RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 PRR16Q569H4 304 aa20.54■□□□□ 0.88
CLN3-243ENST00000635973 NIPA1Q7RTP0 329 aa20.54■□□□□ 0.88
CLN3-243ENST00000635973 PHOSPHO2Q8TCD6 241 aa20.54■□□□□ 0.88
CLN3-243ENST00000635973 CRYGNQ8WXF5 182 aa20.54■□□□□ 0.88
CLN3-243ENST00000635973 KCNH7Q9NS40 1196 aa20.54■□□□□ 0.88
CLN3-243ENST00000635973 FAM86B1E9PN63 330 aa20.53■□□□□ 0.88
CLN3-243ENST00000635973 BAIAP3O94812 1187 aa20.53■□□□□ 0.88
CLN3-243ENST00000635973 FAM86B2P0C5J1 330 aa20.53■□□□□ 0.88
CLN3-243ENST00000635973 MYOGP15173 224 aa20.53■□□□□ 0.88
CLN3-243ENST00000635973 SP4Q02446 784 aa20.53■□□□□ 0.88
CLN3-243ENST00000635973 PTK7Q13308 1070 aa20.53■□□□□ 0.88
CLN3-243ENST00000635973 METTL7BQ6UX53 244 aa20.53■□□□□ 0.88
CLN3-243ENST00000635973 CYFIP1Q7L576 1253 aa20.53■□□□□ 0.88
CLN3-243ENST00000635973 NEK8Q86SG6 692 aa20.53■□□□□ 0.88
CLN3-243ENST00000635973 VWCEQ96DN2 955 aa20.53■□□□□ 0.88
CLN3-243ENST00000635973 SENP7Q9BQF6 1050 aa20.53■□□□□ 0.88
CLN3-243ENST00000635973 SDF4Q9BRK5 362 aa20.53■□□□□ 0.88
CLN3-243ENST00000635973 FOXD4L1Q9NU39 408 aa20.53■□□□□ 0.88
CLN3-243ENST00000635973 DOCK5Q9H7D0 1870 aa20.53■□□□□ 0.88
CLN3-243ENST00000635973 HAS3O00219 553 aa20.52■□□□□ 0.88
CLN3-243ENST00000635973 MEIS1O00470 390 aa20.52■□□□□ 0.88
CLN3-243ENST00000635973 ARP10275 920 aa20.52■□□□□ 0.88
CLN3-243ENST00000635973 CKBP12277 381 aa20.52■□□□□ 0.88
CLN3-243ENST00000635973 KCNA2P16389 499 aa20.52■□□□□ 0.88
CLN3-243ENST00000635973 CIITAP33076 1130 aa20.52■□□□□ 0.88
CLN3-243ENST00000635973 LETM2Q2VYF4 491 aa20.52■□□□□ 0.88
CLN3-243ENST00000635973 TET1Q8NFU7 2136 aa20.52■□□□□ 0.88
CLN3-243ENST00000635973 AGO4Q9HCK5 861 aaKnown RBP20.52■□□□□ 0.88
CLN3-243ENST00000635973 H3BRB1 525 aa20.51■□□□□ 0.87
CLN3-243ENST00000635973 HOXD8P13378 290 aaPredicted RBP20.51■□□□□ 0.87
CLN3-243ENST00000635973 MCTP1Q6DN14 999 aa20.51■□□□□ 0.87
CLN3-243ENST00000635973 USP38Q8NB14 1042 aa20.51■□□□□ 0.87
CLN3-243ENST00000635973 TNFRSF25Q93038 417 aa20.51■□□□□ 0.87
CLN3-243ENST00000635973 INTS4Q96HW7 963 aaKnown RBP20.51■□□□□ 0.87
CLN3-243ENST00000635973 ZNF577Q9BSK1 485 aa20.51■□□□□ 0.87
CLN3-243ENST00000635973 TUT1Q9H6E5 874 aaKnown RBP20.51■□□□□ 0.87
CLN3-243ENST00000635973 TCEAL9Q9UHQ7 104 aa20.51■□□□□ 0.87
CLN3-243ENST00000635973 KAT6AQ92794 2004 aa20.5■□□□□ 0.87
CLN3-243ENST00000635973 IGLV3-22A0A075B6J6 115 aa20.5■□□□□ 0.87
CLN3-243ENST00000635973 FAM205CA6NFA0 338 aa20.5■□□□□ 0.87
CLN3-243ENST00000635973 ATP9AO75110 1047 aa20.5■□□□□ 0.87
CLN3-243ENST00000635973 TDP2O95551 362 aa20.5■□□□□ 0.87
CLN3-243ENST00000635973 CA3P07451 260 aa20.5■□□□□ 0.87
CLN3-243ENST00000635973 CCDC85BQ15834 202 aaPredicted RBP20.5■□□□□ 0.87
CLN3-243ENST00000635973 EARS2Q5JPH6 523 aaKnown RBP20.5■□□□□ 0.87
CLN3-243ENST00000635973 LARP1BQ659C4 914 aaKnown RBP20.5■□□□□ 0.87
CLN3-243ENST00000635973 CNKSR3Q6P9H4 555 aa20.5■□□□□ 0.87
CLN3-243ENST00000635973 HERC6Q8IVU3 1022 aa20.5■□□□□ 0.87
CLN3-243ENST00000635973 DHX38Q92620 1227 aaKnown RBP20.5■□□□□ 0.87
CLN3-243ENST00000635973 SYMPKQ92797 1274 aaKnown RBP20.5■□□□□ 0.87
CLN3-243ENST00000635973 UIMC1Q96RL1 719 aa20.5■□□□□ 0.87
CLN3-243ENST00000635973 CTAGE1Q96RT6 745 aa20.5■□□□□ 0.87
CLN3-243ENST00000635973 NAP1L4Q99733 375 aaKnown RBP20.5■□□□□ 0.87
CLN3-243ENST00000635973 ZBED2Q9BTP6 218 aa20.5■□□□□ 0.87
CLN3-243ENST00000635973 FOXP1Q9H334 677 aaPredicted RBP20.5■□□□□ 0.87
CLN3-243ENST00000635973 JPH1Q9HDC5 661 aaPredicted RBP20.5■□□□□ 0.87
CLN3-243ENST00000635973 PRUNE2Q8WUY3 3088 aa20.49■□□□□ 0.87
CLN3-243ENST00000635973 C17orf102A2RUQ5 167 aa20.49■□□□□ 0.87
CLN3-243ENST00000635973 IPO5O00410 1097 aaKnown RBP20.49■□□□□ 0.87
CLN3-243ENST00000635973 CCNT1O60563 726 aaKnown RBP20.49■□□□□ 0.87
CLN3-243ENST00000635973 LGALS2P05162 132 aa20.49■□□□□ 0.87
CLN3-243ENST00000635973 RBL2Q08999 1139 aa20.49■□□□□ 0.87
CLN3-243ENST00000635973 MOXD1Q6UVY6 613 aa20.49■□□□□ 0.87
CLN3-243ENST00000635973 ATP6V0A1Q93050 837 aa20.49■□□□□ 0.87
CLN3-243ENST00000635973 C16orf70Q9BSU1 422 aa20.49■□□□□ 0.87
CLN3-243ENST00000635973 TSPYL2Q9H2G4 693 aaPredicted RBP20.49■□□□□ 0.87
CLN3-243ENST00000635973 BCAS3Q9H6U6 928 aa20.49■□□□□ 0.87
CLN3-243ENST00000635973 SLC9A2Q9UBY0 812 aa20.49■□□□□ 0.87
CLN3-243ENST00000635973 DDX25Q9UHL0 483 aaKnown RBP20.49■□□□□ 0.87
CLN3-243ENST00000635973 ZNF215Q9UL58 517 aaPredicted RBP20.49■□□□□ 0.87
CLN3-243ENST00000635973 DDX39AO00148 427 aaKnown RBP20.48■□□□□ 0.87
CLN3-243ENST00000635973 TLL1O43897 1013 aa20.48■□□□□ 0.87
CLN3-243ENST00000635973 GNAT1P11488 350 aa20.48■□□□□ 0.87
CLN3-243ENST00000635973 GCFC2P16383 781 aaKnown RBP20.48■□□□□ 0.87
CLN3-243ENST00000635973 PDCP20941 246 aa20.48■□□□□ 0.87
CLN3-243ENST00000635973 THPOP40225 353 aa20.48■□□□□ 0.87
CLN3-243ENST00000635973 ZNF200P98182 395 aaPredicted RBP20.48■□□□□ 0.87
CLN3-243ENST00000635973 IKBKEQ14164 716 aa20.48■□□□□ 0.87
CLN3-243ENST00000635973 ADGRE1Q14246 886 aa20.48■□□□□ 0.87
CLN3-243ENST00000635973 NOSTRINQ8IVI9 506 aa20.48■□□□□ 0.87
CLN3-243ENST00000635973 MICALL1Q8N3F8 863 aa20.48■□□□□ 0.87
CLN3-243ENST00000635973 NFASCO94856 1347 aa20.48■□□□□ 0.87
CLN3-243ENST00000635973 CYP3A7-CYP3A51PA0A087WV96 503 aa20.47■□□□□ 0.87
CLN3-243ENST00000635973 EDIL3O43854 480 aa20.47■□□□□ 0.87
CLN3-243ENST00000635973 EFCAB14O75071 495 aa20.47■□□□□ 0.87
CLN3-243ENST00000635973 SMIM10L2AP0DMW4 78 aa20.47■□□□□ 0.87
CLN3-243ENST00000635973 SMIM10L2BP0DMW5 78 aa20.47■□□□□ 0.87
CLN3-243ENST00000635973 ATP2B1P20020 1258 aa20.47■□□□□ 0.87
CLN3-243ENST00000635973 CYP3A7P24462 503 aa20.47■□□□□ 0.87
CLN3-243ENST00000635973 ITGB3BPQ13352 177 aaPredicted RBP20.47■□□□□ 0.87
CLN3-243ENST00000635973 Q4G0T1 1027 aa20.47■□□□□ 0.87
CLN3-243ENST00000635973 ZNF618Q5T7W0 954 aa20.47■□□□□ 0.87
CLN3-243ENST00000635973 UTP14CQ5TAP6 766 aaKnown RBP20.47■□□□□ 0.87
CLN3-243ENST00000635973 LENG9Q96B70 501 aa20.47■□□□□ 0.87
CLN3-243ENST00000635973 GPR20Q99678 358 aa20.47■□□□□ 0.87
CLN3-243ENST00000635973 CERS4Q9HA82 394 aa20.47■□□□□ 0.87
CLN3-243ENST00000635973 NOL7Q9UMY1 257 aaKnown RBP20.47■□□□□ 0.87
CLN3-243ENST00000635973 EMSYQ7Z589 1322 aa20.47■□□□□ 0.87
CLN3-243ENST00000635973 ABHD14A-ACY1A0A1B0GW23 586 aa20.46■□□□□ 0.87
CLN3-243ENST00000635973 VPS37CA5D8V6 355 aaPredicted RBP20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms