RNA–Protein interactions for RNA: ENST00000623985.3

LINC00643-206, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 864 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-206ENST00000623985 SLC28A3Q9HAS3 691 aa16.85■□□□□ 0.29
LINC00643-206ENST00000623985 YBX2Q9Y2T7 364 aaKnown RBP16.85■□□□□ 0.29
LINC00643-206ENST00000623985 STK36Q9NRP7 1315 aa16.85■□□□□ 0.29
LINC00643-206ENST00000623985 RABGGTBP53611 331 aa16.84■□□□□ 0.29
LINC00643-206ENST00000623985 NLRP5P59047 1200 aa16.84■□□□□ 0.29
LINC00643-206ENST00000623985 WDR5P61964 334 aaKnown RBP16.84■□□□□ 0.29
LINC00643-206ENST00000623985 SCRN1Q12765 414 aa16.84■□□□□ 0.29
LINC00643-206ENST00000623985 GRIN2CQ14957 1233 aa16.84■□□□□ 0.29
LINC00643-206ENST00000623985 GRIK4Q16099 956 aa16.84■□□□□ 0.29
LINC00643-206ENST00000623985 TAF2Q6P1X5 1199 aa16.84■□□□□ 0.29
LINC00643-206ENST00000623985 PCYT2Q99447 389 aa16.84■□□□□ 0.29
LINC00643-206ENST00000623985 SLKQ9H2G2 1235 aaPredicted RBP16.84■□□□□ 0.29
LINC00643-206ENST00000623985 TUBE1Q9UJT0 475 aa16.84■□□□□ 0.29
LINC00643-206ENST00000623985 ABHD14A-ACY1A0A1B0GW23 586 aa16.83■□□□□ 0.28
LINC00643-206ENST00000623985 IPO5O00410 1097 aaKnown RBP16.83■□□□□ 0.28
LINC00643-206ENST00000623985 ATG7O95352 703 aa16.83■□□□□ 0.28
LINC00643-206ENST00000623985 CIITAP33076 1130 aa16.83■□□□□ 0.28
LINC00643-206ENST00000623985 SLC26A2P50443 739 aa16.83■□□□□ 0.28
LINC00643-206ENST00000623985 PPP2R2DQ66LE6 453 aa16.83■□□□□ 0.28
LINC00643-206ENST00000623985 PLPPR4Q7Z2D5 763 aa16.83■□□□□ 0.28
LINC00643-206ENST00000623985 RPAINQ86UA6 219 aa16.83■□□□□ 0.28
LINC00643-206ENST00000623985 HERC6Q8IVU3 1022 aa16.83■□□□□ 0.28
LINC00643-206ENST00000623985 DAGLBQ8NCG7 672 aa16.83■□□□□ 0.28
LINC00643-206ENST00000623985 TNPO1Q92973 898 aaKnown RBP16.83■□□□□ 0.28
LINC00643-206ENST00000623985 ZNF577Q9BSK1 485 aa16.83■□□□□ 0.28
LINC00643-206ENST00000623985 C22orf23Q9BZE7 217 aa16.83■□□□□ 0.28
LINC00643-206ENST00000623985 TPCN1Q9ULQ1 816 aa16.83■□□□□ 0.28
LINC00643-206ENST00000623985 PCDHA4Q9UN74 947 aa16.83■□□□□ 0.28
LINC00643-206ENST00000623985 A0A0C4DFX4 3053 aa16.83■□□□□ 0.28
LINC00643-206ENST00000623985 TTC3P53804 2025 aa16.82■□□□□ 0.28
LINC00643-206ENST00000623985 IGKV6D-21A0A0A0MT36 114 aa16.82■□□□□ 0.28
LINC00643-206ENST00000623985 MBLAC1A4D2B0 266 aaPredicted RBP16.82■□□□□ 0.28
LINC00643-206ENST00000623985 DDX39AO00148 427 aaKnown RBP16.82■□□□□ 0.28
LINC00643-206ENST00000623985 PFKFB2O60825 505 aa16.82■□□□□ 0.28
LINC00643-206ENST00000623985 RPLP2P05387 115 aaKnown RBP16.82■□□□□ 0.28
LINC00643-206ENST00000623985 CTSHP09668 335 aa16.82■□□□□ 0.28
LINC00643-206ENST00000623985 STAT5BP51692 787 aa16.82■□□□□ 0.28
LINC00643-206ENST00000623985 AK2P54819 239 aa16.82■□□□□ 0.28
LINC00643-206ENST00000623985 IKBKEQ14164 716 aa16.82■□□□□ 0.28
LINC00643-206ENST00000623985 PLEKHG4Q58EX7 1191 aa16.82■□□□□ 0.28
LINC00643-206ENST00000623985 FAM26DQ5JW98 314 aa16.82■□□□□ 0.28
LINC00643-206ENST00000623985 GALNT17Q6IS24 598 aa16.82■□□□□ 0.28
LINC00643-206ENST00000623985 MAFAQ8NHW3 353 aaPredicted RBP16.82■□□□□ 0.28
LINC00643-206ENST00000623985 TBC1D22BQ9NU19 505 aa16.82■□□□□ 0.28
LINC00643-206ENST00000623985 TCEAL9Q9UHQ7 104 aa16.82■□□□□ 0.28
LINC00643-206ENST00000623985 TRPC6Q9Y210 931 aa16.82■□□□□ 0.28
LINC00643-206ENST00000623985 RRN3P2A6NIE6 340 aa16.81■□□□□ 0.28
LINC00643-206ENST00000623985 M0R2N6 131 aa16.81■□□□□ 0.28
LINC00643-206ENST00000623985 DHX15O43143 795 aaKnown RBP16.81■□□□□ 0.28
LINC00643-206ENST00000623985 CCNE2O96020 404 aa16.81■□□□□ 0.28
LINC00643-206ENST00000623985 MYOGP15173 224 aa16.81■□□□□ 0.28
LINC00643-206ENST00000623985 PLCB4Q15147 1175 aa16.81■□□□□ 0.28
LINC00643-206ENST00000623985 TCTN1Q2MV58 587 aa16.81■□□□□ 0.28
LINC00643-206ENST00000623985 PRR16Q569H4 304 aa16.81■□□□□ 0.28
LINC00643-206ENST00000623985 FAM160B1Q5W0V3 765 aa16.81■□□□□ 0.28
LINC00643-206ENST00000623985 ZNF746Q6NUN9 644 aaPredicted RBP16.81■□□□□ 0.28
LINC00643-206ENST00000623985 ABHD15Q6UXT9 468 aa16.81■□□□□ 0.28
LINC00643-206ENST00000623985 RUFY4Q6ZNE9 571 aa16.81■□□□□ 0.28
LINC00643-206ENST00000623985 RSPH3Q86UC2 560 aa16.81■□□□□ 0.28
LINC00643-206ENST00000623985 SMAP1Q8IYB5 467 aaPredicted RBP16.81■□□□□ 0.28
LINC00643-206ENST00000623985 BLIDQ8IZY5 108 aa16.81■□□□□ 0.28
LINC00643-206ENST00000623985 LENG9Q96B70 501 aa16.81■□□□□ 0.28
LINC00643-206ENST00000623985 GAS2L1Q99501 681 aaPredicted RBP16.81■□□□□ 0.28
LINC00643-206ENST00000623985 FNDC1Q4ZHG4 1894 aaPredicted RBP16.81■□□□□ 0.28
LINC00643-206ENST00000623985 KIF28PB7ZC32 967 aa16.8■□□□□ 0.28
LINC00643-206ENST00000623985 CA3P07451 260 aa16.8■□□□□ 0.28
LINC00643-206ENST00000623985 INSRRP14616 1297 aa16.8■□□□□ 0.28
LINC00643-206ENST00000623985 USP11P51784 963 aa16.8■□□□□ 0.28
LINC00643-206ENST00000623985 DEFB103AP81534 67 aa16.8■□□□□ 0.28
LINC00643-206ENST00000623985 KRT76Q01546 638 aa16.8■□□□□ 0.28
LINC00643-206ENST00000623985 MKRN4PQ13434 485 aaPredicted RBP16.8■□□□□ 0.28
LINC00643-206ENST00000623985 NPY5RQ15761 445 aa16.8■□□□□ 0.28
LINC00643-206ENST00000623985 MARCH8Q5T0T0 291 aa16.8■□□□□ 0.28
LINC00643-206ENST00000623985 MIS18BP1Q6P0N0 1132 aa16.8■□□□□ 0.28
LINC00643-206ENST00000623985 CCDC60Q8IWA6 550 aaPredicted RBP16.8■□□□□ 0.28
LINC00643-206ENST00000623985 SLC17A8Q8NDX2 589 aa16.8■□□□□ 0.28
LINC00643-206ENST00000623985 APBB2Q92870 758 aa16.8■□□□□ 0.28
LINC00643-206ENST00000623985 AIFM3Q96NN9 605 aa16.8■□□□□ 0.28
LINC00643-206ENST00000623985 PRDM12Q9H4Q4 367 aa16.8■□□□□ 0.28
LINC00643-206ENST00000623985 COL1A2P08123 1366 aa16.79■□□□□ 0.28
LINC00643-206ENST00000623985 POTEB3A0JP26 581 aa16.79■□□□□ 0.28
LINC00643-206ENST00000623985 BACH1O14867 736 aa16.79■□□□□ 0.28
LINC00643-206ENST00000623985 XBP1P17861 261 aa16.79■□□□□ 0.28
LINC00643-206ENST00000623985 IGBP1P78318 339 aa16.79■□□□□ 0.28
LINC00643-206ENST00000623985 MGAT3Q09327 533 aa16.79■□□□□ 0.28
LINC00643-206ENST00000623985 POTEBQ6S5H4 581 aa16.79■□□□□ 0.28
LINC00643-206ENST00000623985 DBF4BQ8NFT6 615 aa16.79■□□□□ 0.28
LINC00643-206ENST00000623985 TBCKQ8TEA7 893 aa16.79■□□□□ 0.28
LINC00643-206ENST00000623985 SEPT8Q92599 483 aa16.79■□□□□ 0.28
LINC00643-206ENST00000623985 PHF20Q9BVI0 1012 aa16.79■□□□□ 0.28
LINC00643-206ENST00000623985 ZNF302Q9NR11 478 aa16.79■□□□□ 0.28
LINC00643-206ENST00000623985 IGSF9BQ9UPX0 1349 aa16.78■□□□□ 0.28
LINC00643-206ENST00000623985 EDIL3O43854 480 aa16.78■□□□□ 0.28
LINC00643-206ENST00000623985 TLL1O43897 1013 aa16.78■□□□□ 0.28
LINC00643-206ENST00000623985 SEC24BO95487 1268 aa16.78■□□□□ 0.28
LINC00643-206ENST00000623985 MOXD1Q6UVY6 613 aa16.78■□□□□ 0.28
LINC00643-206ENST00000623985 DNAJB3Q8WWF6 145 aa16.78■□□□□ 0.28
LINC00643-206ENST00000623985 GTF3C6Q969F1 213 aa16.78■□□□□ 0.28
LINC00643-206ENST00000623985 IFIH1Q9BYX4 1025 aaKnown RBP16.78■□□□□ 0.28
LINC00643-206ENST00000623985 VCANP13611 3396 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms