RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 DENND2AQ9ULE3 1009 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 PALD1Q9ULE6 856 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 LOC102724159A0A0B4J2E5 919 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 ATP1A1P05023 1023 aaKnown RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 OCA2Q04671 838 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 SNX17Q15036 470 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 PWP2Q15269 919 aaKnown RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 SURF1Q15526 300 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 EPHA10Q5JZY3 1008 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 SPATA5Q8NB90 893 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 CNNM3Q8NE01 707 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 GLG1Q92896 1179 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 MRPL48Q96GC5 212 aaKnown RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 TMEM237Q96Q45 408 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 KCNS3Q9BQ31 491 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 LLPHQ9BRT6 129 aaKnown RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 CDK19Q9BWU1 502 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 KIF9Q9HAQ2 790 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 ST7Q9NRC1 585 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 TOPORSQ9NS56 1045 aaPredicted RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 KLHL14Q9P2G3 628 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 YLPM1P49750 1951 aaKnown RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 MYO5BQ9ULV0 1848 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 ZMYM2Q9UBW7 1377 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 TLDC2A0PJX2 215 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 KRT86O43790 486 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 ENTPD5O75356 428 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 RPL19P84098 196 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 NCAPHQ15003 741 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 C4orf50Q6ZRC1 276 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 VASH1Q7L8A9 365 aaPredicted RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 FBXO18Q8NFZ0 1043 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 DDX28Q9NUL7 540 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 HCN4Q9Y3Q4 1203 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 CSPG4Q6UVK1 2322 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 TARSL2A2RTX5 802 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 HSPA4LO95757 839 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 KRT4P19013 534 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 CYP2C19P33261 490 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 INHBEP58166 350 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 RAD51AP2Q09MP3 1159 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 SLC12A1Q13621 1099 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 ATAD3BQ5T9A4 648 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 CAMKK1Q8N5S9 505 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 UBL4BQ8N7F7 174 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 ACSF2Q96CM8 615 aaPredicted RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 C8orf76Q96K31 380 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 PPP1R2P1Q96PQ5 205 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 MAGEB5Q9BZ81 275 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 UBE2OQ9C0C9 1292 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 PRDM5Q9NQX1 630 aaPredicted RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 CHCHD3Q9NX63 227 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 PKD2L2Q9NZM6 624 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 STX18Q9P2W9 335 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 DCDC2Q9UHG0 476 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 NSFL1CQ9UNZ2 370 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 SMARCA4P51532 1647 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 GTPBP10A4D1E9 387 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 RASSF9O75901 435 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 TNNI3P19429 210 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 TSC22D1Q15714 1073 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 CWC27Q6UX04 472 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 TRIM72Q6ZMU5 477 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 CCDC149Q6ZUS6 474 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 TLK2Q86UE8 772 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 CFAP61Q8NHU2 1237 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 TFB1MQ8WVM0 346 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 DNAJC1Q96KC8 554 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 PRPF18Q99633 342 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 STMN3Q9NZ72 180 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 DNAJC12Q9UKB3 198 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 PCDHB2Q9Y5E7 798 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 TOP2BQ02880 1626 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 M0R3G1 203 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 APAF1O14727 1248 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 RASGRF2O14827 1237 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 HOXA2O43364 376 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 LZTS3O60299 673 aaPredicted RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 RANBP6O60518 1105 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 MSCO60682 206 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 RNF40O75150 1001 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 POSTNQ15063 836 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 APOA5Q6Q788 366 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 LRRC31Q6UY01 552 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 DSTYKQ6XUX3 929 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 RNF180Q86T96 592 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 PLA2G4DQ86XP0 818 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 DZIP3Q86Y13 1208 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 ARRDC4Q8NCT1 418 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 AHCYL2Q96HN2 611 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 OLFM3Q96PB7 478 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 KLHL31Q9H511 634 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 NEUROD4Q9HD90 331 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 FBXO40Q9UH90 709 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 LZTS1Q9Y250 596 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 TRIP12Q14669 1992 aaPredicted RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 HECW1Q76N89 1606 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 NCOA6Q14686 2063 aaPredicted RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 A0A0B4J269 797 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 SMIM22K7EJ46 135 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms