RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 ITGA4P13612 1032 aa23.36■■□□□ 1.33
TRIM28-201ENST00000253024 RRP1BQ14684 758 aaKnown RBP23.36■■□□□ 1.33
TRIM28-201ENST00000253024 MYCT1Q8N699 235 aa23.36■■□□□ 1.33
TRIM28-201ENST00000253024 MAST2Q6P0Q8 1798 aa23.35■■□□□ 1.33
TRIM28-201ENST00000253024 MSH4O15457 936 aa23.35■■□□□ 1.33
TRIM28-201ENST00000253024 SMARCA1P28370 1054 aa23.35■■□□□ 1.33
TRIM28-201ENST00000253024 GUCY1A3Q02108 690 aa23.35■■□□□ 1.33
TRIM28-201ENST00000253024 C15orf52Q6ZUT6 534 aaKnown RBP23.35■■□□□ 1.33
TRIM28-201ENST00000253024 TAF4BQ92750 862 aa23.35■■□□□ 1.33
TRIM28-201ENST00000253024 FAM198AQ9UFP1 575 aa23.35■■□□□ 1.33
TRIM28-201ENST00000253024 CDK5RAP2Q96SN8 1893 aa23.35■■□□□ 1.33
TRIM28-201ENST00000253024 TCP10L2B9ZVM9 353 aa23.35■■□□□ 1.33
TRIM28-201ENST00000253024 IRAK1P51617 712 aa23.35■■□□□ 1.33
TRIM28-201ENST00000253024 ZNF662Q6ZS27 426 aa23.35■■□□□ 1.33
TRIM28-201ENST00000253024 FBXO11Q86XK2 927 aa23.35■■□□□ 1.33
TRIM28-201ENST00000253024 LRRC27Q9C0I9 530 aa23.35■■□□□ 1.33
TRIM28-201ENST00000253024 OSGEPQ9NPF4 335 aa23.35■■□□□ 1.33
TRIM28-201ENST00000253024 TISP43B9A030 160 aa23.34■■□□□ 1.33
TRIM28-201ENST00000253024 TBCAO75347 108 aaKnown RBP23.34■■□□□ 1.33
TRIM28-201ENST00000253024 NAB2Q15742 525 aa23.34■■□□□ 1.33
TRIM28-201ENST00000253024 ALKBH5Q6P6C2 394 aaKnown RBP23.34■■□□□ 1.33
TRIM28-201ENST00000253024 CAPS2Q9BXY5 557 aa23.34■■□□□ 1.33
TRIM28-201ENST00000253024 CELF4Q9BZC1 486 aaKnown RBP23.34■■□□□ 1.33
TRIM28-201ENST00000253024 GANQ9H2C0 597 aa23.34■■□□□ 1.33
TRIM28-201ENST00000253024 VIPAS39Q9H9C1 493 aa23.34■■□□□ 1.33
TRIM28-201ENST00000253024 KCNMB3Q9NPA1 279 aa23.34■■□□□ 1.33
TRIM28-201ENST00000253024 A0A1W2PRG0 241 aa23.34■■□□□ 1.33
TRIM28-201ENST00000253024 PON1P27169 355 aa23.34■■□□□ 1.33
TRIM28-201ENST00000253024 DPH5Q9H2P9 285 aa23.34■■□□□ 1.33
TRIM28-201ENST00000253024 KDM3AQ9Y4C1 1321 aa23.34■■□□□ 1.33
TRIM28-201ENST00000253024 KNOP1Q1ED39 458 aaKnown RBP23.34■■□□□ 1.33
TRIM28-201ENST00000253024 CFAP58Q5T655 872 aa23.34■■□□□ 1.33
TRIM28-201ENST00000253024 PROM2Q8N271 834 aa23.34■■□□□ 1.33
TRIM28-201ENST00000253024 SSU72P8A0A1W2PR75 194 aa23.33■■□□□ 1.33
TRIM28-201ENST00000253024 LCA5LO95447 670 aa23.33■■□□□ 1.33
TRIM28-201ENST00000253024 NR3C1P04150 777 aa23.33■■□□□ 1.33
TRIM28-201ENST00000253024 IVLP07476 585 aa23.33■■□□□ 1.33
TRIM28-201ENST00000253024 NOVP48745 357 aa23.33■■□□□ 1.33
TRIM28-201ENST00000253024 LIG3P49916 1009 aa23.33■■□□□ 1.33
TRIM28-201ENST00000253024 EPHB4P54760 987 aa23.33■■□□□ 1.33
TRIM28-201ENST00000253024 NNTQ13423 1086 aa23.33■■□□□ 1.33
TRIM28-201ENST00000253024 RPS6KA1Q15418 735 aa23.33■■□□□ 1.33
TRIM28-201ENST00000253024 CDAN1Q8IWY9 1227 aa23.33■■□□□ 1.33
TRIM28-201ENST00000253024 SP8Q8IXZ3 490 aa23.33■■□□□ 1.33
TRIM28-201ENST00000253024 MMP10P09238 476 aa23.33■■□□□ 1.32
TRIM28-201ENST00000253024 ABCB5Q2M3G0 1257 aa23.33■■□□□ 1.32
TRIM28-201ENST00000253024 GLYCTKQ8IVS8 523 aa23.33■■□□□ 1.32
TRIM28-201ENST00000253024 ACER1Q8TDN7 264 aa23.33■■□□□ 1.32
TRIM28-201ENST00000253024 AMNQ9BXJ7 453 aa23.33■■□□□ 1.32
TRIM28-201ENST00000253024 TMX4Q9H1E5 349 aaPredicted RBP23.33■■□□□ 1.32
TRIM28-201ENST00000253024 PCIF1Q9H4Z3 704 aa23.33■■□□□ 1.32
TRIM28-201ENST00000253024 SWAP70Q9UH65 585 aa23.33■■□□□ 1.32
TRIM28-201ENST00000253024 hCG_1984214I3L0E3 225 aa23.32■■□□□ 1.32
TRIM28-201ENST00000253024 AFPP02771 609 aaKnown RBP23.32■■□□□ 1.32
TRIM28-201ENST00000253024 CHRNA5P30532 468 aa23.32■■□□□ 1.32
TRIM28-201ENST00000253024 ZNF713Q8N859 430 aaPredicted RBP23.32■■□□□ 1.32
TRIM28-201ENST00000253024 DYDC2Q96IM9 177 aa23.32■■□□□ 1.32
TRIM28-201ENST00000253024 EIF2AK1Q9BQI3 630 aaKnown RBP23.32■■□□□ 1.32
TRIM28-201ENST00000253024 SPIRE1Q08AE8 756 aa23.32■■□□□ 1.32
TRIM28-201ENST00000253024 ZNF211Q13398 564 aaPredicted RBP23.32■■□□□ 1.32
TRIM28-201ENST00000253024 MIGA2Q7L4E1 593 aa23.32■■□□□ 1.32
TRIM28-201ENST00000253024 DAAM2Q86T65 1068 aa23.32■■□□□ 1.32
TRIM28-201ENST00000253024 CERS3Q8IU89 383 aa23.32■■□□□ 1.32
TRIM28-201ENST00000253024 BANK1Q8NDB2 785 aa23.32■■□□□ 1.32
TRIM28-201ENST00000253024 ETNPPLQ8TBG4 499 aa23.32■■□□□ 1.32
TRIM28-201ENST00000253024 AMACRQ9UHK6 382 aa23.32■■□□□ 1.32
TRIM28-201ENST00000253024 AFF2P51816 1311 aa23.32■■□□□ 1.32
TRIM28-201ENST00000253024 TMEM110-MUSTN1A8MSY1 372 aa23.31■■□□□ 1.32
TRIM28-201ENST00000253024 PJA2O43164 708 aa23.31■■□□□ 1.32
TRIM28-201ENST00000253024 COBLL1Q53SF7 1204 aa23.31■■□□□ 1.32
TRIM28-201ENST00000253024 IRF2BP2Q7Z5L9 587 aa23.31■■□□□ 1.32
TRIM28-201ENST00000253024 LENG9Q96B70 501 aa23.31■■□□□ 1.32
TRIM28-201ENST00000253024 RABGAP1Q9Y3P9 1069 aa23.31■■□□□ 1.32
TRIM28-201ENST00000253024 USP8P40818 1118 aa23.31■■□□□ 1.32
TRIM28-201ENST00000253024 SEC24CP53992 1094 aa23.31■■□□□ 1.32
TRIM28-201ENST00000253024 AOC3Q16853 763 aa23.31■■□□□ 1.32
TRIM28-201ENST00000253024 KIAA1755Q5JYT7 1200 aa23.31■■□□□ 1.32
TRIM28-201ENST00000253024 CEP85LQ5SZL2 805 aa23.31■■□□□ 1.32
TRIM28-201ENST00000253024 ZNF233A6NK53 670 aa23.31■■□□□ 1.32
TRIM28-201ENST00000253024 GCFC2P16383 781 aaKnown RBP23.31■■□□□ 1.32
TRIM28-201ENST00000253024 FLT3P36888 993 aa23.31■■□□□ 1.32
TRIM28-201ENST00000253024 IFT20Q8IY31 132 aa23.31■■□□□ 1.32
TRIM28-201ENST00000253024 MEI1Q5TIA1 1274 aa23.3■■□□□ 1.32
TRIM28-201ENST00000253024 AADACL2Q6P093 401 aa23.3■■□□□ 1.32
TRIM28-201ENST00000253024 CEP63Q96MT8 703 aa23.3■■□□□ 1.32
TRIM28-201ENST00000253024 CRAMP1Q96RY5 1269 aa23.3■■□□□ 1.32
TRIM28-201ENST00000253024 NAGPAQ9UK23 515 aa23.3■■□□□ 1.32
TRIM28-201ENST00000253024 TMEM150BA6NC51 233 aa23.3■■□□□ 1.32
TRIM28-201ENST00000253024 FAM13AO94988 1023 aa23.3■■□□□ 1.32
TRIM28-201ENST00000253024 MICALL1Q8N3F8 863 aa23.3■■□□□ 1.32
TRIM28-201ENST00000253024 CSRNP1Q96S65 589 aa23.3■■□□□ 1.32
TRIM28-201ENST00000253024 FBXO28Q9NVF7 368 aa23.3■■□□□ 1.32
TRIM28-201ENST00000253024 NR2E1Q9Y466 385 aa23.3■■□□□ 1.32
TRIM28-201ENST00000253024 PALB2Q86YC2 1186 aa23.29■■□□□ 1.32
TRIM28-201ENST00000253024 FAM84AQ96KN4 292 aa23.29■■□□□ 1.32
TRIM28-201ENST00000253024 NEUROG2Q9H2A3 272 aa23.29■■□□□ 1.32
TRIM28-201ENST00000253024 ACP6Q9NPH0 428 aa23.29■■□□□ 1.32
TRIM28-201ENST00000253024 ASTN1O14525 1302 aa23.29■■□□□ 1.32
TRIM28-201ENST00000253024 OPLAHO14841 1288 aa23.29■■□□□ 1.32
TRIM28-201ENST00000253024 HOXA10P31260 410 aaPredicted RBP23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms