RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 ARID5AQ03989 594 aa14.88□□□□□ -0.03
LDLR-201ENST00000252444 TROAPQ12815 778 aa14.88□□□□□ -0.03
LDLR-201ENST00000252444 CUL4BQ13620 913 aa14.88□□□□□ -0.03
LDLR-201ENST00000252444 SEC23AQ15436 765 aa14.88□□□□□ -0.03
LDLR-201ENST00000252444 CFAP221Q4G0U5 840 aa14.88□□□□□ -0.03
LDLR-201ENST00000252444 RRAGAQ7L523 313 aa14.88□□□□□ -0.03
LDLR-201ENST00000252444 MAEAQ7L5Y9 396 aa14.88□□□□□ -0.03
LDLR-201ENST00000252444 INO80B-WBP1J3KQ70 363 aa14.87□□□□□ -0.03
LDLR-201ENST00000252444 MYL3P08590 195 aa14.87□□□□□ -0.03
LDLR-201ENST00000252444 CD19P15391 556 aa14.87□□□□□ -0.03
LDLR-201ENST00000252444 TCP1P17987 556 aaKnown RBP14.87□□□□□ -0.03
LDLR-201ENST00000252444 CA8P35219 290 aa14.87□□□□□ -0.03
LDLR-201ENST00000252444 TAOK1Q7L7X3 1001 aa14.87□□□□□ -0.03
LDLR-201ENST00000252444 FMR1NBQ8N0W7 255 aaPredicted RBP14.87□□□□□ -0.03
LDLR-201ENST00000252444 SNX25Q9H3E2 840 aa14.87□□□□□ -0.03
LDLR-201ENST00000252444 MORC2Q9Y6X9 1032 aaPredicted RBP14.87□□□□□ -0.03
LDLR-201ENST00000252444 PDXKO00764 312 aa14.87□□□□□ -0.03
LDLR-201ENST00000252444 H2AFZP0C0S5 128 aa14.87□□□□□ -0.03
LDLR-201ENST00000252444 H2AFVQ71UI9 128 aa14.87□□□□□ -0.03
LDLR-201ENST00000252444 C7orf31Q8N865 590 aa14.87□□□□□ -0.03
LDLR-201ENST00000252444 SOCS4Q8WXH5 440 aa14.87□□□□□ -0.03
LDLR-201ENST00000252444 TMEM51Q9NW97 253 aa14.87□□□□□ -0.03
LDLR-201ENST00000252444 LTBP4Q8N2S1 1624 aa14.87□□□□□ -0.03
LDLR-201ENST00000252444 GFPT2O94808 682 aa14.87□□□□□ -0.03
LDLR-201ENST00000252444 MTMR3Q13615 1198 aa14.87□□□□□ -0.03
LDLR-201ENST00000252444 RPS6KA1Q15418 735 aa14.87□□□□□ -0.03
LDLR-201ENST00000252444 XXYLT1Q8NBI6 393 aa14.87□□□□□ -0.03
LDLR-201ENST00000252444 EIF2AK1Q9BQI3 630 aaKnown RBP14.87□□□□□ -0.03
LDLR-201ENST00000252444 MXI1P50539 228 aa14.87□□□□□ -0.03
LDLR-201ENST00000252444 LACTBP83111 547 aaPredicted RBP14.87□□□□□ -0.03
LDLR-201ENST00000252444 FRMD5Q7Z6J6 570 aa14.87□□□□□ -0.03
LDLR-201ENST00000252444 MAP7D3Q8IWC1 876 aa14.87□□□□□ -0.03
LDLR-201ENST00000252444 NSRP1Q9H0G5 558 aaKnown RBP14.87□□□□□ -0.03
LDLR-201ENST00000252444 ARFGAP3Q9NP61 516 aa14.87□□□□□ -0.03
LDLR-201ENST00000252444 NMT2O60551 498 aa14.86□□□□□ -0.03
LDLR-201ENST00000252444 TRIM72Q6ZMU5 477 aa14.86□□□□□ -0.03
LDLR-201ENST00000252444 BEST2Q8NFU1 509 aa14.86□□□□□ -0.03
LDLR-201ENST00000252444 WDR18Q9BV38 432 aa14.86□□□□□ -0.03
LDLR-201ENST00000252444 RAB17Q9H0T7 212 aa14.86□□□□□ -0.03
LDLR-201ENST00000252444 CRYBG1Q9Y4K1 1723 aa14.86□□□□□ -0.03
LDLR-201ENST00000252444 CD2BP2O95400 341 aaKnown RBP14.86□□□□□ -0.03
LDLR-201ENST00000252444 STILQ15468 1287 aa14.86□□□□□ -0.03
LDLR-201ENST00000252444 SPATA33Q96N06 139 aa14.86□□□□□ -0.03
LDLR-201ENST00000252444 HOMER3Q9NSC5 361 aa14.86□□□□□ -0.03
LDLR-201ENST00000252444 NSFP46459 744 aaKnown RBP14.86□□□□□ -0.03
LDLR-201ENST00000252444 MSTO1Q9BUK6 570 aa14.86□□□□□ -0.03
LDLR-201ENST00000252444 FBXO2Q9UK22 296 aaPredicted RBP14.86□□□□□ -0.03
LDLR-201ENST00000252444 P4HA2O15460 535 aa14.86□□□□□ -0.03
LDLR-201ENST00000252444 SPOUT1Q5T280 376 aaKnown RBP14.86□□□□□ -0.03
LDLR-201ENST00000252444 MORC4Q8TE76 937 aa14.86□□□□□ -0.03
LDLR-201ENST00000252444 PRMT6Q96LA8 375 aaPredicted RBP14.86□□□□□ -0.03
LDLR-201ENST00000252444 ZNF560Q96MR9 790 aa14.86□□□□□ -0.03
LDLR-201ENST00000252444 BHMT2Q9H2M3 363 aa14.86□□□□□ -0.03
LDLR-201ENST00000252444 LRRC4BQ9NT99 713 aa14.86□□□□□ -0.03
LDLR-201ENST00000252444 SCINQ9Y6U3 715 aa14.86□□□□□ -0.03
LDLR-201ENST00000252444 HBP1O60381 514 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 SERPING1P05155 500 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 TGFB3P10600 412 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 SREBF1P36956 1147 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 PGBD4Q96DM1 585 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 HYOU1Q9Y4L1 999 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 NR3C2P08235 984 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 SARNPP82979 210 aaKnown RBP14.85□□□□□ -0.03
LDLR-201ENST00000252444 ZNF484Q5JVG2 852 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 IFT20Q8IY31 132 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 KIF2CQ99661 725 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 MKNK1Q9BUB5 465 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 MOV10L1Q9BXT6 1211 aaKnown RBP14.85□□□□□ -0.03
LDLR-201ENST00000252444 RAB20Q9NX57 234 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.85□□□□□ -0.03
LDLR-201ENST00000252444 A0A1W2PQC6 194 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 CELF2O95319 508 aaKnown RBP14.85□□□□□ -0.03
LDLR-201ENST00000252444 PPP1R7Q15435 360 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 KNOP1Q1ED39 458 aaKnown RBP14.85□□□□□ -0.03
LDLR-201ENST00000252444 PCNX4Q63HM2 1172 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 OR6J1Q8NGC5 347 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 CCHCR1Q8TD31 782 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 DYDC1Q8WWB3 177 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 DYDC2Q96IM9 177 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 LXNQ9BS40 222 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 KBTBD13C9JR72 458 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 COASYQ13057 564 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 MAATS1Q7Z4T9 603 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 PLEKHH3Q7Z736 793 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 RNF34Q969K3 372 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 TMEM39BQ9GZU3 492 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 KCNQ5Q9NR82 932 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 MAPK8IP1Q9UQF2 711 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 UTP11Q9Y3A2 253 aaKnown RBP14.85□□□□□ -0.03
LDLR-201ENST00000252444 MAPTP10636 758 aaKnown RBP14.85□□□□□ -0.03
LDLR-201ENST00000252444 EDRF1Q3B7T1 1238 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 ANKRD23Q86SG2 305 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 THEM5Q8N1Q8 247 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 MED10Q9BTT4 135 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 CEP72Q9P209 647 aa14.85□□□□□ -0.03
LDLR-201ENST00000252444 DOT1LQ8TEK3 1739 aa14.84□□□□□ -0.03
LDLR-201ENST00000252444 IL18RAPO95256 599 aa14.84□□□□□ -0.03
LDLR-201ENST00000252444 DSG3P32926 999 aa14.84□□□□□ -0.03
LDLR-201ENST00000252444 HUNKP57058 714 aa14.84□□□□□ -0.03
LDLR-201ENST00000252444 PEX26Q7Z412 305 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms