RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 CCT8L1PA6NM43 557 aa11.21□□□□□ -0.61
VCL-201ENST00000211998 STAM2O75886 525 aa11.21□□□□□ -0.61
VCL-201ENST00000211998 TPP2P29144 1249 aaPredicted RBP11.21□□□□□ -0.61
VCL-201ENST00000211998 PGM1P36871 562 aa11.21□□□□□ -0.61
VCL-201ENST00000211998 ECE1P42892 770 aa11.21□□□□□ -0.61
VCL-201ENST00000211998 SUGP1Q8IWZ8 645 aaKnown RBP11.21□□□□□ -0.61
VCL-201ENST00000211998 PROCA1Q8NCQ7 364 aaPredicted RBP11.21□□□□□ -0.61
VCL-201ENST00000211998 CCDC124Q96CT7 223 aaKnown RBP11.21□□□□□ -0.61
VCL-201ENST00000211998 RIOK1Q9BRS2 568 aaKnown RBP11.21□□□□□ -0.61
VCL-201ENST00000211998 BEGAINQ9BUH8 593 aa11.21□□□□□ -0.61
VCL-201ENST00000211998 GPR108Q9NPR9 543 aa11.21□□□□□ -0.61
VCL-201ENST00000211998 ZFATQ9P243 1243 aa11.21□□□□□ -0.61
VCL-201ENST00000211998 ATP10DQ9P241 1426 aa11.21□□□□□ -0.61
VCL-201ENST00000211998 PDE5AO76074 875 aa11.21□□□□□ -0.62
VCL-201ENST00000211998 FAM107AO95990 144 aa11.21□□□□□ -0.62
VCL-201ENST00000211998 IQCB1Q15051 598 aa11.21□□□□□ -0.62
VCL-201ENST00000211998 NEK8Q86SG6 692 aa11.21□□□□□ -0.62
VCL-201ENST00000211998 SPATA4Q8NEY3 305 aa11.21□□□□□ -0.62
VCL-201ENST00000211998 ING2Q9H160 280 aa11.21□□□□□ -0.62
VCL-201ENST00000211998 MAGEF1Q9HAY2 307 aa11.21□□□□□ -0.62
VCL-201ENST00000211998 GIMAP4Q9NUV9 329 aa11.21□□□□□ -0.62
VCL-201ENST00000211998 ADAMTS1Q9UHI8 967 aa11.21□□□□□ -0.62
VCL-201ENST00000211998 APOBEC2Q9Y235 224 aaKnown RBP11.21□□□□□ -0.62
VCL-201ENST00000211998 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.21□□□□□ -0.62
VCL-201ENST00000211998 IQANK1A0A1B0GTG1 560 aa11.21□□□□□ -0.62
VCL-201ENST00000211998 H7C0C1 242 aa11.21□□□□□ -0.62
VCL-201ENST00000211998 CIAO1O76071 339 aa11.21□□□□□ -0.62
VCL-201ENST00000211998 CYP21A2P08686 494 aa11.21□□□□□ -0.62
VCL-201ENST00000211998 H2AFXP16104 143 aaPredicted RBP11.21□□□□□ -0.62
VCL-201ENST00000211998 MAPK4P31152 587 aa11.21□□□□□ -0.62
VCL-201ENST00000211998 ATP5OP48047 213 aa11.21□□□□□ -0.62
VCL-201ENST00000211998 UBE3CQ15386 1083 aa11.21□□□□□ -0.62
VCL-201ENST00000211998 BZW1Q7L1Q6 419 aaKnown RBP11.21□□□□□ -0.62
VCL-201ENST00000211998 TMC4Q7Z404 712 aa11.21□□□□□ -0.62
VCL-201ENST00000211998 PNMA1Q8ND90 353 aa11.21□□□□□ -0.62
VCL-201ENST00000211998 USP15Q9Y4E8 981 aaPredicted RBP11.21□□□□□ -0.62
VCL-201ENST00000211998 IGF2BP3O00425 579 aaKnown RBP eCLIP11.2□□□□□ -0.62
VCL-201ENST00000211998 SCG2P13521 617 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 CHN1P15882 459 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 DAB2P98082 770 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 MKRN3Q13064 507 aaKnown RBP11.2□□□□□ -0.62
VCL-201ENST00000211998 PTGISQ16647 500 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 LRRC36Q1X8D7 754 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 RAPH1Q70E73 1250 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 WDR75Q8IWA0 830 aaKnown RBP11.2□□□□□ -0.62
VCL-201ENST00000211998 AATKQ6ZMQ8 1374 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 TNKSO95271 1327 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 PALM3A6NDB9 673 aaPredicted RBP11.2□□□□□ -0.62
VCL-201ENST00000211998 FOSP01100 380 aaPredicted RBP11.2□□□□□ -0.62
VCL-201ENST00000211998 HDAC4P56524 1084 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 NYAP1Q6ZVC0 841 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 ARHGAP22Q7Z5H3 698 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 ZNF280CQ8ND82 737 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 RUBCNQ92622 972 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 FUT8Q9BYC5 575 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 SNX5Q9Y5X3 404 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 GRID2IPA4D2P6 1211 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 GFPT2O94808 682 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 KITP10721 976 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 PYGBP11216 843 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 NSFP46459 744 aaKnown RBP11.2□□□□□ -0.62
VCL-201ENST00000211998 GABPAQ06546 454 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 AP1B1Q10567 949 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 CERKLQ49MI3 558 aaPredicted RBP11.2□□□□□ -0.62
VCL-201ENST00000211998 RARS2Q5T160 578 aaKnown RBP11.2□□□□□ -0.62
VCL-201ENST00000211998 SCYL2Q6P3W7 929 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 FBXO11Q86XK2 927 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 TEKT3Q9BXF9 490 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 NDST4Q9H3R1 872 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 UTP6Q9NYH9 597 aaKnown RBP11.2□□□□□ -0.62
VCL-201ENST00000211998 PDP2Q9P2J9 529 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 FIS1Q9Y3D6 152 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 SYCE1LA8MT33 242 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 ESRRBO95718 433 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 FGAP02671 866 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 AFPP02771 609 aaKnown RBP11.2□□□□□ -0.62
VCL-201ENST00000211998 ACTN1P12814 892 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 NR1H3Q13133 447 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 LRRC41Q15345 812 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 RABGAP1LQ5R372 815 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 FMR1NBQ8N0W7 255 aaPredicted RBP11.2□□□□□ -0.62
VCL-201ENST00000211998 IL17REQ8NFR9 667 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 DDX47Q9H0S4 455 aaKnown RBP11.2□□□□□ -0.62
VCL-201ENST00000211998 VCPKMTQ9H867 229 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 ARHGEF5Q12774 1597 aa11.2□□□□□ -0.62
VCL-201ENST00000211998 CCNE1P24864 410 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 PRKG1Q13976 671 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 CCDC24Q8N4L8 307 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 RMDN2Q96LZ7 410 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 SAYSD1Q9NPB0 183 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 PCDHA12Q9UN75 941 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 TEX33O43247 280 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 CPP00450 1065 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 TNNC2P02585 160 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 HSPA8P11142 646 aaKnown RBP11.19□□□□□ -0.62
VCL-201ENST00000211998 PDHBP11177 359 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 TMOD1P28289 359 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 HSPA9P38646 679 aaKnown RBP11.19□□□□□ -0.62
VCL-201ENST00000211998 NLGN1Q8N2Q7 840 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 PYROXD1Q8WU10 500 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms