RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 RPS6KA3P51812 740 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 LONRF3Q496Y0 759 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 KAZNQ674X7 775 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 MGARPQ8TDB4 240 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 ATXN2LQ8WWM7 1075 aaKnown RBP5.02□□□□□ -1.61
SCN1A-220ENST00000641603 ZNF212Q9UDV6 495 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 ATP10AO60312 1499 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 NPTXRO95502 500 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 FESP07332 822 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 KRT10P13645 584 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 CCDC144BQ3MJ40 725 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 C8orf58Q8NAV2 365 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 RFWD2Q8NHY2 731 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 SCG3Q8WXD2 468 aaKnown RBP5.02□□□□□ -1.61
SCN1A-220ENST00000641603 PPWD1Q96BP3 646 aaKnown RBP5.02□□□□□ -1.61
SCN1A-220ENST00000641603 FAM167BQ9BTA0 163 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 PALM3A6NDB9 673 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-220ENST00000641603 LSM1O15116 133 aaKnown RBP5.02□□□□□ -1.61
SCN1A-220ENST00000641603 S100BP04271 92 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-220ENST00000641603 ALOX5P09917 674 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 MLH1P40692 756 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 ARFIP2P53365 341 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 FKBP3Q00688 224 aaKnown RBP5.02□□□□□ -1.61
SCN1A-220ENST00000641603 EHHADHQ08426 723 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 TCP11X2Q5H9J9 407 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 ARMCX5Q6P1M9 558 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 ANKRD13DQ6ZTN6 518 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 VPS50Q96JG6 964 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 EIF2AK3Q9NZJ5 1116 aaKnown RBP5.02□□□□□ -1.61
SCN1A-220ENST00000641603 DTNBO60941 627 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 CRCPO75575 148 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 NSFP46459 744 aaKnown RBP5.02□□□□□ -1.61
SCN1A-220ENST00000641603 KIF23Q02241 960 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-220ENST00000641603 ARID5AQ03989 594 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 TRADDQ15628 312 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 SH3TC2Q8TF17 1288 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 U2AF1L4Q8WU68 220 aaKnown RBP5.02□□□□□ -1.61
SCN1A-220ENST00000641603 TUBGCP3Q96CW5 907 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 TRIM56Q9BRZ2 755 aaKnown RBP5.02□□□□□ -1.61
SCN1A-220ENST00000641603 POLR3CQ9BUI4 534 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-220ENST00000641603 BRD8Q9H0E9 1235 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 RAD21L1Q9H4I0 556 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 TMOD4Q9NZQ9 345 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 MPP6Q9NZW5 540 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 DLGAP2Q9P1A6 1054 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 COMMD10Q9Y6G5 202 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 ATP7BP35670 1465 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 PFDN6O15212 129 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 CPA3P15088 417 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 HSP90AA4PQ58FG1 418 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 GJC2Q5T442 439 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-220ENST00000641603 CD302Q8IX05 232 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 NSUN7Q8NE18 718 aaKnown RBP5.01□□□□□ -1.61
SCN1A-220ENST00000641603 ZNF398Q8TD17 642 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 CALML6Q8TD86 181 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 RSAD2Q8WXG1 361 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 CABP5Q9NP86 173 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 LIMA1Q9UHB6 759 aaKnown RBP5.01□□□□□ -1.61
SCN1A-220ENST00000641603 PTPRTO14522 1441 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 CCDC162PA2VCL2 907 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 WASLO00401 505 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-220ENST00000641603 FUKQ8N0W3 1084 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 OR9Q1Q8NGQ5 310 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 PHF23Q9BUL5 403 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-220ENST00000641603 SH3GLB2Q9NR46 395 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 SERPINA10Q9UK55 444 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 PLA2R1Q13018 1463 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 KLHL41O60662 606 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 KLHL2O95198 593 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 PLTPP55058 493 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 ARPC4P59998 168 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 UAP1Q16222 522 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-220ENST00000641603 TOGARAM2Q6ZUX3 1019 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 ACRBPQ8NEB7 543 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 EPC1Q9H2F5 836 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 FAM207AQ9NSI2 230 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-220ENST00000641603 CARD8Q9Y2G2 431 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 PCDH11XQ9BZA7 1347 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 RASA4BC9J798 803 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 RASA4O43374 803 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 TNFAIP8O95379 198 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 VPS41P49754 854 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 SGO2Q562F6 1265 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 PAPD7Q5XG87 772 aaKnown RBP5.01□□□□□ -1.61
SCN1A-220ENST00000641603 C16orf71Q8IYS4 520 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-220ENST00000641603 RASSF5Q8WWW0 418 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 TUBE1Q9UJT0 475 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 SORCS3Q9UPU3 1222 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 KDRP35968 1356 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 ATP10DQ9P241 1426 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 CCDC78A2IDD5 438 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 HLA-DOAP06340 250 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 CHRM1P11229 460 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-220ENST00000641603 S100A5P33763 92 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 CCDC15Q0P6D6 951 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 MAB21L3Q8N8X9 362 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 ZFAND2BQ8WV99 257 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 SCFD1Q8WVM8 642 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 MTBPQ96DY7 904 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 SERPINB12Q96P63 405 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms