RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 ZNF569Q5MCW4 686 aa23.52■■□□□ 1.36
LIME1-210ENST00000621325 RINT1Q6NUQ1 792 aa23.52■■□□□ 1.36
LIME1-210ENST00000621325 GPIHBP1Q8IV16 184 aa23.52■■□□□ 1.36
LIME1-210ENST00000621325 DDX39AO00148 427 aaKnown RBP23.52■■□□□ 1.36
LIME1-210ENST00000621325 IPO5O00410 1097 aaKnown RBP23.52■■□□□ 1.36
LIME1-210ENST00000621325 MXRA8Q9BRK3 442 aa23.52■■□□□ 1.36
LIME1-210ENST00000621325 RPAP3Q9H6T3 665 aaPredicted RBP23.52■■□□□ 1.36
LIME1-210ENST00000621325 TUFT1Q9NNX1 390 aa23.52■■□□□ 1.36
LIME1-210ENST00000621325 A0A1W2PQJ5 194 aa23.51■■□□□ 1.35
LIME1-210ENST00000621325 PRPF6O94906 941 aaKnown RBP23.51■■□□□ 1.35
LIME1-210ENST00000621325 ANGEL2Q5VTE6 544 aaKnown RBP23.51■■□□□ 1.35
LIME1-210ENST00000621325 EPM2AIP1Q7L775 607 aaPredicted RBP23.51■■□□□ 1.35
LIME1-210ENST00000621325 WNK4Q96J92 1243 aa23.51■■□□□ 1.35
LIME1-210ENST00000621325 HERVK_113P62684 666 aa23.51■■□□□ 1.35
LIME1-210ENST00000621325 CEP63Q96MT8 703 aa23.51■■□□□ 1.35
LIME1-210ENST00000621325 PPP1R9AQ9ULJ8 1098 aa23.51■■□□□ 1.35
LIME1-210ENST00000621325 MRFAP1Q9Y605 127 aa23.51■■□□□ 1.35
LIME1-210ENST00000621325 RPTORQ8N122 1335 aa23.51■■□□□ 1.35
LIME1-210ENST00000621325 KCNMA1Q12791 1236 aa23.5■■□□□ 1.35
LIME1-210ENST00000621325 ADAM9Q13443 819 aa23.5■■□□□ 1.35
LIME1-210ENST00000621325 DHX37Q8IY37 1157 aaKnown RBP23.5■■□□□ 1.35
LIME1-210ENST00000621325 TRPM4Q8TD43 1214 aa23.5■■□□□ 1.35
LIME1-210ENST00000621325 WDR11Q9BZH6 1224 aa23.5■■□□□ 1.35
LIME1-210ENST00000621325 NHEJ1Q9H9Q4 299 aaPredicted RBP23.5■■□□□ 1.35
LIME1-210ENST00000621325 PLEKP08567 350 aaPredicted RBP23.5■■□□□ 1.35
LIME1-210ENST00000621325 SETQ01105 290 aaPredicted RBP23.5■■□□□ 1.35
LIME1-210ENST00000621325 KCNA1Q09470 495 aa23.5■■□□□ 1.35
LIME1-210ENST00000621325 B3GNT9Q6UX72 402 aa23.5■■□□□ 1.35
LIME1-210ENST00000621325 SLC35F6Q8N357 371 aa23.5■■□□□ 1.35
LIME1-210ENST00000621325 KCNH7Q9NS40 1196 aa23.5■■□□□ 1.35
LIME1-210ENST00000621325 ZNHIT6Q9NWK9 470 aaKnown RBP23.5■■□□□ 1.35
LIME1-210ENST00000621325 RBBP6Q7Z6E9 1792 aaKnown RBP23.49■■□□□ 1.35
LIME1-210ENST00000621325 TBCAO75347 108 aaKnown RBP23.49■■□□□ 1.35
LIME1-210ENST00000621325 SYTL5Q8TDW5 730 aaPredicted RBP23.49■■□□□ 1.35
LIME1-210ENST00000621325 KNOP1Q1ED39 458 aaKnown RBP23.49■■□□□ 1.35
LIME1-210ENST00000621325 C1orf186Q6ZWK4 172 aa23.49■■□□□ 1.35
LIME1-210ENST00000621325 TRIM59Q8IWR1 403 aa23.49■■□□□ 1.35
LIME1-210ENST00000621325 ZC3H3Q8IXZ2 948 aaKnown RBP23.49■■□□□ 1.35
LIME1-210ENST00000621325 BANK1Q8NDB2 785 aa23.49■■□□□ 1.35
LIME1-210ENST00000621325 ZNF397Q8NF99 534 aaPredicted RBP23.49■■□□□ 1.35
LIME1-210ENST00000621325 PURBQ96QR8 312 aaKnown RBP23.49■■□□□ 1.35
LIME1-210ENST00000621325 WRNIP1Q96S55 665 aa23.49■■□□□ 1.35
LIME1-210ENST00000621325 TEKT3Q9BXF9 490 aa23.49■■□□□ 1.35
LIME1-210ENST00000621325 NR2F2P24468 414 aa23.48■■□□□ 1.35
LIME1-210ENST00000621325 SLC20A2Q08357 652 aa23.48■■□□□ 1.35
LIME1-210ENST00000621325 MNS1Q8NEH6 495 aa23.48■■□□□ 1.35
LIME1-210ENST00000621325 TAAR1Q96RJ0 339 aa23.48■■□□□ 1.35
LIME1-210ENST00000621325 IKZF4Q9H2S9 585 aa23.48■■□□□ 1.35
LIME1-210ENST00000621325 MRPS9P82933 396 aaKnown RBP23.48■■□□□ 1.35
LIME1-210ENST00000621325 EDRF1Q3B7T1 1238 aa23.48■■□□□ 1.35
LIME1-210ENST00000621325 MCF2L2Q86YR7 1114 aa23.48■■□□□ 1.35
LIME1-210ENST00000621325 SCYL3Q8IZE3 742 aa23.48■■□□□ 1.35
LIME1-210ENST00000621325 ATG4CQ96DT6 458 aa23.48■■□□□ 1.35
LIME1-210ENST00000621325 GINM1Q9NU53 330 aa23.48■■□□□ 1.35
LIME1-210ENST00000621325 GUCA1BQ9UMX6 200 aa23.48■■□□□ 1.35
LIME1-210ENST00000621325 TADA3O75528 432 aa23.47■■□□□ 1.35
LIME1-210ENST00000621325 GCNT3O95395 438 aa23.47■■□□□ 1.35
LIME1-210ENST00000621325 RPS6P62753 249 aaKnown RBP23.47■■□□□ 1.35
LIME1-210ENST00000621325 APBA1Q02410 837 aa23.47■■□□□ 1.35
LIME1-210ENST00000621325 EPHA7Q15375 998 aa23.47■■□□□ 1.35
LIME1-210ENST00000621325 LXNQ9BS40 222 aa23.47■■□□□ 1.35
LIME1-210ENST00000621325 CRACR2AQ9BSW2 395 aa23.47■■□□□ 1.35
LIME1-210ENST00000621325 PLAGL2Q9UPG8 496 aa23.47■■□□□ 1.35
LIME1-210ENST00000621325 RCCD1A6NED2 376 aa23.47■■□□□ 1.35
LIME1-210ENST00000621325 EIF2AK2P19525 551 aaKnown RBP23.47■■□□□ 1.35
LIME1-210ENST00000621325 MARSP56192 900 aaKnown RBP23.47■■□□□ 1.35
LIME1-210ENST00000621325 CYP27A1Q02318 531 aa23.47■■□□□ 1.35
LIME1-210ENST00000621325 DCAF15Q66K64 600 aa23.47■■□□□ 1.35
LIME1-210ENST00000621325 RRAGAQ7L523 313 aa23.47■■□□□ 1.35
LIME1-210ENST00000621325 BAP1Q92560 729 aa23.47■■□□□ 1.35
LIME1-210ENST00000621325 TRAF3IP3Q9Y228 551 aa23.47■■□□□ 1.35
LIME1-210ENST00000621325 UTP18Q9Y5J1 556 aaKnown RBP eCLIP23.47■■□□□ 1.35
LIME1-210ENST00000621325 LRRC53A6NM62 1247 aa23.46■■□□□ 1.35
LIME1-210ENST00000621325 CETN3O15182 167 aa23.46■■□□□ 1.35
LIME1-210ENST00000621325 GNA14O95837 355 aa23.46■■□□□ 1.35
LIME1-210ENST00000621325 PTPRAP18433 802 aa23.46■■□□□ 1.35
LIME1-210ENST00000621325 NMT1P30419 496 aaKnown RBP23.46■■□□□ 1.35
LIME1-210ENST00000621325 BACE1P56817 501 aa23.46■■□□□ 1.35
LIME1-210ENST00000621325 GHRHRQ02643 423 aa23.46■■□□□ 1.35
LIME1-210ENST00000621325 ITGB3BPQ13352 177 aaPredicted RBP23.46■■□□□ 1.35
LIME1-210ENST00000621325 PPP4R3CPQ6ZMV5 832 aa23.46■■□□□ 1.35
LIME1-210ENST00000621325 RIT2Q99578 217 aa23.46■■□□□ 1.35
LIME1-210ENST00000621325 ARHGAP20Q9P2F6 1191 aa23.46■■□□□ 1.35
LIME1-210ENST00000621325 ZNF112Q9UJU3 913 aa23.46■■□□□ 1.35
LIME1-210ENST00000621325 RIPK3Q9Y572 518 aa23.46■■□□□ 1.35
LIME1-210ENST00000621325 DHX15O43143 795 aaKnown RBP23.45■■□□□ 1.35
LIME1-210ENST00000621325 PPP2R3AQ06190 1150 aa23.45■■□□□ 1.35
LIME1-210ENST00000621325 TKFCQ3LXA3 575 aa23.45■■□□□ 1.35
LIME1-210ENST00000621325 FBXO38Q6PIJ6 1188 aa23.45■■□□□ 1.35
LIME1-210ENST00000621325 KRT26Q7Z3Y9 468 aa23.45■■□□□ 1.35
LIME1-210ENST00000621325 KCTD17Q8N5Z5 321 aa23.45■■□□□ 1.35
LIME1-210ENST00000621325 MYCT1Q8N699 235 aa23.45■■□□□ 1.35
LIME1-210ENST00000621325 ZBTB9Q96C00 473 aa23.45■■□□□ 1.35
LIME1-210ENST00000621325 ASTN1O14525 1302 aa23.45■■□□□ 1.34
LIME1-210ENST00000621325 VWA5AO00534 786 aa23.45■■□□□ 1.34
LIME1-210ENST00000621325 ZNF263O14978 683 aa23.45■■□□□ 1.34
LIME1-210ENST00000621325 FAM13AO94988 1023 aa23.45■■□□□ 1.34
LIME1-210ENST00000621325 TFRCP02786 760 aaKnown RBP23.45■■□□□ 1.34
LIME1-210ENST00000621325 HNRNPH3P31942 346 aaKnown RBP23.45■■□□□ 1.34
LIME1-210ENST00000621325 TRERF1Q96PN7 1200 aa23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms