RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 NEK8Q86SG6 692 aa25.96■■□□□ 1.75
LSM4-201ENST00000252816 PHOSPHO2Q8TCD6 241 aa25.96■■□□□ 1.75
LSM4-201ENST00000252816 TNPO1Q92973 898 aaKnown RBP25.96■■□□□ 1.75
LSM4-201ENST00000252816 TNFRSF25Q93038 417 aa25.96■■□□□ 1.75
LSM4-201ENST00000252816 NKX2-4Q9H2Z4 354 aa25.96■■□□□ 1.75
LSM4-201ENST00000252816 UNC45AQ9H3U1 944 aa25.96■■□□□ 1.75
LSM4-201ENST00000252816 DDX25Q9UHL0 483 aaKnown RBP25.96■■□□□ 1.75
LSM4-201ENST00000252816 GBF1Q92538 1859 aa25.96■■□□□ 1.75
LSM4-201ENST00000252816 ABHD14A-ACY1A0A1B0GW23 586 aa25.95■■□□□ 1.74
LSM4-201ENST00000252816 WDR64B1ANS9 1081 aa25.95■■□□□ 1.74
LSM4-201ENST00000252816 CHMP2AO43633 222 aa25.95■■□□□ 1.74
LSM4-201ENST00000252816 HBP1O60381 514 aa25.95■■□□□ 1.74
LSM4-201ENST00000252816 DEFB103AP81534 67 aa25.95■■□□□ 1.74
LSM4-201ENST00000252816 MGAT3Q09327 533 aa25.95■■□□□ 1.74
LSM4-201ENST00000252816 GRIN2CQ14957 1233 aa25.95■■□□□ 1.74
LSM4-201ENST00000252816 TEKT3Q9BXF9 490 aa25.95■■□□□ 1.74
LSM4-201ENST00000252816 DISC1Q9NRI5 854 aa25.95■■□□□ 1.74
LSM4-201ENST00000252816 GABBR1Q9UBS5 961 aa25.95■■□□□ 1.74
LSM4-201ENST00000252816 SAMM50Q9Y512 469 aa25.95■■□□□ 1.74
LSM4-201ENST00000252816 PCDHA2Q9Y5H9 948 aa25.95■■□□□ 1.74
LSM4-201ENST00000252816 PCDHA11Q9Y5I1 949 aa25.95■■□□□ 1.74
LSM4-201ENST00000252816 CHD7Q9P2D1 2997 aa25.95■■□□□ 1.74
LSM4-201ENST00000252816 ZBTB42B2RXF5 422 aa25.94■■□□□ 1.74
LSM4-201ENST00000252816 MMP1P03956 469 aa25.94■■□□□ 1.74
LSM4-201ENST00000252816 KCNJ6P48051 423 aa25.94■■□□□ 1.74
LSM4-201ENST00000252816 MKRN4PQ13434 485 aaPredicted RBP25.94■■□□□ 1.74
LSM4-201ENST00000252816 IKBKEQ14164 716 aa25.94■■□□□ 1.74
LSM4-201ENST00000252816 RABEP1Q15276 862 aa25.94■■□□□ 1.74
LSM4-201ENST00000252816 KRT40Q6A162 431 aa25.94■■□□□ 1.74
LSM4-201ENST00000252816 TMCO2Q7Z6W1 182 aaPredicted RBP25.94■■□□□ 1.74
LSM4-201ENST00000252816 HERC6Q8IVU3 1022 aa25.94■■□□□ 1.74
LSM4-201ENST00000252816 ZSCAN31Q96LW9 406 aaPredicted RBP25.94■■□□□ 1.74
LSM4-201ENST00000252816 FAM49AQ9H0Q0 323 aaPredicted RBP25.94■■□□□ 1.74
LSM4-201ENST00000252816 IGSF9BQ9UPX0 1349 aa25.93■■□□□ 1.74
LSM4-201ENST00000252816 PPP4R3AQ6IN85 833 aa25.93■■□□□ 1.74
LSM4-201ENST00000252816 MTHFD1LQ6UB35 978 aa25.93■■□□□ 1.74
LSM4-201ENST00000252816 B3GNT9Q6UX72 402 aa25.93■■□□□ 1.74
LSM4-201ENST00000252816 RSPH3Q86UC2 560 aa25.93■■□□□ 1.74
LSM4-201ENST00000252816 MYLIPQ8WY64 445 aa25.93■■□□□ 1.74
LSM4-201ENST00000252816 LLPHQ9BRT6 129 aaKnown RBP25.93■■□□□ 1.74
LSM4-201ENST00000252816 SH2B1Q9NRF2 756 aaPredicted RBP25.93■■□□□ 1.74
LSM4-201ENST00000252816 PTPRSQ13332 1948 aa25.92■■□□□ 1.74
LSM4-201ENST00000252816 BTBD18B2RXH4 712 aa25.92■■□□□ 1.74
LSM4-201ENST00000252816 ZNF862O60290 1169 aa25.92■■□□□ 1.74
LSM4-201ENST00000252816 TRMT1LQ7Z2T5 733 aaKnown RBP25.92■■□□□ 1.74
LSM4-201ENST00000252816 CKAP2LQ8IYA6 745 aa25.92■■□□□ 1.74
LSM4-201ENST00000252816 BRMS1Q9HCU9 246 aa25.92■■□□□ 1.74
LSM4-201ENST00000252816 CDY2AQ9Y6F7 541 aa25.92■■□□□ 1.74
LSM4-201ENST00000252816 CCNT1O60563 726 aaKnown RBP25.91■■□□□ 1.74
LSM4-201ENST00000252816 EFCAB14O75071 495 aa25.91■■□□□ 1.74
LSM4-201ENST00000252816 GCFC2P16383 781 aaKnown RBP25.91■■□□□ 1.74
LSM4-201ENST00000252816 KLRC1P26715 233 aa25.91■■□□□ 1.74
LSM4-201ENST00000252816 SFNP31947 248 aa25.91■■□□□ 1.74
LSM4-201ENST00000252816 JAK3P52333 1124 aa25.91■■□□□ 1.74
LSM4-201ENST00000252816 MRPS6P82932 125 aaKnown RBP25.91■■□□□ 1.74
LSM4-201ENST00000252816 TRIM29Q14134 588 aa25.91■■□□□ 1.74
LSM4-201ENST00000252816 UGCGQ16739 394 aa25.91■■□□□ 1.74
LSM4-201ENST00000252816 ZNF484Q5JVG2 852 aa25.91■■□□□ 1.74
LSM4-201ENST00000252816 LIN28BQ6ZN17 250 aaKnown RBP eCLIP25.91■■□□□ 1.746e-40■■■■■ 76.3
LSM4-201ENST00000252816 DIS3L2Q8IYB7 885 aaKnown RBP25.91■■□□□ 1.74
LSM4-201ENST00000252816 BBXQ8WY36 941 aaPredicted RBP25.91■■□□□ 1.74
LSM4-201ENST00000252816 SEPT8Q92599 483 aa25.91■■□□□ 1.74
LSM4-201ENST00000252816 SLC28A3Q9HAS3 691 aa25.91■■□□□ 1.74
LSM4-201ENST00000252816 UPF2Q9HAU5 1272 aaKnown RBP25.91■■□□□ 1.74
LSM4-201ENST00000252816 KCNMB3Q9NPA1 279 aa25.91■■□□□ 1.74
LSM4-201ENST00000252816 COL1A2P08123 1366 aa25.91■■□□□ 1.74
LSM4-201ENST00000252816 GHRP10912 638 aa25.9■■□□□ 1.74
LSM4-201ENST00000252816 GUCY1B3Q02153 619 aa25.9■■□□□ 1.74
LSM4-201ENST00000252816 TMEM62Q0P6H9 643 aa25.9■■□□□ 1.74
LSM4-201ENST00000252816 LPIN1Q14693 890 aa25.9■■□□□ 1.74
LSM4-201ENST00000252816 SIP14410 1827 aa25.9■■□□□ 1.74
LSM4-201ENST00000252816 MYH9P35579 1960 aaKnown RBP25.89■■□□□ 1.74
LSM4-201ENST00000252816 SMIM35A0A1B0GVV1 85 aa25.89■■□□□ 1.74
LSM4-201ENST00000252816 CA3P07451 260 aa25.89■■□□□ 1.74
LSM4-201ENST00000252816 MIER3Q7Z3K6 550 aa25.89■■□□□ 1.74
LSM4-201ENST00000252816 RDM1Q8NG50 284 aa25.89■■□□□ 1.74
LSM4-201ENST00000252816 HAS1Q92839 578 aa25.89■■□□□ 1.74
LSM4-201ENST00000252816 FAM20AQ96MK3 541 aa25.89■■□□□ 1.74
LSM4-201ENST00000252816 IFIH1Q9BYX4 1025 aaKnown RBP25.89■■□□□ 1.74
LSM4-201ENST00000252816 VAV3Q9UKW4 847 aa25.89■■□□□ 1.74
LSM4-201ENST00000252816 EYSQ5T1H1 3165 aa25.89■■□□□ 1.74
LSM4-201ENST00000252816 ARHGEF15O94989 841 aa25.88■■□□□ 1.73
LSM4-201ENST00000252816 C22orf31O95567 290 aa25.88■■□□□ 1.73
LSM4-201ENST00000252816 RPLP2P05387 115 aaKnown RBP25.88■■□□□ 1.73
LSM4-201ENST00000252816 PRKCEQ02156 737 aa25.88■■□□□ 1.73
LSM4-201ENST00000252816 FBXO47Q5MNV8 452 aa25.88■■□□□ 1.73
LSM4-201ENST00000252816 IER5Q5VY09 327 aa25.88■■□□□ 1.73
LSM4-201ENST00000252816 PPP2R2DQ66LE6 453 aa25.88■■□□□ 1.73
LSM4-201ENST00000252816 POTEDQ86YR6 584 aa25.88■■□□□ 1.73
LSM4-201ENST00000252816 KIAA0319LQ8IZA0 1049 aa25.88■■□□□ 1.73
LSM4-201ENST00000252816 TBC1D32Q96NH3 1257 aa25.88■■□□□ 1.73
LSM4-201ENST00000252816 WDR81Q562E7 1941 aa25.88■■□□□ 1.73
LSM4-201ENST00000252816 MICAL3Q7RTP6 2002 aa25.87■■□□□ 1.73
LSM4-201ENST00000252816 EML1O00423 815 aa25.87■■□□□ 1.73
LSM4-201ENST00000252816 WNT7AO00755 349 aa25.87■■□□□ 1.73
LSM4-201ENST00000252816 CD2BP2O95400 341 aaKnown RBP25.87■■□□□ 1.73
LSM4-201ENST00000252816 OATP04181 439 aa25.87■■□□□ 1.73
LSM4-201ENST00000252816 C8orf76Q96K31 380 aa25.87■■□□□ 1.73
LSM4-201ENST00000252816 FAM167AQ96KS9 214 aa25.87■■□□□ 1.73
LSM4-201ENST00000252816 NAP1L4Q99733 375 aaKnown RBP25.87■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms