RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 CREBZFQ9NS37 354 aa15.92■□□□□ 0.14
USP39-220ENST00000613444 SLC9A2Q9UBY0 812 aa15.92■□□□□ 0.14
USP39-220ENST00000613444 GDAQ9Y2T3 454 aa15.92■□□□□ 0.14
USP39-220ENST00000613444 SAMM50Q9Y512 469 aa15.92■□□□□ 0.14
USP39-220ENST00000613444 ARID2Q68CP9 1835 aa15.91■□□□□ 0.14
USP39-220ENST00000613444 SLC15A5A6NIM6 579 aa15.91■□□□□ 0.14
USP39-220ENST00000613444 SSBP05455 408 aaKnown RBP eCLIP15.91■□□□□ 0.14
USP39-220ENST00000613444 QARSP47897 775 aaKnown RBP15.91■□□□□ 0.14
USP39-220ENST00000613444 GRM1Q13255 1194 aa15.91■□□□□ 0.14
USP39-220ENST00000613444 MORN1Q5T089 497 aa15.91■□□□□ 0.14
USP39-220ENST00000613444 MAMDC4Q6UXC1 1216 aa15.91■□□□□ 0.14
USP39-220ENST00000613444 FBXO16Q8IX29 292 aaPredicted RBP15.91■□□□□ 0.14
USP39-220ENST00000613444 HSD3B7Q9H2F3 369 aa15.91■□□□□ 0.14
USP39-220ENST00000613444 ZSWIM4Q9H7M6 989 aa15.91■□□□□ 0.14
USP39-220ENST00000613444 DIS3Q9Y2L1 958 aaKnown RBP15.91■□□□□ 0.14
USP39-220ENST00000613444 PCDHA10Q9Y5I2 948 aa15.91■□□□□ 0.14
USP39-220ENST00000613444 MYH11P35749 1972 aa15.91■□□□□ 0.14
USP39-220ENST00000613444 NPHP3-ACAD11A0A0J9YXS1 232 aa15.9■□□□□ 0.14
USP39-220ENST00000613444 IKBKBO14920 756 aa15.9■□□□□ 0.14
USP39-220ENST00000613444 CA12O43570 354 aa15.9■□□□□ 0.14
USP39-220ENST00000613444 ATG7O95352 703 aa15.9■□□□□ 0.14
USP39-220ENST00000613444 APLP1P51693 650 aa15.9■□□□□ 0.14
USP39-220ENST00000613444 ACTR2P61160 394 aa15.9■□□□□ 0.14
USP39-220ENST00000613444 NOGQ13253 232 aa15.9■□□□□ 0.14
USP39-220ENST00000613444 DEFB115Q30KQ5 88 aa15.9■□□□□ 0.14
USP39-220ENST00000613444 CT47A1Q5JQC4 288 aaPredicted RBP15.9■□□□□ 0.14
USP39-220ENST00000613444 CCDC62Q6P9F0 684 aa15.9■□□□□ 0.14
USP39-220ENST00000613444 ABHD15Q6UXT9 468 aa15.9■□□□□ 0.14
USP39-220ENST00000613444 PAXIP1Q6ZW49 1069 aaPredicted RBP15.9■□□□□ 0.14
USP39-220ENST00000613444 CYFIP1Q7L576 1253 aa15.9■□□□□ 0.14
USP39-220ENST00000613444 KATNBL1Q9H079 304 aa15.9■□□□□ 0.14
USP39-220ENST00000613444 DDX41Q9UJV9 622 aaKnown RBP15.9■□□□□ 0.14
USP39-220ENST00000613444 ZSWIM8A7E2V4 1837 aa15.9■□□□□ 0.14
USP39-220ENST00000613444 FRMD3A2A2Y4 597 aa15.9■□□□□ 0.14
USP39-220ENST00000613444 AOC2O75106 756 aa15.9■□□□□ 0.14
USP39-220ENST00000613444 FARP2O94887 1054 aaPredicted RBP15.9■□□□□ 0.14
USP39-220ENST00000613444 ERCC5P28715 1186 aaPredicted RBP15.9■□□□□ 0.14
USP39-220ENST00000613444 STK4Q13043 487 aa15.9■□□□□ 0.14
USP39-220ENST00000613444 C4orf19Q8IY42 314 aa15.9■□□□□ 0.14
USP39-220ENST00000613444 NPLOC4Q8TAT6 608 aa15.9■□□□□ 0.14
USP39-220ENST00000613444 MAML3Q96JK9 1138 aa15.9■□□□□ 0.14
USP39-220ENST00000613444 RUSC1Q9BVN2 902 aa15.9■□□□□ 0.14
USP39-220ENST00000613444 DACH1Q9UI36 760 aa15.9■□□□□ 0.14
USP39-220ENST00000613444 SYNGAP1Q96PV0 1343 aa15.9■□□□□ 0.14
USP39-220ENST00000613444 SORBS3O60504 671 aa15.89■□□□□ 0.13
USP39-220ENST00000613444 PRCPP42785 496 aa15.89■□□□□ 0.13
USP39-220ENST00000613444 PSMC5P62195 406 aa15.89■□□□□ 0.13
USP39-220ENST00000613444 GIT2Q14161 759 aa15.89■□□□□ 0.13
USP39-220ENST00000613444 LY6KQ17RY6 165 aa15.89■□□□□ 0.13
USP39-220ENST00000613444 RINT1Q6NUQ1 792 aa15.89■□□□□ 0.13
USP39-220ENST00000613444 C1orf186Q6ZWK4 172 aa15.89■□□□□ 0.13
USP39-220ENST00000613444 KIAA0895Q8NCT3 520 aa15.89■□□□□ 0.13
USP39-220ENST00000613444 USP6NLQ92738 828 aa15.89■□□□□ 0.13
USP39-220ENST00000613444 HPS3Q969F9 1004 aa15.89■□□□□ 0.13
USP39-220ENST00000613444 CAPNS2Q96L46 248 aa15.89■□□□□ 0.13
USP39-220ENST00000613444 EXOC1Q9NV70 894 aa15.89■□□□□ 0.13
USP39-220ENST00000613444 STBD1O95210 358 aa15.89■□□□□ 0.13
USP39-220ENST00000613444 SNAI1O95863 264 aaPredicted RBP15.89■□□□□ 0.13
USP39-220ENST00000613444 NEDD9Q14511 834 aa15.89■□□□□ 0.13
USP39-220ENST00000613444 TAPT1Q6NXT6 567 aa15.89■□□□□ 0.13
USP39-220ENST00000613444 KCNV1Q6PIU1 500 aa15.89■□□□□ 0.13
USP39-220ENST00000613444 DPP9Q86TI2 863 aa15.89■□□□□ 0.13
USP39-220ENST00000613444 CCDC60Q8IWA6 550 aaPredicted RBP15.89■□□□□ 0.13
USP39-220ENST00000613444 ADSSL1Q8N142 457 aa15.89■□□□□ 0.13
USP39-220ENST00000613444 PDGFCQ9NRA1 345 aa15.89■□□□□ 0.13
USP39-220ENST00000613444 TCEAL9Q9UHQ7 104 aa15.89■□□□□ 0.13
USP39-220ENST00000613444 BECN2A8MW95 431 aa15.88■□□□□ 0.13
USP39-220ENST00000613444 ZNF862O60290 1169 aa15.88■□□□□ 0.13
USP39-220ENST00000613444 CTGFP29279 349 aa15.88■□□□□ 0.13
USP39-220ENST00000613444 MYL5Q02045 173 aa15.88■□□□□ 0.13
USP39-220ENST00000613444 CACNB1Q02641 598 aaPredicted RBP15.88■□□□□ 0.13
USP39-220ENST00000613444 COASYQ13057 564 aa15.88■□□□□ 0.13
USP39-220ENST00000613444 COBLL1Q53SF7 1204 aa15.88■□□□□ 0.13
USP39-220ENST00000613444 TMEM63BQ5T3F8 832 aa15.88■□□□□ 0.13
USP39-220ENST00000613444 ENOX1Q8TC92 643 aaKnown RBP15.88■□□□□ 0.13
USP39-220ENST00000613444 REEP2Q9BRK0 252 aa15.88■□□□□ 0.13
USP39-220ENST00000613444 BMP2KQ9NSY1 1161 aaPredicted RBP15.88■□□□□ 0.13
USP39-220ENST00000613444 DBR1Q9UK59 544 aaKnown RBP15.88■□□□□ 0.13
USP39-220ENST00000613444 PCDHA2Q9Y5H9 948 aa15.88■□□□□ 0.13
USP39-220ENST00000613444 IGKV6D-21A0A0A0MT36 114 aa15.87■□□□□ 0.13
USP39-220ENST00000613444 RBM47A0AV96 593 aaKnown RBP15.87■□□□□ 0.13
USP39-220ENST00000613444 GGPS1O95749 300 aa15.87■□□□□ 0.13
USP39-220ENST00000613444 PSAPP07602 524 aa15.87■□□□□ 0.13
USP39-220ENST00000613444 HOXC6P09630 235 aa15.87■□□□□ 0.13
USP39-220ENST00000613444 SUPT20HL2P0C7V6 817 aa15.87■□□□□ 0.13
USP39-220ENST00000613444 IDEP14735 1019 aa15.87■□□□□ 0.13
USP39-220ENST00000613444 SP4Q02446 784 aa15.87■□□□□ 0.13
USP39-220ENST00000613444 MAP2K5Q13163 448 aa15.87■□□□□ 0.13
USP39-220ENST00000613444 METTL7BQ6UX53 244 aa15.87■□□□□ 0.13
USP39-220ENST00000613444 TRMT44Q8IYL2 757 aaKnown RBP15.87■□□□□ 0.13
USP39-220ENST00000613444 PANK4Q9NVE7 773 aa15.87■□□□□ 0.13
USP39-220ENST00000613444 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.87■□□□□ 0.13
USP39-220ENST00000613444 GABBR1Q9UBS5 961 aa15.87■□□□□ 0.13
USP39-220ENST00000613444 MAPK8IP1Q9UQF2 711 aa15.87■□□□□ 0.13
USP39-220ENST00000613444 IGSF9BQ9UPX0 1349 aa15.87■□□□□ 0.13
USP39-220ENST00000613444 GSTTP1A0A1W2PQM5 241 aa15.87■□□□□ 0.13
USP39-220ENST00000613444 SMTNL1A8MU46 457 aa15.87■□□□□ 0.13
USP39-220ENST00000613444 GOLGA6L19H0YKK7 550 aa15.87■□□□□ 0.13
USP39-220ENST00000613444 YWHABP31946 246 aaKnown RBP15.87■□□□□ 0.13
USP39-220ENST00000613444 RARRES1P49788 294 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms