RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 CCL15Q16663 113 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 TCP11X2Q5H9J9 407 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 PPP4R3BQ5MIZ7 849 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 IRF2BP1Q8IU81 584 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 MYOCDQ8IZQ8 938 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 ADSSL1Q8N142 457 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 SAAL1Q96ER3 474 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 EPC1Q9H2F5 836 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 KCNMB3Q9NPA1 279 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 TBC1D12O60347 775 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 MKRN4PQ13434 485 aaPredicted RBP11.66□□□□□ -0.54
VPS11-208ENST00000621676 FKBP1CQ5VVH2 108 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 HAUS3Q68CZ6 603 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 CATSPERGQ6ZRH7 1159 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 ANKRD13AQ8IZ07 590 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 LPAR1Q92633 364 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 MOV10L1Q9BXT6 1211 aaKnown RBP11.66□□□□□ -0.54
VPS11-208ENST00000621676 MLXIPQ9HAP2 919 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 HOXC10Q9NYD6 342 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 MYH4Q9Y623 1939 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 SRGAP2CP0DJJ0 459 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 RNASE9P60153 205 aaKnown RBP11.66□□□□□ -0.54
VPS11-208ENST00000621676 AP3B2Q13367 1082 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 TDRD12Q587J7 1177 aaKnown RBP11.66□□□□□ -0.54
VPS11-208ENST00000621676 SPECC1LQ69YQ0 1117 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 PHLDB2Q86SQ0 1253 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 FAM178BQ8IXR5 827 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 SLFN12Q8IYM2 578 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 KIAA1524Q8TCG1 905 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 POP1Q99575 1024 aaKnown RBP11.66□□□□□ -0.54
VPS11-208ENST00000621676 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.66□□□□□ -0.54
VPS11-208ENST00000621676 PXMP2Q9NR77 195 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 RMND1Q9NWS8 449 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 K7ENM7 598 aa11.65□□□□□ -0.54
VPS11-208ENST00000621676 ZNF157P51786 506 aaPredicted RBP11.65□□□□□ -0.54
VPS11-208ENST00000621676 SPAG1Q07617 926 aa11.65□□□□□ -0.54
VPS11-208ENST00000621676 RINT1Q6NUQ1 792 aa11.65□□□□□ -0.54
VPS11-208ENST00000621676 BTNL9Q6UXG8 535 aa11.65□□□□□ -0.54
VPS11-208ENST00000621676 CCDC65Q8IXS2 484 aa11.65□□□□□ -0.54
VPS11-208ENST00000621676 BICD1Q96G01 975 aa11.65□□□□□ -0.54
VPS11-208ENST00000621676 BAG1Q99933 345 aaPredicted RBP11.65□□□□□ -0.54
VPS11-208ENST00000621676 DUSP9Q99956 384 aaKnown RBP11.65□□□□□ -0.54
VPS11-208ENST00000621676 TIAM2Q8IVF5 1701 aa11.65□□□□□ -0.54
VPS11-208ENST00000621676 HIP1RO75146 1068 aa11.65□□□□□ -0.54
VPS11-208ENST00000621676 CLCN1P35523 988 aa11.65□□□□□ -0.54
VPS11-208ENST00000621676 CNNM4Q6P4Q7 775 aa11.65□□□□□ -0.54
VPS11-208ENST00000621676 PADI6Q6TGC4 694 aa11.65□□□□□ -0.54
VPS11-208ENST00000621676 TCHPQ9BT92 498 aa11.65□□□□□ -0.54
VPS11-208ENST00000621676 ACAD9Q9H845 621 aa11.65□□□□□ -0.54
VPS11-208ENST00000621676 CYP39A1Q9NYL5 469 aa11.65□□□□□ -0.54
VPS11-208ENST00000621676 ZHX1Q9UKY1 873 aaPredicted RBP11.65□□□□□ -0.54
VPS11-208ENST00000621676 KIAA0100Q14667 2235 aaKnown RBP11.65□□□□□ -0.54
VPS11-208ENST00000621676 TTC26A0AVF1 554 aa11.65□□□□□ -0.55
VPS11-208ENST00000621676 SMARCA1P28370 1054 aa11.65□□□□□ -0.55
VPS11-208ENST00000621676 FXR2P51116 673 aaKnown RBP eCLIP11.65□□□□□ -0.55
VPS11-208ENST00000621676 SPIRE1Q08AE8 756 aa11.65□□□□□ -0.55
VPS11-208ENST00000621676 GIT2Q14161 759 aa11.65□□□□□ -0.55
VPS11-208ENST00000621676 ARMC9Q7Z3E5 817 aa11.65□□□□□ -0.55
VPS11-208ENST00000621676 DNAJC19Q96DA6 116 aa11.65□□□□□ -0.55
VPS11-208ENST00000621676 AK8Q96MA6 479 aa11.65□□□□□ -0.55
VPS11-208ENST00000621676 SPATC1LQ9H0A9 340 aa11.65□□□□□ -0.55
VPS11-208ENST00000621676 TSKSQ9UJT2 592 aa11.65□□□□□ -0.55
VPS11-208ENST00000621676 GUCA1BQ9UMX6 200 aa11.65□□□□□ -0.55
VPS11-208ENST00000621676 UQCRHLA0A096LP55 91 aa11.64□□□□□ -0.55
VPS11-208ENST00000621676 ENC1O14682 589 aa11.64□□□□□ -0.55
VPS11-208ENST00000621676 RGS20O76081 388 aa11.64□□□□□ -0.55
VPS11-208ENST00000621676 UQCRHP07919 91 aa11.64□□□□□ -0.55
VPS11-208ENST00000621676 DLATP10515 647 aaKnown RBP11.64□□□□□ -0.55
VPS11-208ENST00000621676 CYP2B6P20813 491 aa11.64□□□□□ -0.55
VPS11-208ENST00000621676 ARHGAP44Q17R89 818 aa11.64□□□□□ -0.55
VPS11-208ENST00000621676 RRAGAQ7L523 313 aa11.64□□□□□ -0.55
VPS11-208ENST00000621676 CACNA2D4Q7Z3S7 1137 aa11.64□□□□□ -0.55
VPS11-208ENST00000621676 DPP9Q86TI2 863 aa11.64□□□□□ -0.55
VPS11-208ENST00000621676 SCFD1Q8WVM8 642 aa11.64□□□□□ -0.55
VPS11-208ENST00000621676 VAV3Q9UKW4 847 aa11.64□□□□□ -0.55
VPS11-208ENST00000621676 MACROD2A1Z1Q3 448 aa11.64□□□□□ -0.55
VPS11-208ENST00000621676 LRRIQ4A6NIV6 560 aa11.64□□□□□ -0.55
VPS11-208ENST00000621676 PDHXO00330 501 aa11.64□□□□□ -0.55
VPS11-208ENST00000621676 LAD1O00515 517 aa11.64□□□□□ -0.55
VPS11-208ENST00000621676 NOP56O00567 594 aaKnown RBP11.64□□□□□ -0.55
VPS11-208ENST00000621676 NPM3O75607 178 aaKnown RBP11.64□□□□□ -0.55
VPS11-208ENST00000621676 URI1O94763 535 aaPredicted RBP11.64□□□□□ -0.55
VPS11-208ENST00000621676 PRPHP41219 470 aa11.64□□□□□ -0.55
VPS11-208ENST00000621676 CCZ1BP86790 482 aa11.64□□□□□ -0.55
VPS11-208ENST00000621676 CCZ1P86791 482 aaPredicted RBP11.64□□□□□ -0.55
VPS11-208ENST00000621676 DRP2Q13474 957 aa11.64□□□□□ -0.55
VPS11-208ENST00000621676 KCTD2Q14681 263 aa11.64□□□□□ -0.55
VPS11-208ENST00000621676 PTPN14Q15678 1187 aa11.64□□□□□ -0.55
VPS11-208ENST00000621676 HSDL1Q3SXM5 330 aa11.64□□□□□ -0.55
VPS11-208ENST00000621676 CCDC60Q8IWA6 550 aaPredicted RBP11.64□□□□□ -0.55
VPS11-208ENST00000621676 GIMAP8Q8ND71 665 aaPredicted RBP11.64□□□□□ -0.55
VPS11-208ENST00000621676 MRFAP1L1Q96HT8 127 aa11.64□□□□□ -0.55
VPS11-208ENST00000621676 ACP6Q9NPH0 428 aa11.64□□□□□ -0.55
VPS11-208ENST00000621676 ANKFY1Q9P2R3 1169 aa11.64□□□□□ -0.55
VPS11-208ENST00000621676 GGPS1O95749 300 aa11.63□□□□□ -0.55
VPS11-208ENST00000621676 GCFC2P16383 781 aaKnown RBP11.63□□□□□ -0.55
VPS11-208ENST00000621676 GNG11P61952 73 aa11.63□□□□□ -0.55
VPS11-208ENST00000621676 PPARDQ03181 441 aa11.63□□□□□ -0.55
VPS11-208ENST00000621676 MCF2L2Q86YR7 1114 aa11.63□□□□□ -0.55
VPS11-208ENST00000621676 VSTM4Q8IW00 320 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms