RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 CELF4Q9BZC1 486 aaKnown RBP13.82□□□□□ -0.2
LIG1-201ENST00000263274 RGL1Q9NZL6 768 aa13.82□□□□□ -0.2
LIG1-201ENST00000263274 PKD2L1Q9P0L9 805 aa13.82□□□□□ -0.2
LIG1-201ENST00000263274 DOT1LQ8TEK3 1739 aa13.82□□□□□ -0.2
LIG1-201ENST00000263274 PJA2O43164 708 aa13.82□□□□□ -0.2
LIG1-201ENST00000263274 GDF11O95390 407 aa13.82□□□□□ -0.2
LIG1-201ENST00000263274 H2AFZP0C0S5 128 aa13.82□□□□□ -0.2
LIG1-201ENST00000263274 UCHL3P15374 230 aa13.82□□□□□ -0.2
LIG1-201ENST00000263274 KCNA1Q09470 495 aa13.82□□□□□ -0.2
LIG1-201ENST00000263274 VPS72Q15906 364 aa13.82□□□□□ -0.2
LIG1-201ENST00000263274 H2AFVQ71UI9 128 aa13.82□□□□□ -0.2
LIG1-201ENST00000263274 KIAA0825Q8IV33 1275 aa13.82□□□□□ -0.2
LIG1-201ENST00000263274 ERMNQ8TAM6 284 aa13.82□□□□□ -0.2
LIG1-201ENST00000263274 ZNF622Q969S3 477 aaKnown RBP eCLIP13.82□□□□□ -0.27e-7■■□□□ 12.2
LIG1-201ENST00000263274 CCDC113Q9H0I3 377 aa13.82□□□□□ -0.2
LIG1-201ENST00000263274 GCNT4Q9P109 453 aa13.82□□□□□ -0.2
LIG1-201ENST00000263274 SART1O43290 800 aaKnown RBP13.82□□□□□ -0.2
LIG1-201ENST00000263274 DAPK3O43293 454 aa13.82□□□□□ -0.2
LIG1-201ENST00000263274 EDIL3O43854 480 aa13.82□□□□□ -0.2
LIG1-201ENST00000263274 FLOT1O75955 427 aa13.82□□□□□ -0.2
LIG1-201ENST00000263274 EPB41P11171 864 aaKnown RBP13.82□□□□□ -0.2
LIG1-201ENST00000263274 CYP2J2P51589 502 aa13.82□□□□□ -0.2
LIG1-201ENST00000263274 ASTE1Q2TB18 679 aaPredicted RBP13.82□□□□□ -0.2
LIG1-201ENST00000263274 TMEM119Q4V9L6 283 aa13.82□□□□□ -0.2
LIG1-201ENST00000263274 MYCT1Q8N699 235 aa13.82□□□□□ -0.2
LIG1-201ENST00000263274 RBM17Q96I25 401 aaKnown RBP13.82□□□□□ -0.2
LIG1-201ENST00000263274 DHX36Q9H2U1 1008 aaKnown RBP13.82□□□□□ -0.2
LIG1-201ENST00000263274 ITGA4P13612 1032 aa13.81□□□□□ -0.2
LIG1-201ENST00000263274 TMOD1P28289 359 aa13.81□□□□□ -0.2
LIG1-201ENST00000263274 LSP1P33241 339 aa13.81□□□□□ -0.2
LIG1-201ENST00000263274 NFIAQ12857 509 aa13.81□□□□□ -0.2
LIG1-201ENST00000263274 TBC1D10BQ4KMP7 808 aaPredicted RBP13.81□□□□□ -0.2
LIG1-201ENST00000263274 SLFN13Q68D06 897 aa13.81□□□□□ -0.2
LIG1-201ENST00000263274 USP38Q8NB14 1042 aa13.81□□□□□ -0.2
LIG1-201ENST00000263274 TBC1D16Q8TBP0 767 aa13.81□□□□□ -0.2
LIG1-201ENST00000263274 CEP63Q96MT8 703 aa13.81□□□□□ -0.2
LIG1-201ENST00000263274 REEP2Q9BRK0 252 aa13.81□□□□□ -0.2
LIG1-201ENST00000263274 CNTNAP4Q9C0A0 1308 aa13.81□□□□□ -0.2
LIG1-201ENST00000263274 AHDC1Q5TGY3 1603 aaPredicted RBP13.81□□□□□ -0.2
LIG1-201ENST00000263274 CLSTN1O94985 981 aa13.81□□□□□ -0.2
LIG1-201ENST00000263274 FAM13AO94988 1023 aa13.81□□□□□ -0.2
LIG1-201ENST00000263274 KIF4AO95239 1232 aa13.81□□□□□ -0.2
LIG1-201ENST00000263274 KRT13P13646 458 aa13.81□□□□□ -0.2
LIG1-201ENST00000263274 CTTNQ14247 550 aaKnown RBP13.81□□□□□ -0.2
LIG1-201ENST00000263274 CDC37Q16543 378 aaPredicted RBP13.81□□□□□ -0.2
LIG1-201ENST00000263274 IFI16Q16666 785 aaKnown RBP13.81□□□□□ -0.2
LIG1-201ENST00000263274 KRT71Q3SY84 523 aa13.81□□□□□ -0.2
LIG1-201ENST00000263274 GLE1Q53GS7 698 aaKnown RBP13.81□□□□□ -0.2
LIG1-201ENST00000263274 MEI1Q5TIA1 1274 aa13.81□□□□□ -0.2
LIG1-201ENST00000263274 B4GALNT4Q76KP1 1039 aa13.81□□□□□ -0.2
LIG1-201ENST00000263274 CATSPER3Q86XQ3 398 aa13.81□□□□□ -0.2
LIG1-201ENST00000263274 TBC1D22AQ8WUA7 517 aa13.81□□□□□ -0.2
LIG1-201ENST00000263274 ARAP2Q8WZ64 1704 aa13.81□□□□□ -0.2
LIG1-201ENST00000263274 FAM212AQ96EL1 285 aa13.81□□□□□ -0.2
LIG1-201ENST00000263274 A0A1B0GUL6 1792 aa13.81□□□□□ -0.2
LIG1-201ENST00000263274 LRRN2O75325 713 aa13.8□□□□□ -0.2
LIG1-201ENST00000263274 ZNF211Q13398 564 aaPredicted RBP13.8□□□□□ -0.2
LIG1-201ENST00000263274 CYP2W1Q8TAV3 490 aa13.8□□□□□ -0.2
LIG1-201ENST00000263274 TMX4Q9H1E5 349 aaPredicted RBP13.8□□□□□ -0.2
LIG1-201ENST00000263274 RNF14Q9UBS8 474 aa13.8□□□□□ -0.2
LIG1-201ENST00000263274 RGS17Q9UGC6 210 aaPredicted RBP13.8□□□□□ -0.2
LIG1-201ENST00000263274 NOVA2Q9UNW9 492 aaKnown RBP13.8□□□□□ -0.2
LIG1-201ENST00000263274 SNED1Q8TER0 1413 aa13.8□□□□□ -0.2
LIG1-201ENST00000263274 SETQ01105 290 aaPredicted RBP13.8□□□□□ -0.2
LIG1-201ENST00000263274 PPP4R3AQ6IN85 833 aa13.8□□□□□ -0.2
LIG1-201ENST00000263274 METTL13Q8N6R0 699 aa13.8□□□□□ -0.2
LIG1-201ENST00000263274 EDEM3Q9BZQ6 932 aa13.8□□□□□ -0.2
LIG1-201ENST00000263274 CHORDC1Q9UHD1 332 aaPredicted RBP13.8□□□□□ -0.2
LIG1-201ENST00000263274 ATP8A1Q9Y2Q0 1164 aa13.8□□□□□ -0.2
LIG1-201ENST00000263274 GOLGA6L7A0A1B0GV03 622 aa13.8□□□□□ -0.2
LIG1-201ENST00000263274 MYO1FO00160 1098 aa13.8□□□□□ -0.2
LIG1-201ENST00000263274 TTI1O43156 1089 aa13.8□□□□□ -0.2
LIG1-201ENST00000263274 LCA5LO95447 670 aa13.8□□□□□ -0.2
LIG1-201ENST00000263274 CCDC172P0C7W6 258 aa13.8□□□□□ -0.2
LIG1-201ENST00000263274 EEF2P13639 858 aaKnown RBP13.8□□□□□ -0.2
LIG1-201ENST00000263274 ERVK-9P63128 1117 aa13.8□□□□□ -0.2
LIG1-201ENST00000263274 ARHGAP4P98171 946 aa13.8□□□□□ -0.2
LIG1-201ENST00000263274 KNOP1Q1ED39 458 aaKnown RBP13.8□□□□□ -0.2
LIG1-201ENST00000263274 GPATCH4Q5T3I0 446 aaKnown RBP13.8□□□□□ -0.2
LIG1-201ENST00000263274 GLYCTKQ8IVS8 523 aa13.8□□□□□ -0.2
LIG1-201ENST00000263274 ZFPM1Q8IX07 1006 aa13.8□□□□□ -0.2
LIG1-201ENST00000263274 TAF1DQ9H5J8 278 aaPredicted RBP13.8□□□□□ -0.2
LIG1-201ENST00000263274 CXorf56Q9H5V9 222 aa13.8□□□□□ -0.2
LIG1-201ENST00000263274 NAGPAQ9UK23 515 aa13.8□□□□□ -0.2
LIG1-201ENST00000263274 NOC2LQ9Y3T9 749 aaKnown RBP13.8□□□□□ -0.2
LIG1-201ENST00000263274 NHSL1Q5SYE7 1610 aa13.79□□□□□ -0.2
LIG1-201ENST00000263274 PGRMC1O00264 195 aaKnown RBP13.79□□□□□ -0.2
LIG1-201ENST00000263274 CALUO43852 315 aaPredicted RBP13.79□□□□□ -0.2
LIG1-201ENST00000263274 AKAP3O75969 853 aa13.79□□□□□ -0.2
LIG1-201ENST00000263274 CFBP00751 764 aa13.79□□□□□ -0.2
LIG1-201ENST00000263274 MAP2K2P36507 400 aa13.79□□□□□ -0.2
LIG1-201ENST00000263274 HDLBPQ00341 1268 aaKnown RBP13.79□□□□□ -0.2
LIG1-201ENST00000263274 MKRN4PQ13434 485 aaPredicted RBP13.79□□□□□ -0.2
LIG1-201ENST00000263274 ZC2HC1CQ53FD0 456 aaPredicted RBP13.79□□□□□ -0.2
LIG1-201ENST00000263274 SYCP3Q8IZU3 236 aa13.79□□□□□ -0.2
LIG1-201ENST00000263274 CAVIN3Q969G5 261 aa13.79□□□□□ -0.2
LIG1-201ENST00000263274 ATP6V1G3Q96LB4 118 aa13.79□□□□□ -0.2
LIG1-201ENST00000263274 PLCD4Q9BRC7 762 aa13.79□□□□□ -0.2
LIG1-201ENST00000263274 FBXL5Q9UKA1 691 aa13.79□□□□□ -0.2
LIG1-201ENST00000263274 hCG_1984214I3L0E3 225 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms