RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 RAD54LQ92698 747 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 TUBB6Q9BUF5 446 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 NXF1Q9UBU9 619 aaKnown RBP11.59□□□□□ -0.55
CD44-201ENST00000263398 TRPC5Q9UL62 973 aaPredicted RBP11.59□□□□□ -0.55
CD44-201ENST00000263398 PLAAQ9Y263 795 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 KIF28PB7ZC32 967 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 PFDN6O15212 129 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 NR3C1P04150 777 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 SAT1P21673 171 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 GYS2P54840 703 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 FOXO4P98177 505 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 PDCLQ13371 301 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 MTERF2Q49AM1 385 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 RASIP1Q5U651 963 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 PPP1R18Q6NYC8 613 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 SFR1Q86XK3 245 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 GBP7Q8N8V2 638 aaPredicted RBP11.59□□□□□ -0.55
CD44-201ENST00000263398 EDEM3Q9BZQ6 932 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 BARHL2Q9NY43 387 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 K7ERI5 159 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 SERPINB6P35237 376 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 MRPS25P82663 173 aaKnown RBP11.59□□□□□ -0.55
CD44-201ENST00000263398 FAM47CQ5HY64 1035 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 PDCD7Q8N8D1 485 aaKnown RBP11.59□□□□□ -0.55
CD44-201ENST00000263398 CPVLQ9H3G5 476 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 PCDHA6Q9UN73 950 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 PCDHA8Q9Y5H6 950 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 SCINQ9Y6U3 715 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 PNPLA7Q6ZV29 1317 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 CDC42BPGQ6DT37 1551 aa11.58□□□□□ -0.55
CD44-201ENST00000263398 RIMBP3CA6NJZ7 1639 aa11.58□□□□□ -0.55
CD44-201ENST00000263398 RIMBP3BA6NNM3 1639 aa11.58□□□□□ -0.55
CD44-201ENST00000263398 PIK3C2BO00750 1634 aa11.58□□□□□ -0.55
CD44-201ENST00000263398 RIMBP3Q9UFD9 1639 aa11.58□□□□□ -0.55
CD44-201ENST00000263398 SETBP1Q9Y6X0 1596 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 GOLGA8QA0A0J9YX86 632 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 GOLGA8OA6NCC3 632 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 SFI1A8K8P3 1242 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 GOLGA8NF8WBI6 632 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 PSAPP07602 524 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 CCND2P30279 289 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 ECE1P42892 770 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 SCARF1Q14162 830 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 RCN2Q14257 317 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 SLFN12LQ6IEE8 588 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 SNX24Q9Y343 169 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 SYNJ2BP-COX16A0A087WUM0 186 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 PALM3A6NDB9 673 aaPredicted RBP11.58□□□□□ -0.56
CD44-201ENST00000263398 MYO1CO00159 1063 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 ORC4O43929 436 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 ARL4AP40617 200 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 DYNLT1P63172 113 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 COASYQ13057 564 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 PRPSAP1Q14558 356 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 RBBP5Q15291 538 aaKnown RBP11.58□□□□□ -0.56
CD44-201ENST00000263398 BBS9Q3SYG4 887 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 NUGGCQ68CJ6 796 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 PDXDC2PQ6P474 469 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 CENPUQ71F23 418 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 SESTD1Q86VW0 696 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 XXYLT1Q8NBI6 393 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 PIGOQ8TEQ8 1089 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 OSBPL9Q96SU4 736 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 COX16Q9P0S2 106 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 NUB1Q9Y5A7 615 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 UTYO14607 1347 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 IPO5O00410 1097 aaKnown RBP11.58□□□□□ -0.56
CD44-201ENST00000263398 FOXN1O15353 648 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 NMT2O60551 498 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 ACTN1P12814 892 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 EIF2AK2P19525 551 aaKnown RBP11.58□□□□□ -0.56
CD44-201ENST00000263398 RFC1P35251 1148 aaPredicted RBP11.58□□□□□ -0.56
CD44-201ENST00000263398 PEX3P56589 373 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 KCNB1Q14721 858 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 TRIP13Q15645 432 aaPredicted RBP11.58□□□□□ -0.56
CD44-201ENST00000263398 FAM133BQ5BKY9 247 aaKnown RBP11.58□□□□□ -0.56
CD44-201ENST00000263398 METTL16Q86W50 562 aaKnown RBP11.58□□□□□ -0.56
CD44-201ENST00000263398 CD209Q9NNX6 404 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 MRFAP1Q9Y605 127 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 MORC2Q9Y6X9 1032 aaPredicted RBP11.58□□□□□ -0.56
CD44-201ENST00000263398 CPS1P31327 1500 aa11.58□□□□□ -0.56
CD44-201ENST00000263398 GOLGA8IPA6NC78 632 aa11.57□□□□□ -0.56
CD44-201ENST00000263398 GOLGA8JA6NMD2 632 aa11.57□□□□□ -0.56
CD44-201ENST00000263398 E9PMD0 336 aa11.57□□□□□ -0.56
CD44-201ENST00000263398 ZRANB2O95218 330 aaKnown RBP eCLIP11.57□□□□□ -0.56
CD44-201ENST00000263398 ASNSP08243 561 aa11.57□□□□□ -0.56
CD44-201ENST00000263398 ITKQ08881 620 aa11.57□□□□□ -0.56
CD44-201ENST00000263398 DARS2Q6PI48 645 aaKnown RBP11.57□□□□□ -0.56
CD44-201ENST00000263398 ATG9AQ7Z3C6 839 aa11.57□□□□□ -0.56
CD44-201ENST00000263398 SLC44A5Q8NCS7 719 aa11.57□□□□□ -0.56
CD44-201ENST00000263398 CEP95Q96GE4 821 aa11.57□□□□□ -0.56
CD44-201ENST00000263398 CALR3Q96L12 384 aaKnown RBP11.57□□□□□ -0.56
CD44-201ENST00000263398 NARFQ9UHQ1 456 aa11.57□□□□□ -0.56
CD44-201ENST00000263398 IPO11Q9UI26 975 aaKnown RBP11.57□□□□□ -0.56
CD44-201ENST00000263398 ACSL3O95573 720 aa11.57□□□□□ -0.56
CD44-201ENST00000263398 GH2P01242 217 aa11.57□□□□□ -0.56
CD44-201ENST00000263398 NPR1P16066 1061 aa11.57□□□□□ -0.56
CD44-201ENST00000263398 GUCY2CP25092 1073 aa11.57□□□□□ -0.56
CD44-201ENST00000263398 KNOP1Q1ED39 458 aaKnown RBP11.57□□□□□ -0.56
CD44-201ENST00000263398 MMEL1Q495T6 779 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms