RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 RGS20O76081 388 aa11.76□□□□□ -0.53
CLN3-248ENST00000636355 SLITRK3O94933 977 aa11.76□□□□□ -0.53
CLN3-248ENST00000636355 SLC10A3P09131 477 aa11.76□□□□□ -0.53
CLN3-248ENST00000636355 CD44P16070 742 aaKnown RBP11.76□□□□□ -0.53
CLN3-248ENST00000636355 MAPK4P31152 587 aa11.76□□□□□ -0.53
CLN3-248ENST00000636355 PRCPP42785 496 aa11.76□□□□□ -0.53
CLN3-248ENST00000636355 QARSP47897 775 aaKnown RBP11.76□□□□□ -0.53
CLN3-248ENST00000636355 PSMC5P62195 406 aa11.76□□□□□ -0.53
CLN3-248ENST00000636355 CYP4A11Q02928 519 aa11.76□□□□□ -0.53
CLN3-248ENST00000636355 COASYQ13057 564 aa11.76□□□□□ -0.53
CLN3-248ENST00000636355 ISM2Q6H9L7 571 aa11.76□□□□□ -0.53
CLN3-248ENST00000636355 PPP4R3CPQ6ZMV5 832 aa11.76□□□□□ -0.53
CLN3-248ENST00000636355 SAPCD2Q86UD0 394 aa11.76□□□□□ -0.53
CLN3-248ENST00000636355 FAM114A1Q8IWE2 563 aa11.76□□□□□ -0.53
CLN3-248ENST00000636355 SMC1BQ8NDV3 1235 aa11.76□□□□□ -0.53
CLN3-248ENST00000636355 NELFBQ8WX92 580 aa11.76□□□□□ -0.53
CLN3-248ENST00000636355 DYDC2Q96IM9 177 aa11.76□□□□□ -0.53
CLN3-248ENST00000636355 THAP9Q9H5L6 903 aa11.76□□□□□ -0.53
CLN3-248ENST00000636355 IMPACTQ9P2X3 320 aa11.76□□□□□ -0.53
CLN3-248ENST00000636355 CTNND2Q9UQB3 1225 aa11.76□□□□□ -0.53
CLN3-248ENST00000636355 PCDHA10Q9Y5I2 948 aa11.76□□□□□ -0.53
CLN3-248ENST00000636355 COL4A3BPQ9Y5P4 624 aa11.76□□□□□ -0.53
CLN3-248ENST00000636355 IGSF9BQ9UPX0 1349 aa11.76□□□□□ -0.53
CLN3-248ENST00000636355 KRT18P05783 430 aaKnown RBP11.75□□□□□ -0.53
CLN3-248ENST00000636355 PSAPP07602 524 aa11.75□□□□□ -0.53
CLN3-248ENST00000636355 PRKCSHP14314 528 aaPredicted RBP11.75□□□□□ -0.53
CLN3-248ENST00000636355 CCNE1P24864 410 aa11.75□□□□□ -0.53
CLN3-248ENST00000636355 EEF1GP26641 437 aaKnown RBP11.75□□□□□ -0.53
CLN3-248ENST00000636355 ZNF131P52739 623 aa11.75□□□□□ -0.53
CLN3-248ENST00000636355 PLCB2Q00722 1185 aa11.75□□□□□ -0.53
CLN3-248ENST00000636355 SREBF2Q12772 1141 aa11.75□□□□□ -0.53
CLN3-248ENST00000636355 ALCAMQ13740 583 aa11.75□□□□□ -0.53
CLN3-248ENST00000636355 NEDD9Q14511 834 aa11.75□□□□□ -0.53
CLN3-248ENST00000636355 STXBP4Q6ZWJ1 553 aa11.75□□□□□ -0.53
CLN3-248ENST00000636355 MSL3Q8N5Y2 521 aaKnown RBP11.75□□□□□ -0.53
CLN3-248ENST00000636355 KIAA0895Q8NCT3 520 aa11.75□□□□□ -0.53
CLN3-248ENST00000636355 SLC17A8Q8NDX2 589 aa11.75□□□□□ -0.53
CLN3-248ENST00000636355 P2RX5Q93086 422 aa11.75□□□□□ -0.53
CLN3-248ENST00000636355 REEP2Q9BRK0 252 aa11.75□□□□□ -0.53
CLN3-248ENST00000636355 BHMT2Q9H2M3 363 aa11.75□□□□□ -0.53
CLN3-248ENST00000636355 ANKEF1Q9NU02 776 aa11.75□□□□□ -0.53
CLN3-248ENST00000636355 PANK4Q9NVE7 773 aa11.75□□□□□ -0.53
CLN3-248ENST00000636355 SLC9A2Q9UBY0 812 aa11.75□□□□□ -0.53
CLN3-248ENST00000636355 DIS3Q9Y2L1 958 aaKnown RBP11.75□□□□□ -0.53
CLN3-248ENST00000636355 GDAQ9Y2T3 454 aa11.75□□□□□ -0.53
CLN3-248ENST00000636355 PPME1Q9Y570 386 aa11.75□□□□□ -0.53
CLN3-248ENST00000636355 TLL2Q9Y6L7 1015 aa11.75□□□□□ -0.53
CLN3-248ENST00000636355 IVNS1ABPQ9Y6Y0 642 aa11.75□□□□□ -0.53
CLN3-248ENST00000636355 CASP8AP2Q9UKL3 1982 aa11.75□□□□□ -0.53
CLN3-248ENST00000636355 MGAMO43451 1857 aa11.74□□□□□ -0.53
CLN3-248ENST00000636355 ARHGEF35A5YM69 484 aa11.74□□□□□ -0.53
CLN3-248ENST00000636355 SOWAHBA6NEL2 793 aa11.74□□□□□ -0.53
CLN3-248ENST00000636355 EIF3DO15371 548 aaKnown RBP eCLIP11.74□□□□□ -0.53
CLN3-248ENST00000636355 AP5Z1O43299 807 aa11.74□□□□□ -0.53
CLN3-248ENST00000636355 FGFR1OPO95684 399 aaKnown RBP11.74□□□□□ -0.53
CLN3-248ENST00000636355 SSBP05455 408 aaKnown RBP eCLIP11.74□□□□□ -0.53
CLN3-248ENST00000636355 CYP2C8P10632 490 aa11.74□□□□□ -0.53
CLN3-248ENST00000636355 IDEP14735 1019 aa11.74□□□□□ -0.53
CLN3-248ENST00000636355 SCP2P22307 547 aa11.74□□□□□ -0.53
CLN3-248ENST00000636355 GSDMDP57764 484 aa11.74□□□□□ -0.53
CLN3-248ENST00000636355 FANCCQ00597 558 aa11.74□□□□□ -0.53
CLN3-248ENST00000636355 CNTN2Q02246 1040 aa11.74□□□□□ -0.53
CLN3-248ENST00000636355 TPD52L1Q16890 204 aaPredicted RBP11.74□□□□□ -0.53
CLN3-248ENST00000636355 BMT2Q1RMZ1 405 aa11.74□□□□□ -0.53
CLN3-248ENST00000636355 KLHL10Q6JEL2 608 aa11.74□□□□□ -0.53
CLN3-248ENST00000636355 RGMBQ6NW40 437 aa11.74□□□□□ -0.53
CLN3-248ENST00000636355 TTI2Q6NXR4 508 aa11.74□□□□□ -0.53
CLN3-248ENST00000636355 MIS18BP1Q6P0N0 1132 aa11.74□□□□□ -0.53
CLN3-248ENST00000636355 TPH2Q8IWU9 490 aa11.74□□□□□ -0.53
CLN3-248ENST00000636355 SMYD4Q8IYR2 804 aaPredicted RBP11.74□□□□□ -0.53
CLN3-248ENST00000636355 MYOCDQ8IZQ8 938 aa11.74□□□□□ -0.53
CLN3-248ENST00000636355 CCDC102AQ96A19 550 aa11.74□□□□□ -0.53
CLN3-248ENST00000636355 FGD4Q96M96 766 aa11.74□□□□□ -0.53
CLN3-248ENST00000636355 MED15Q96RN5 788 aa11.74□□□□□ -0.53
CLN3-248ENST00000636355 FANCLQ9NW38 375 aa11.74□□□□□ -0.53
CLN3-248ENST00000636355 SLC5A4Q9NY91 659 aa11.74□□□□□ -0.53
CLN3-248ENST00000636355 RGL1Q9NZL6 768 aa11.74□□□□□ -0.53
CLN3-248ENST00000636355 SAMM50Q9Y512 469 aa11.74□□□□□ -0.53
CLN3-248ENST00000636355 SIP14410 1827 aa11.74□□□□□ -0.53
CLN3-248ENST00000636355 ATG7O95352 703 aa11.73□□□□□ -0.53
CLN3-248ENST00000636355 CCNE2O96020 404 aa11.73□□□□□ -0.53
CLN3-248ENST00000636355 SERPINC1P01008 464 aa11.73□□□□□ -0.53
CLN3-248ENST00000636355 PTMAP06454 111 aaKnown RBP11.73□□□□□ -0.53
CLN3-248ENST00000636355 HSPA1AP0DMV8 641 aaKnown RBP11.73□□□□□ -0.53
CLN3-248ENST00000636355 HSPA1BP0DMV9 641 aaKnown RBP11.73□□□□□ -0.53
CLN3-248ENST00000636355 MAPTP10636 758 aaKnown RBP11.73□□□□□ -0.53
CLN3-248ENST00000636355 UBA1P22314 1058 aaKnown RBP11.73□□□□□ -0.53
CLN3-248ENST00000636355 ABCD1P33897 745 aa11.73□□□□□ -0.53
CLN3-248ENST00000636355 ZNF157P51786 506 aaPredicted RBP11.73□□□□□ -0.53
CLN3-248ENST00000636355 STK4Q13043 487 aa11.73□□□□□ -0.53
CLN3-248ENST00000636355 GIT2Q14161 759 aa11.73□□□□□ -0.53
CLN3-248ENST00000636355 CTTNQ14247 550 aaKnown RBP11.73□□□□□ -0.53
CLN3-248ENST00000636355 GRB14Q14449 540 aa11.73□□□□□ -0.53
CLN3-248ENST00000636355 ARSHQ5FYA8 562 aa11.73□□□□□ -0.53
CLN3-248ENST00000636355 CENPPQ6IPU0 288 aa11.73□□□□□ -0.53
CLN3-248ENST00000636355 RINT1Q6NUQ1 792 aa11.73□□□□□ -0.53
CLN3-248ENST00000636355 METTL7BQ6UX53 244 aa11.73□□□□□ -0.53
CLN3-248ENST00000636355 C1orf186Q6ZWK4 172 aa11.73□□□□□ -0.53
CLN3-248ENST00000636355 DYMQ7RTS9 669 aa11.73□□□□□ -0.53
CLN3-248ENST00000636355 TRMT44Q8IYL2 757 aaKnown RBP11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms