RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 SPATS2Q86XZ4 545 aaKnown RBP13.55□□□□□ -0.24
NUP88-201ENST00000225696 RAPGEF5Q92565 580 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 ZKSCAN4Q969J2 545 aaPredicted RBP13.55□□□□□ -0.24
NUP88-201ENST00000225696 MAGOHBQ96A72 148 aaKnown RBP13.55□□□□□ -0.24
NUP88-201ENST00000225696 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.55□□□□□ -0.246e-6■■□□□ 11.7
NUP88-201ENST00000225696 TRIM51Q9BSJ1 452 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 SLC40A1Q9NP59 571 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 KLC4Q9NSK0 619 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 SBF2Q86WG5 1849 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 NRAPQ86VF7 1730 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 GPR75-ASB3A0A0A6YYF3 556 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 PGRMC1O00264 195 aaKnown RBP13.55□□□□□ -0.24
NUP88-201ENST00000225696 ATP2C2O75185 946 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 CLSTN1O94985 981 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 CASP4P49662 377 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 GSTO1P78417 241 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 CUL1Q13616 776 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 ODF2Q5BJF6 829 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 UBAP2Q5T6F2 1119 aaKnown RBP13.55□□□□□ -0.24
NUP88-201ENST00000225696 MICALCLQ6ZW33 695 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 TMC3Q7Z5M5 1100 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 CCDC91Q7Z6B0 441 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 ADAT2Q7Z6V5 191 aaKnown RBP13.55□□□□□ -0.24
NUP88-201ENST00000225696 ZC3H3Q8IXZ2 948 aaKnown RBP13.55□□□□□ -0.24
NUP88-201ENST00000225696 OLIG1Q8TAK6 271 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 SPAG5Q96R06 1193 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 OSGEPQ9NPF4 335 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 STXBP5LQ9Y2K9 1186 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 BTNL10A8MVZ5 291 aa13.54□□□□□ -0.24
NUP88-201ENST00000225696 USP17L10C9JJH3 530 aa13.54□□□□□ -0.24
NUP88-201ENST00000225696 DDX3XO00571 662 aaKnown RBP eCLIP13.54□□□□□ -0.24
NUP88-201ENST00000225696 AKAP3O75969 853 aa13.54□□□□□ -0.24
NUP88-201ENST00000225696 GNA14O95837 355 aa13.54□□□□□ -0.24
NUP88-201ENST00000225696 POLD1P28340 1107 aa13.54□□□□□ -0.24
NUP88-201ENST00000225696 SMTNP53814 917 aa13.54□□□□□ -0.24
NUP88-201ENST00000225696 DHX9Q08211 1270 aaKnown RBP13.54□□□□□ -0.24
NUP88-201ENST00000225696 DDR1Q08345 913 aa13.54□□□□□ -0.24
NUP88-201ENST00000225696 DCAF17Q5H9S7 520 aaPredicted RBP13.54□□□□□ -0.24
NUP88-201ENST00000225696 FAM228AQ86W67 206 aa13.54□□□□□ -0.24
NUP88-201ENST00000225696 CCDC65Q8IXS2 484 aa13.54□□□□□ -0.24
NUP88-201ENST00000225696 SEC16BQ96JE7 1060 aa13.54□□□□□ -0.24
NUP88-201ENST00000225696 PBKQ96KB5 322 aa13.54□□□□□ -0.24
NUP88-201ENST00000225696 LRRC27Q9C0I9 530 aa13.54□□□□□ -0.24
NUP88-201ENST00000225696 ZNF287Q9HBT7 754 aa13.54□□□□□ -0.24
NUP88-201ENST00000225696 SIX2Q9NPC8 291 aa13.54□□□□□ -0.24
NUP88-201ENST00000225696 BMP2KQ9NSY1 1161 aaPredicted RBP13.54□□□□□ -0.24
NUP88-201ENST00000225696 NENFQ9UMX5 172 aa13.54□□□□□ -0.24
NUP88-201ENST00000225696 MAP2K2P36507 400 aa13.54□□□□□ -0.24
NUP88-201ENST00000225696 SLC12A3P55017 1021 aa13.54□□□□□ -0.24
NUP88-201ENST00000225696 PPP2R2AP63151 447 aa13.54□□□□□ -0.24
NUP88-201ENST00000225696 PICALMQ13492 652 aa13.54□□□□□ -0.24
NUP88-201ENST00000225696 HYIQ5T013 277 aa13.54□□□□□ -0.24
NUP88-201ENST00000225696 DPP8Q6V1X1 898 aaPredicted RBP13.54□□□□□ -0.24
NUP88-201ENST00000225696 KCTD1Q719H9 257 aa13.54□□□□□ -0.24
NUP88-201ENST00000225696 PEX26Q7Z412 305 aa13.54□□□□□ -0.24
NUP88-201ENST00000225696 NT5DC3Q86UY8 548 aa13.54□□□□□ -0.24
NUP88-201ENST00000225696 P2RX7Q99572 595 aaKnown RBP13.54□□□□□ -0.24
NUP88-201ENST00000225696 HAUS2Q9NVX0 235 aa13.54□□□□□ -0.24
NUP88-201ENST00000225696 RTCBQ9Y3I0 505 aaKnown RBP13.54□□□□□ -0.24
NUP88-201ENST00000225696 COL5A3P25940 1745 aaPredicted RBP13.53□□□□□ -0.24
NUP88-201ENST00000225696 RSPH10B2B2RC85 870 aa13.53□□□□□ -0.24
NUP88-201ENST00000225696 CES2O00748 559 aa13.53□□□□□ -0.24
NUP88-201ENST00000225696 OPLAHO14841 1288 aa13.53□□□□□ -0.24
NUP88-201ENST00000225696 CETN3O15182 167 aa13.53□□□□□ -0.24
NUP88-201ENST00000225696 SHBGP04278 402 aa13.53□□□□□ -0.24
NUP88-201ENST00000225696 RSPH10BP0C881 870 aa13.53□□□□□ -0.24
NUP88-201ENST00000225696 NT5C2P49902 561 aa13.53□□□□□ -0.24
NUP88-201ENST00000225696 POU5F1Q01860 360 aaKnown RBP13.53□□□□□ -0.24
NUP88-201ENST00000225696 SEPT2Q15019 361 aa13.53□□□□□ -0.24
NUP88-201ENST00000225696 EXOC3L4Q17RC7 722 aa13.53□□□□□ -0.24
NUP88-201ENST00000225696 DCAF12L1Q5VU92 463 aa13.53□□□□□ -0.24
NUP88-201ENST00000225696 TPTE2Q6XPS3 522 aa13.53□□□□□ -0.24
NUP88-201ENST00000225696 SLFN11Q7Z7L1 901 aa13.53□□□□□ -0.24
NUP88-201ENST00000225696 DAAM2Q86T65 1068 aa13.53□□□□□ -0.24
NUP88-201ENST00000225696 ATP8B4Q8TF62 1192 aa13.53□□□□□ -0.24
NUP88-201ENST00000225696 NYXQ9GZU5 481 aa13.53□□□□□ -0.24
NUP88-201ENST00000225696 CXorf56Q9H5V9 222 aa13.53□□□□□ -0.24
NUP88-201ENST00000225696 NARFQ9UHQ1 456 aa13.53□□□□□ -0.24
NUP88-201ENST00000225696 SRCAPQ6ZRS2 3230 aa13.53□□□□□ -0.24
NUP88-201ENST00000225696 IGSF9BQ9UPX0 1349 aa13.53□□□□□ -0.24
NUP88-201ENST00000225696 PNMA6FA0A0J9YX94 578 aa13.52□□□□□ -0.24
NUP88-201ENST00000225696 FRMD3A2A2Y4 597 aa13.52□□□□□ -0.24
NUP88-201ENST00000225696 F8VZ95 297 aa13.52□□□□□ -0.24
NUP88-201ENST00000225696 F8W031 263 aaPredicted RBP13.52□□□□□ -0.24
NUP88-201ENST00000225696 KRT18P05783 430 aaKnown RBP13.52□□□□□ -0.24
NUP88-201ENST00000225696 LDHCP07864 332 aa13.52□□□□□ -0.24
NUP88-201ENST00000225696 SNHG28P0DPA3 235 aa13.52□□□□□ -0.24
NUP88-201ENST00000225696 USP8P40818 1118 aa13.52□□□□□ -0.24
NUP88-201ENST00000225696 PABPC4Q13310 644 aaKnown RBP eCLIP13.52□□□□□ -0.24
NUP88-201ENST00000225696 EPHA7Q15375 998 aa13.52□□□□□ -0.24
NUP88-201ENST00000225696 ANKRD20A8PQ5CZ79 823 aa13.52□□□□□ -0.24
NUP88-201ENST00000225696 TCERG1LQ5VWI1 586 aa13.52□□□□□ -0.24
NUP88-201ENST00000225696 CCDC121Q6ZUS5 278 aa13.52□□□□□ -0.24
NUP88-201ENST00000225696 SFR1Q86XK3 245 aa13.52□□□□□ -0.24
NUP88-201ENST00000225696 LRRC45Q96CN5 670 aa13.52□□□□□ -0.24
NUP88-201ENST00000225696 CCDC114Q96M63 670 aa13.52□□□□□ -0.24
NUP88-201ENST00000225696 PSTPIP2Q9H939 334 aa13.52□□□□□ -0.24
NUP88-201ENST00000225696 ARMCX3Q9UH62 379 aaPredicted RBP13.52□□□□□ -0.24
NUP88-201ENST00000225696 PPP1R9AQ9ULJ8 1098 aa13.52□□□□□ -0.24
NUP88-201ENST00000225696 ATP8A1Q9Y2Q0 1164 aa13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms