RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 USP11P51784 963 aa21.87■■□□□ 1.09
CLN3-260ENST00000637578 GRIN2CQ14957 1233 aa21.87■■□□□ 1.09
CLN3-260ENST00000637578 TCTN1Q2MV58 587 aa21.87■■□□□ 1.09
CLN3-260ENST00000637578 MARCH8Q5T0T0 291 aa21.87■■□□□ 1.09
CLN3-260ENST00000637578 GALNT17Q6IS24 598 aa21.87■■□□□ 1.09
CLN3-260ENST00000637578 ABHD15Q6UXT9 468 aa21.87■■□□□ 1.09
CLN3-260ENST00000637578 SLC9A7Q96T83 725 aa21.87■■□□□ 1.09
CLN3-260ENST00000637578 STK36Q9NRP7 1315 aa21.86■■□□□ 1.09
CLN3-260ENST00000637578 CTDNEP1O95476 244 aa21.86■■□□□ 1.09
CLN3-260ENST00000637578 MARK3P27448 753 aa21.86■■□□□ 1.09
CLN3-260ENST00000637578 RABGGTBP53611 331 aa21.86■■□□□ 1.09
CLN3-260ENST00000637578 PPFIA1Q13136 1202 aa21.86■■□□□ 1.09
CLN3-260ENST00000637578 FAM26DQ5JW98 314 aa21.86■■□□□ 1.09
CLN3-260ENST00000637578 AZI2Q9H6S1 392 aa21.86■■□□□ 1.09
CLN3-260ENST00000637578 TBC1D22BQ9NU19 505 aa21.86■■□□□ 1.09
CLN3-260ENST00000637578 CHD9Q3L8U1 2897 aa21.85■■□□□ 1.09
CLN3-260ENST00000637578 ABHD14A-ACY1A0A1B0GW23 586 aa21.85■■□□□ 1.09
CLN3-260ENST00000637578 STAT5BP51692 787 aa21.85■■□□□ 1.09
CLN3-260ENST00000637578 GRIK4Q16099 956 aa21.85■■□□□ 1.09
CLN3-260ENST00000637578 TAF2Q6P1X5 1199 aa21.85■■□□□ 1.09
CLN3-260ENST00000637578 BLIDQ8IZY5 108 aa21.85■■□□□ 1.09
CLN3-260ENST00000637578 ZNF577Q9BSK1 485 aa21.85■■□□□ 1.09
CLN3-260ENST00000637578 RRN3P2A6NIE6 340 aa21.84■■□□□ 1.09
CLN3-260ENST00000637578 SLC26A2P50443 739 aa21.84■■□□□ 1.09
CLN3-260ENST00000637578 WDR5P61964 334 aaKnown RBP21.84■■□□□ 1.09
CLN3-260ENST00000637578 MKRN4PQ13434 485 aaPredicted RBP21.84■■□□□ 1.09
CLN3-260ENST00000637578 ME3Q16798 604 aa21.84■■□□□ 1.09
CLN3-260ENST00000637578 PRR16Q569H4 304 aa21.84■■□□□ 1.09
CLN3-260ENST00000637578 NKX2-4Q9H2Z4 354 aa21.84■■□□□ 1.09
CLN3-260ENST00000637578 INSRRP14616 1297 aa21.83■■□□□ 1.09
CLN3-260ENST00000637578 PLCB4Q15147 1175 aa21.83■■□□□ 1.09
CLN3-260ENST00000637578 RABEP1Q15276 862 aa21.83■■□□□ 1.09
CLN3-260ENST00000637578 PLEKHG4Q58EX7 1191 aa21.83■■□□□ 1.09
CLN3-260ENST00000637578 RUFY4Q6ZNE9 571 aa21.83■■□□□ 1.09
CLN3-260ENST00000637578 HERC6Q8IVU3 1022 aa21.83■■□□□ 1.09
CLN3-260ENST00000637578 TBCKQ8TEA7 893 aa21.83■■□□□ 1.09
CLN3-260ENST00000637578 MYLIPQ8WY64 445 aa21.83■■□□□ 1.09
CLN3-260ENST00000637578 PHF20Q9BVI0 1012 aa21.83■■□□□ 1.09
CLN3-260ENST00000637578 TUBE1Q9UJT0 475 aa21.83■■□□□ 1.09
CLN3-260ENST00000637578 CYP3A7-CYP3A51PA0A087WV96 503 aa21.82■■□□□ 1.08
CLN3-260ENST00000637578 EFCAB14O75071 495 aa21.82■■□□□ 1.08
CLN3-260ENST00000637578 MYOGP15173 224 aa21.82■■□□□ 1.08
CLN3-260ENST00000637578 CYP3A7P24462 503 aa21.82■■□□□ 1.08
CLN3-260ENST00000637578 IKBKEQ14164 716 aa21.82■■□□□ 1.08
CLN3-260ENST00000637578 ZNF746Q6NUN9 644 aaPredicted RBP21.82■■□□□ 1.08
CLN3-260ENST00000637578 TNPO1Q92973 898 aaKnown RBP21.82■■□□□ 1.08
CLN3-260ENST00000637578 SLC28A3Q9HAS3 691 aa21.82■■□□□ 1.08
CLN3-260ENST00000637578 DDX39AO00148 427 aaKnown RBP21.82■■□□□ 1.08
CLN3-260ENST00000637578 CCDC60Q8IWA6 550 aaPredicted RBP21.82■■□□□ 1.08
CLN3-260ENST00000637578 DBF4BQ8NFT6 615 aa21.82■■□□□ 1.08
CLN3-260ENST00000637578 GTF3C6Q969F1 213 aa21.82■■□□□ 1.08
CLN3-260ENST00000637578 OSBPL7Q9BZF2 842 aa21.82■■□□□ 1.08
CLN3-260ENST00000637578 KAT6AQ92794 2004 aa21.81■■□□□ 1.08
CLN3-260ENST00000637578 RBAK-RBAKDNI3L0D1 243 aa21.81■■□□□ 1.08
CLN3-260ENST00000637578 MSH4O15457 936 aa21.81■■□□□ 1.08
CLN3-260ENST00000637578 LARGE1O95461 756 aa21.81■■□□□ 1.08
CLN3-260ENST00000637578 CHRNA1P02708 482 aa21.81■■□□□ 1.08
CLN3-260ENST00000637578 FDPSP14324 419 aaKnown RBP21.81■■□□□ 1.08
CLN3-260ENST00000637578 KCNJ6P48051 423 aa21.81■■□□□ 1.08
CLN3-260ENST00000637578 Q4G0T1 1027 aa21.81■■□□□ 1.08
CLN3-260ENST00000637578 MIS18BP1Q6P0N0 1132 aa21.81■■□□□ 1.08
CLN3-260ENST00000637578 SMAP1Q8IYB5 467 aaPredicted RBP21.81■■□□□ 1.08
CLN3-260ENST00000637578 MBOAT7Q96N66 472 aa21.81■■□□□ 1.08
CLN3-260ENST00000637578 UIMC1Q96RL1 719 aa21.81■■□□□ 1.08
CLN3-260ENST00000637578 KCNJ14Q9UNX9 436 aa21.81■■□□□ 1.08
CLN3-260ENST00000637578 GBF1Q92538 1859 aa21.8■■□□□ 1.08
CLN3-260ENST00000637578 POTEB3A0JP26 581 aa21.8■■□□□ 1.08
CLN3-260ENST00000637578 RPLP2P05387 115 aaKnown RBP21.8■■□□□ 1.08
CLN3-260ENST00000637578 CTSHP09668 335 aa21.8■■□□□ 1.08
CLN3-260ENST00000637578 DEFB103AP81534 67 aa21.8■■□□□ 1.08
CLN3-260ENST00000637578 KRT76Q01546 638 aa21.8■■□□□ 1.08
CLN3-260ENST00000637578 MGAT3Q09327 533 aa21.8■■□□□ 1.08
CLN3-260ENST00000637578 FAM160B1Q5W0V3 765 aa21.8■■□□□ 1.08
CLN3-260ENST00000637578 POTEBQ6S5H4 581 aa21.8■■□□□ 1.08
CLN3-260ENST00000637578 MOXD1Q6UVY6 613 aa21.8■■□□□ 1.08
CLN3-260ENST00000637578 NECAB1Q8N987 351 aa21.8■■□□□ 1.08
CLN3-260ENST00000637578 RIT2Q99578 217 aa21.8■■□□□ 1.08
CLN3-260ENST00000637578 TRPC6Q9Y210 931 aa21.8■■□□□ 1.08
CLN3-260ENST00000637578 MAFBQ9Y5Q3 323 aaPredicted RBP21.8■■□□□ 1.08
CLN3-260ENST00000637578 ATP4AP20648 1035 aa21.79■■□□□ 1.08
CLN3-260ENST00000637578 SWSAP1Q6NVH7 229 aa21.79■■□□□ 1.08
CLN3-260ENST00000637578 KRT25Q7Z3Z0 450 aa21.79■■□□□ 1.08
CLN3-260ENST00000637578 ATP8B4Q8TF62 1192 aa21.79■■□□□ 1.08
CLN3-260ENST00000637578 SLC5A5Q92911 643 aa21.79■■□□□ 1.08
CLN3-260ENST00000637578 ZNF302Q9NR11 478 aa21.79■■□□□ 1.08
CLN3-260ENST00000637578 ORC3Q9UBD5 711 aaPredicted RBP21.79■■□□□ 1.08
CLN3-260ENST00000637578 PCDHA2Q9Y5H9 948 aa21.79■■□□□ 1.08
CLN3-260ENST00000637578 PCDHA10Q9Y5I2 948 aa21.79■■□□□ 1.08
CLN3-260ENST00000637578 CHD7Q9P2D1 2997 aa21.79■■□□□ 1.08
CLN3-260ENST00000637578 BACH1O14867 736 aa21.78■■□□□ 1.08
CLN3-260ENST00000637578 HBP1O60381 514 aa21.78■■□□□ 1.08
CLN3-260ENST00000637578 DTNBO60941 627 aa21.78■■□□□ 1.08
CLN3-260ENST00000637578 FOSL2P15408 326 aa21.78■■□□□ 1.08
CLN3-260ENST00000637578 XBP1P17861 261 aa21.78■■□□□ 1.08
CLN3-260ENST00000637578 IGBP1P78318 339 aa21.78■■□□□ 1.08
CLN3-260ENST00000637578 NONOQ15233 471 aaKnown RBP eCLIP21.78■■□□□ 1.08
CLN3-260ENST00000637578 RSPH3Q86UC2 560 aa21.78■■□□□ 1.08
CLN3-260ENST00000637578 DNAJB3Q8WWF6 145 aa21.78■■□□□ 1.08
CLN3-260ENST00000637578 WASF1Q92558 559 aa21.78■■□□□ 1.08
CLN3-260ENST00000637578 SEPT8Q92599 483 aa21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms