256 369 aa13.56□□□□□ -0.24
USP38-201ENST00000307017 DPP9Q86TI2 863 aa13.56□□□□□ -0.24
USP38-201ENST00000307017 RERGLQ9H628 205 aa13.56□□□□□ -0.24
USP38-201ENST00000307017 ANGPTL2Q9UKU9 493 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms