RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 CCND1P24385 295 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 HNRNPH1P31943 449 aaKnown RBP6.91□□□□□ -1.3
VPS35-201ENST00000299138 KIF11P52732 1056 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 TIMM10P62072 90 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 PDE4DQ08499 809 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 DYNC1I2Q13409 638 aaKnown RBP6.91□□□□□ -1.3
VPS35-201ENST00000299138 SLC39A6Q13433 755 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 POTEBQ6S5H4 581 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 ARMC2Q8NEN0 867 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 OMA1Q96E52 524 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 FTOQ9C0B1 505 aaKnown RBP eCLIP6.91□□□□□ -1.3
VPS35-201ENST00000299138 NDST4Q9H3R1 872 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 AGTPBP1Q9UPW5 1226 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 C5orf60A6NFR6 353 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 GNGT2O14610 69 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 ADAMTS2O95450 1211 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 PROSER3Q2NL68 480 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 FAM186BQ8IYM0 893 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 ST13P4Q8IZP2 240 aaPredicted RBP6.91□□□□□ -1.3
VPS35-201ENST00000299138 UBL4BQ8N7F7 174 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 NEK9Q8TD19 979 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 ACTRT1Q8TDG2 376 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 POLE3Q9NRF9 147 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 INTS13Q9NVM9 706 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 KBTBD4Q9NVX7 518 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 BSDC1Q9NW68 430 aaPredicted RBP6.91□□□□□ -1.3
VPS35-201ENST00000299138 RBAK-RBAKDNI3L0D1 243 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 GPTP24298 496 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 ABCD1P33897 745 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 CTNNA1P35221 906 aaKnown RBP6.91□□□□□ -1.3
VPS35-201ENST00000299138 TRPC1P48995 793 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 PPP2R2AP63151 447 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 RHOT2Q8IXI1 618 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 KLHL7Q8IXQ5 586 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 SH3TC2Q8TF17 1288 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 ZCCHC17Q9NP64 241 aaKnown RBP6.91□□□□□ -1.3
VPS35-201ENST00000299138 M0R2C6 588 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 SMAPO00193 183 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 LMNB1P20700 586 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 IL6STP40189 918 aaPredicted RBP6.91□□□□□ -1.3
VPS35-201ENST00000299138 MMEL1Q495T6 779 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 EPHA10Q5JZY3 1008 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 ACRBPQ8NEB7 543 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 ATP6V0A1Q93050 837 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 NRBF2Q96F24 287 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 GDF3Q9NR23 364 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 TRPC5Q9UL62 973 aaPredicted RBP6.91□□□□□ -1.3
VPS35-201ENST00000299138 PCDHA13Q9Y5I0 950 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 TMEM232C9JQI7 657 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 ALCAMQ13740 583 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 RCN2Q14257 317 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 TSC22D1Q15714 1073 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 HEATR3Q7Z4Q2 680 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 IQCKQ8N0W5 287 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 PROCA1Q8NCQ7 364 aaPredicted RBP6.9□□□□□ -1.3
VPS35-201ENST00000299138 GRK7Q8WTQ7 553 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 CHMP6Q96FZ7 201 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 CNOT6LQ96LI5 555 aaKnown RBP6.9□□□□□ -1.3
VPS35-201ENST00000299138 MMS19Q96T76 1030 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 PSMB7Q99436 277 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 DLG5Q8TDM6 1919 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 ASAP2O43150 1006 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 LSP1P33241 339 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 GUCY2FP51841 1108 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 FMR1Q06787 632 aaKnown RBP eCLIP6.9□□□□□ -1.33e-7■□□□□ 8.4
VPS35-201ENST00000299138 KCNA1Q09470 495 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 PTGDRQ13258 359 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 PARP9Q8IXQ6 854 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 TRMT44Q8IYL2 757 aaKnown RBP6.9□□□□□ -1.3
VPS35-201ENST00000299138 SCYL3Q8IZE3 742 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 MYOCDQ8IZQ8 938 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 MAB21L3Q8N8X9 362 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 NFATC2IPQ8NCF5 419 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 ENO4A6NNW6 628 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 WFS1O76024 890 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 TTC4O95801 387 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 ATP5BP06576 529 aaKnown RBP6.9□□□□□ -1.3
VPS35-201ENST00000299138 FGRP09769 529 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 FXR1P51114 621 aaKnown RBP eCLIP6.9□□□□□ -1.3
VPS35-201ENST00000299138 KRT71Q3SY84 523 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 PDXDC1Q6P996 788 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 RIBC1Q8N443 379 aaPredicted RBP6.9□□□□□ -1.3
VPS35-201ENST00000299138 SPOCK2Q92563 424 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 HPS3Q969F9 1004 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 USP40Q9NVE5 1235 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 ZSCAN32Q9NX65 697 aa6.9□□□□□ -1.3
VPS35-201ENST00000299138 TRMT112Q9UI30 125 aaKnown RBP6.9□□□□□ -1.3
VPS35-201ENST00000299138 CLCN2P51788 898 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 CTSWP56202 376 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 MRPS25P82663 173 aaKnown RBP6.9□□□□□ -1.31
VPS35-201ENST00000299138 PLIN5Q00G26 463 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 MYBPC2Q14324 1141 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 ASIC2Q16515 512 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 LZICQ8WZA0 190 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 RNPEPQ9H4A4 650 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 EHMT1Q9H9B1 1298 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 PNMA2Q9UL42 364 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 ORC6Q9Y5N6 252 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 KDM3BQ7LBC6 1761 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 MINDY4BA8MYZ0 360 aa6.9□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms