RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 PNMA6FA0A0J9YX94 578 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 TTI1O43156 1089 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 GFPT2O94808 682 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 CRY2Q49AN0 593 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 CBWD6Q4V339 395 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 CBWD3Q5JTY5 395 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 CBWD5Q5RIA9 395 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 DHX37Q8IY37 1157 aaKnown RBP11.73□□□□□ -0.53
USP28-201ENST00000003302 LNX1Q8TBB1 728 aaPredicted RBP11.73□□□□□ -0.53
USP28-201ENST00000003302 ETNPPLQ8TBG4 499 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 GLG1Q92896 1179 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 ARHGEF26Q96DR7 871 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 DPH5Q9H2P9 285 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 CEP72Q9P209 647 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 STK17AQ9UEE5 414 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 CEP104O60308 925 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 SLC9C1Q4G0N8 1177 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 GLYCTKQ8IVS8 523 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 EHBP1Q8NDI1 1231 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 KCNMB3Q9NPA1 279 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 PPP1R9AQ9ULJ8 1098 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 PLAAQ9Y263 795 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 SIPA1L1O43166 1804 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 ZBTB5O15062 677 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 TGFB1I1O43294 461 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 TTLL1O95922 423 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 TCP1P17987 556 aaKnown RBP11.72□□□□□ -0.53
USP28-201ENST00000003302 ECE1P42892 770 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 DGKZQ13574 1117 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 COBLL1Q53SF7 1204 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 USP38Q8NB14 1042 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 DHX36Q9H2U1 1008 aaKnown RBP11.72□□□□□ -0.53
USP28-201ENST00000003302 ESYT2A0FGR8 921 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 MAGEA9P43362 315 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 EPHB4P54760 987 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 AMOTL1Q8IY63 956 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 ANO3Q9BYT9 981 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 H0YGN5 161 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 SART1O43290 800 aaKnown RBP11.72□□□□□ -0.53
USP28-201ENST00000003302 SERPING1P05155 500 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 SLC20A2Q08357 652 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 PDIA5Q14554 519 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 CEP85LQ5SZL2 805 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 KAT5Q92993 513 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 CDCA7Q9BWT1 371 aaPredicted RBP11.72□□□□□ -0.53
USP28-201ENST00000003302 PPANQ9NQ55 473 aaKnown RBP11.72□□□□□ -0.53
USP28-201ENST00000003302 TMOD4Q9NZQ9 345 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 NFS1Q9Y697 457 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 ZMYM2Q9UBW7 1377 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 ATMINO43313 823 aaPredicted RBP11.72□□□□□ -0.53
USP28-201ENST00000003302 SHBGP04278 402 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 LSP1P33241 339 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 HSD17B3P37058 310 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 DLG4P78352 724 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 CDC37Q16543 378 aaPredicted RBP11.72□□□□□ -0.53
USP28-201ENST00000003302 TMEM266Q2M3C6 531 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 PPP4R3AQ6IN85 833 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 SLC35C1Q96A29 364 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 COG5Q9UP83 839 aa11.72□□□□□ -0.53
USP28-201ENST00000003302 TCRBV7S2A1N4TA0A589 114 aa11.71□□□□□ -0.53
USP28-201ENST00000003302 HLTFQ14527 1009 aaKnown RBP eCLIP11.71□□□□□ -0.53
USP28-201ENST00000003302 DAB2IPQ5VWQ8 1189 aa11.71□□□□□ -0.53
USP28-201ENST00000003302 ZNF746Q6NUN9 644 aaPredicted RBP11.71□□□□□ -0.53
USP28-201ENST00000003302 CRYGNQ8WXF5 182 aa11.71□□□□□ -0.53
USP28-201ENST00000003302 ALS2CR12Q96Q35 445 aa11.71□□□□□ -0.53
USP28-201ENST00000003302 PKD2L1Q9P0L9 805 aa11.71□□□□□ -0.53
USP28-201ENST00000003302 TMEM59LQ9UK28 342 aa11.71□□□□□ -0.53
USP28-201ENST00000003302 SSU72P8A0A1W2PR75 194 aa11.71□□□□□ -0.53
USP28-201ENST00000003302 CFAP221Q4G0U5 840 aa11.71□□□□□ -0.53
USP28-201ENST00000003302 IQCEQ6IPM2 695 aa11.71□□□□□ -0.53
USP28-201ENST00000003302 CUL5Q93034 780 aa11.71□□□□□ -0.53
USP28-201ENST00000003302 GPR88Q9GZN0 384 aa11.71□□□□□ -0.53
USP28-201ENST00000003302 IVLP07476 585 aa11.71□□□□□ -0.54
USP28-201ENST00000003302 ARHGAP4P98171 946 aa11.71□□□□□ -0.54
USP28-201ENST00000003302 ALKBH5Q6P6C2 394 aaKnown RBP11.71□□□□□ -0.54
USP28-201ENST00000003302 CWC15Q9P013 229 aaKnown RBP11.71□□□□□ -0.54
USP28-201ENST00000003302 MSH4O15457 936 aa11.71□□□□□ -0.54
USP28-201ENST00000003302 PRLRP16471 622 aa11.71□□□□□ -0.54
USP28-201ENST00000003302 TADA2BQ86TJ2 420 aa11.71□□□□□ -0.54
USP28-201ENST00000003302 ALG3Q92685 438 aa11.71□□□□□ -0.54
USP28-201ENST00000003302 WDR18Q9BV38 432 aa11.71□□□□□ -0.54
USP28-201ENST00000003302 TSGA10Q9BZW7 698 aa11.71□□□□□ -0.54
USP28-201ENST00000003302 NOC2LQ9Y3T9 749 aaKnown RBP11.71□□□□□ -0.54
USP28-201ENST00000003302 FOCADQ5VW36 1801 aa11.7□□□□□ -0.54
USP28-201ENST00000003302 KRT18P05783 430 aaKnown RBP11.7□□□□□ -0.54
USP28-201ENST00000003302 GSTO1P78417 241 aa11.7□□□□□ -0.54
USP28-201ENST00000003302 SLC20A1Q8WUM9 679 aa11.7□□□□□ -0.54
USP28-201ENST00000003302 CAVIN3Q969G5 261 aa11.7□□□□□ -0.54
USP28-201ENST00000003302 BTBD6Q96KE9 485 aa11.7□□□□□ -0.54
USP28-201ENST00000003302 LZTS2Q9BRK4 669 aa11.7□□□□□ -0.54
USP28-201ENST00000003302 MAGEF1Q9HAY2 307 aa11.7□□□□□ -0.54
USP28-201ENST00000003302 BCCIPQ9P287 314 aaKnown RBP eCLIP11.7□□□□□ -0.54
USP28-201ENST00000003302 FAM198AQ9UFP1 575 aa11.7□□□□□ -0.54
USP28-201ENST00000003302 NDUFAB1O14561 156 aa11.7□□□□□ -0.54
USP28-201ENST00000003302 KIF4AO95239 1232 aa11.7□□□□□ -0.54
USP28-201ENST00000003302 CYP3A4P08684 503 aa11.7□□□□□ -0.54
USP28-201ENST00000003302 PAFAH1B1P43034 410 aa11.7□□□□□ -0.54
USP28-201ENST00000003302 PPFIA1Q13136 1202 aa11.7□□□□□ -0.54
USP28-201ENST00000003302 ITGB3BPQ13352 177 aaPredicted RBP11.7□□□□□ -0.54
USP28-201ENST00000003302 ZYXQ15942 572 aaKnown RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms