RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 SCYL3Q8IZE3 742 aa14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 CCDC155Q8N6L0 562 aa14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 BAP1Q92560 729 aa14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 RPAP3Q9H6T3 665 aaPredicted RBP14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 PARVGQ9HBI0 331 aa14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 AS3MTQ9HBK9 375 aa14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 HOMER2Q9NSB8 354 aa14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 ARGLU1Q9NWB6 273 aaPredicted RBP14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 TRIM10Q9UDY6 481 aa14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 ARMCX3Q9UH62 379 aaPredicted RBP14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 DGKZQ13574 1117 aa14.24□□□□□ -0.13
SPTLC1-201ENST00000262554 STXBP4Q6ZWJ1 553 aa14.24□□□□□ -0.13
SPTLC1-201ENST00000262554 RSRC2Q7L4I2 434 aaKnown RBP14.24□□□□□ -0.13
SPTLC1-201ENST00000262554 SRGAP1Q7Z6B7 1085 aa14.24□□□□□ -0.13
SPTLC1-201ENST00000262554 APOBEC3FQ8IUX4 373 aaKnown RBP14.24□□□□□ -0.13
SPTLC1-201ENST00000262554 SYTL5Q8TDW5 730 aaPredicted RBP14.24□□□□□ -0.13
SPTLC1-201ENST00000262554 FBXO41Q8TF61 875 aa14.24□□□□□ -0.13
SPTLC1-201ENST00000262554 LXNQ9BS40 222 aa14.24□□□□□ -0.13
SPTLC1-201ENST00000262554 LSM14BQ9BX40 385 aaKnown RBP14.24□□□□□ -0.13
SPTLC1-201ENST00000262554 KCNH7Q9NS40 1196 aa14.24□□□□□ -0.13
SPTLC1-201ENST00000262554 ARHGAP20Q9P2F6 1191 aa14.24□□□□□ -0.13
SPTLC1-201ENST00000262554 SEL1LQ9UBV2 794 aa14.24□□□□□ -0.13
SPTLC1-201ENST00000262554 ODF2LQ9ULJ1 636 aa14.24□□□□□ -0.13
SPTLC1-201ENST00000262554 ARHGEF35A5YM69 484 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 SFI1A8K8P3 1242 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 DDX39AO00148 427 aaKnown RBP14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 ZBTB39O15060 712 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 SLC16A3O15427 465 aaKnown RBP14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 AKR1B10O60218 316 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 USO1O60763 962 aaKnown RBP14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 NR3C1P04150 777 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 PLEKP08567 350 aaPredicted RBP14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 EIF4A3P38919 411 aaKnown RBP14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 KIF11P52732 1056 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 VAV2P52735 878 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 CHMP4BP1P59074 171 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 TUBB4BP68371 445 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 KCNH2Q12809 1159 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 KIF5AQ12840 1032 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 SPP2Q13103 211 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 WHAMMP3Q1A5X7 153 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 TKFCQ3LXA3 575 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 MUM1L1Q5H9M0 696 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 TEX35Q5T0J7 233 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 MIER3Q7Z3K6 550 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 GPR161Q8N6U8 529 aaKnown RBP14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 BANK1Q8NDB2 785 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 IL31RAQ8NI17 732 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 RABGGTAQ92696 567 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 SYN2Q92777 582 aaPredicted RBP14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 METTL14Q9HCE5 456 aaKnown RBP14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 PICK1Q9NRD5 415 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 UBIAD1Q9Y5Z9 338 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 UBE4BO95155 1302 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 LCA5LO95447 670 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 EPB41P11171 864 aaKnown RBP14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 NUBP1P53384 320 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 BACE1P56817 501 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 CYP27A1Q02318 531 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 SFMBT2Q5VUG0 894 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 IFIH1Q9BYX4 1025 aaKnown RBP14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 AGO4Q9HCK5 861 aaKnown RBP14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 POLD4Q9HCU8 107 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 JADE2Q9NQC1 790 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 PKD2L1Q9P0L9 805 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 WRAP73Q9P2S5 460 aaPredicted RBP14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 ZNF112Q9UJU3 913 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 ASTN1O14525 1302 aa14.23□□□□□ -0.13
SPTLC1-201ENST00000262554 SSU72P8A0A1W2PR75 194 aa14.22□□□□□ -0.13
SPTLC1-201ENST00000262554 VWA5AO00534 786 aa14.22□□□□□ -0.13
SPTLC1-201ENST00000262554 NOL4O94818 638 aa14.22□□□□□ -0.13
SPTLC1-201ENST00000262554 AFPP02771 609 aaKnown RBP14.22□□□□□ -0.13
SPTLC1-201ENST00000262554 P4HBP07237 508 aaKnown RBP14.22□□□□□ -0.13
SPTLC1-201ENST00000262554 XRCC5P13010 732 aaKnown RBP14.22□□□□□ -0.13
SPTLC1-201ENST00000262554 ZNF131P52739 623 aa14.22□□□□□ -0.13
SPTLC1-201ENST00000262554 RPS6P62753 249 aaKnown RBP14.22□□□□□ -0.13
SPTLC1-201ENST00000262554 MTMR1Q13613 665 aa14.22□□□□□ -0.13
SPTLC1-201ENST00000262554 R3HDM1Q15032 1099 aaKnown RBP14.22□□□□□ -0.13
SPTLC1-201ENST00000262554 RNF207Q6ZRF8 634 aa14.22□□□□□ -0.13
SPTLC1-201ENST00000262554 TXLNBQ8N3L3 684 aa14.22□□□□□ -0.13
SPTLC1-201ENST00000262554 ZNF280CQ8ND82 737 aa14.22□□□□□ -0.13
SPTLC1-201ENST00000262554 TRERF1Q96PN7 1200 aa14.22□□□□□ -0.13
SPTLC1-201ENST00000262554 WRNIP1Q96S55 665 aa14.22□□□□□ -0.13
SPTLC1-201ENST00000262554 CRACR2AQ9BSW2 395 aa14.22□□□□□ -0.13
SPTLC1-201ENST00000262554 LACRTQ9GZZ8 138 aa14.22□□□□□ -0.13
SPTLC1-201ENST00000262554 ZNF541Q9H0D2 1346 aa14.22□□□□□ -0.13
SPTLC1-201ENST00000262554 ZSWIM4Q9H7M6 989 aa14.22□□□□□ -0.13
SPTLC1-201ENST00000262554 NLRC4Q9NPP4 1024 aa14.22□□□□□ -0.13
SPTLC1-201ENST00000262554 MYO6Q9UM54 1294 aa14.22□□□□□ -0.13
SPTLC1-201ENST00000262554 PCDHA13Q9Y5I0 950 aa14.22□□□□□ -0.13
SPTLC1-201ENST00000262554 PHIPQ8WWQ0 1821 aa14.21□□□□□ -0.13
SPTLC1-201ENST00000262554 RCCD1A6NED2 376 aa14.21□□□□□ -0.13
SPTLC1-201ENST00000262554 DHX15O43143 795 aaKnown RBP14.21□□□□□ -0.13
SPTLC1-201ENST00000262554 PTPRAP18433 802 aa14.21□□□□□ -0.13
SPTLC1-201ENST00000262554 EIF2AK2P19525 551 aaKnown RBP14.21□□□□□ -0.13
SPTLC1-201ENST00000262554 GUCY2CP25092 1073 aa14.21□□□□□ -0.13
SPTLC1-201ENST00000262554 NMT1P30419 496 aaKnown RBP14.21□□□□□ -0.13
SPTLC1-201ENST00000262554 MNX1P50219 401 aaPredicted RBP14.21□□□□□ -0.13
SPTLC1-201ENST00000262554 POLR2FP61218 127 aaKnown RBP14.21□□□□□ -0.13
SPTLC1-201ENST00000262554 MRPS9P82933 396 aaKnown RBP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms