RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 N4BP2L2Q92802 583 aaPredicted RBP13.06□□□□□ -0.32
USHBP1-201ENST00000252597 RPGRQ92834 1020 aaKnown RBP13.06□□□□□ -0.32
USHBP1-201ENST00000252597 LRRC45Q96CN5 670 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 SH3GL2Q99962 352 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 NCAPGQ9BPX3 1015 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 PLCD4Q9BRC7 762 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 ADAM33Q9BZ11 813 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 ANKRD2Q9GZV1 360 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 KCNK9Q9NPC2 374 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 KLC4Q9NSK0 619 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 GCNT4Q9P109 453 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 STK38LQ9Y2H1 464 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 GMNCA6NCL1 334 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 DDX39AO00148 427 aaKnown RBP13.06□□□□□ -0.32
USHBP1-201ENST00000252597 PGRMC1O00264 195 aaKnown RBP13.06□□□□□ -0.32
USHBP1-201ENST00000252597 KIF4AO95239 1232 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 CDC25CP30307 473 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 GJC1P36383 396 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 NAB2Q15742 525 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 TBC1D1Q86TI0 1168 aaPredicted RBP13.06□□□□□ -0.32
USHBP1-201ENST00000252597 SPICE1Q8N0Z3 855 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 WDR66Q8TBY9 1149 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 GJD4Q96KN9 370 aaPredicted RBP13.06□□□□□ -0.32
USHBP1-201ENST00000252597 LRRC4CQ9HCJ2 640 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 BCL9LQ86UU0 1499 aa13.05□□□□□ -0.32
USHBP1-201ENST00000252597 A0A1W2PQJ5 194 aa13.05□□□□□ -0.32
USHBP1-201ENST00000252597 TRIM49P0CI25 452 aa13.05□□□□□ -0.32
USHBP1-201ENST00000252597 TRIM49CP0CI26 452 aa13.05□□□□□ -0.32
USHBP1-201ENST00000252597 MYBP10242 640 aa13.05□□□□□ -0.32
USHBP1-201ENST00000252597 IQCKQ8N0W5 287 aa13.05□□□□□ -0.32
USHBP1-201ENST00000252597 PURBQ96QR8 312 aaKnown RBP13.05□□□□□ -0.32
USHBP1-201ENST00000252597 ELAC2Q9BQ52 826 aaKnown RBP13.05□□□□□ -0.32
USHBP1-201ENST00000252597 LBHD1Q9BQE6 289 aaPredicted RBP13.05□□□□□ -0.32
USHBP1-201ENST00000252597 BHMT2Q9H2M3 363 aa13.05□□□□□ -0.32
USHBP1-201ENST00000252597 TSKSQ9UJT2 592 aa13.05□□□□□ -0.32
USHBP1-201ENST00000252597 SHOX2O60902 331 aaPredicted RBP13.05□□□□□ -0.32
USHBP1-201ENST00000252597 SSR1P43307 286 aaKnown RBP13.05□□□□□ -0.32
USHBP1-201ENST00000252597 TPH2Q8IWU9 490 aa13.05□□□□□ -0.32
USHBP1-201ENST00000252597 SEPT12Q8IYM1 358 aa13.05□□□□□ -0.32
USHBP1-201ENST00000252597 CXorf56Q9H5V9 222 aa13.05□□□□□ -0.32
USHBP1-201ENST00000252597 NR2E1Q9Y466 385 aa13.05□□□□□ -0.32
USHBP1-201ENST00000252597 NUP98P52948 1817 aa13.05□□□□□ -0.32
USHBP1-201ENST00000252597 FLOT1O75955 427 aa13.05□□□□□ -0.32
USHBP1-201ENST00000252597 NOL4O94818 638 aa13.05□□□□□ -0.32
USHBP1-201ENST00000252597 RFC4P35249 363 aa13.05□□□□□ -0.32
USHBP1-201ENST00000252597 PRPHP41219 470 aa13.05□□□□□ -0.32
USHBP1-201ENST00000252597 MRPL12P52815 198 aaKnown RBP13.05□□□□□ -0.32
USHBP1-201ENST00000252597 TRIP13Q15645 432 aaPredicted RBP13.05□□□□□ -0.32
USHBP1-201ENST00000252597 SHROOM1Q2M3G4 852 aaPredicted RBP13.05□□□□□ -0.32
USHBP1-201ENST00000252597 SPRED3Q2MJR0 410 aa13.05□□□□□ -0.32
USHBP1-201ENST00000252597 SYCP3Q8IZU3 236 aa13.05□□□□□ -0.32
USHBP1-201ENST00000252597 CEP89Q96ST8 783 aa13.05□□□□□ -0.32
USHBP1-201ENST00000252597 SLC40A1Q9NP59 571 aa13.05□□□□□ -0.32
USHBP1-201ENST00000252597 RGL1Q9NZL6 768 aa13.05□□□□□ -0.32
USHBP1-201ENST00000252597 STK17AQ9UEE5 414 aa13.05□□□□□ -0.32
USHBP1-201ENST00000252597 TRPC5Q9UL62 973 aaPredicted RBP13.05□□□□□ -0.32
USHBP1-201ENST00000252597 PCDHA1Q9Y5I3 950 aa13.05□□□□□ -0.32
USHBP1-201ENST00000252597 UCHL3P15374 230 aa13.04□□□□□ -0.32
USHBP1-201ENST00000252597 PPP1R2P41236 205 aa13.04□□□□□ -0.32
USHBP1-201ENST00000252597 DOK7Q18PE1 504 aa13.04□□□□□ -0.32
USHBP1-201ENST00000252597 GKAP1Q5VSY0 366 aaPredicted RBP13.04□□□□□ -0.32
USHBP1-201ENST00000252597 GALNT17Q6IS24 598 aa13.04□□□□□ -0.32
USHBP1-201ENST00000252597 ZNF804AQ7Z570 1209 aa13.04□□□□□ -0.32
USHBP1-201ENST00000252597 ADGRF4Q8IZF3 695 aa13.04□□□□□ -0.32
USHBP1-201ENST00000252597 MYCT1Q8N699 235 aa13.04□□□□□ -0.32
USHBP1-201ENST00000252597 WNK3Q9BYP7 1800 aa13.04□□□□□ -0.32
USHBP1-201ENST00000252597 FOXO6A8MYZ6 492 aa13.04□□□□□ -0.32
USHBP1-201ENST00000252597 GSTO1P78417 241 aa13.04□□□□□ -0.32
USHBP1-201ENST00000252597 MAP2K1Q02750 393 aaPredicted RBP13.04□□□□□ -0.32
USHBP1-201ENST00000252597 SNX1Q13596 522 aa13.04□□□□□ -0.32
USHBP1-201ENST00000252597 RUFY4Q6ZNE9 571 aa13.04□□□□□ -0.32
USHBP1-201ENST00000252597 CCDC26Q8TAB7 109 aa13.04□□□□□ -0.32
USHBP1-201ENST00000252597 WHAMMQ8TF30 809 aa13.04□□□□□ -0.32
USHBP1-201ENST00000252597 SCFD1Q8WVM8 642 aa13.04□□□□□ -0.32
USHBP1-201ENST00000252597 CUL5Q93034 780 aa13.04□□□□□ -0.32
USHBP1-201ENST00000252597 RIC8AQ9NPQ8 531 aa13.04□□□□□ -0.32
USHBP1-201ENST00000252597 CTTNBP2NLQ9P2B4 639 aa13.04□□□□□ -0.32
USHBP1-201ENST00000252597 CNOT8Q9UFF9 292 aaKnown RBP13.04□□□□□ -0.32
USHBP1-201ENST00000252597 ODF2LQ9ULJ1 636 aa13.04□□□□□ -0.32
USHBP1-201ENST00000252597 MYH14Q7Z406 1995 aaKnown RBP13.04□□□□□ -0.32
USHBP1-201ENST00000252597 PVALEFA0A1B0GWK0 134 aa13.03□□□□□ -0.32
USHBP1-201ENST00000252597 HMGB1P1B2RPK0 211 aaPredicted RBP13.03□□□□□ -0.32
USHBP1-201ENST00000252597 SKAP2O75563 359 aaPredicted RBP13.03□□□□□ -0.32
USHBP1-201ENST00000252597 FGFR4P22455 802 aa13.03□□□□□ -0.32
USHBP1-201ENST00000252597 CTTNQ14247 550 aaKnown RBP13.03□□□□□ -0.32
USHBP1-201ENST00000252597 ZC2HC1CQ53FD0 456 aaPredicted RBP13.03□□□□□ -0.32
USHBP1-201ENST00000252597 CAPN12Q6ZSI9 719 aa13.03□□□□□ -0.32
USHBP1-201ENST00000252597 RNF10Q8N5U6 811 aaKnown RBP13.03□□□□□ -0.32
USHBP1-201ENST00000252597 MSL3Q8N5Y2 521 aaKnown RBP13.03□□□□□ -0.32
USHBP1-201ENST00000252597 RAPGEF5Q92565 580 aa13.03□□□□□ -0.32
USHBP1-201ENST00000252597 PCIF1Q9H4Z3 704 aa13.03□□□□□ -0.32
USHBP1-201ENST00000252597 TBK1Q9UHD2 729 aa13.03□□□□□ -0.32
USHBP1-201ENST00000252597 DDX20Q9UHI6 824 aaKnown RBP13.03□□□□□ -0.32
USHBP1-201ENST00000252597 AMFRQ9UKV5 643 aa13.03□□□□□ -0.32
USHBP1-201ENST00000252597 NID2Q14112 1375 aa13.03□□□□□ -0.32
USHBP1-201ENST00000252597 CCDC172P0C7W6 258 aa13.03□□□□□ -0.32
USHBP1-201ENST00000252597 CLNS1AP54105 237 aaKnown RBP13.03□□□□□ -0.32
USHBP1-201ENST00000252597 ZNF844Q08AG5 666 aa13.03□□□□□ -0.32
USHBP1-201ENST00000252597 MESDQ14696 234 aa13.03□□□□□ -0.32
USHBP1-201ENST00000252597 ZYXQ15942 572 aaKnown RBP13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms