RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 UIMC1Q96RL1 719 aa13.12□□□□□ -0.31
LINC00539-204ENST00000608957 ZNF576Q9H609 170 aa13.12□□□□□ -0.31
LINC00539-204ENST00000608957 AGO4Q9HCK5 861 aaKnown RBP13.12□□□□□ -0.31
LINC00539-204ENST00000608957 SLC4A7Q9Y6M7 1214 aa13.12□□□□□ -0.31
LINC00539-204ENST00000608957 NFASCO94856 1347 aa13.12□□□□□ -0.31
LINC00539-204ENST00000608957 COL4A4P53420 1690 aaPredicted RBP13.12□□□□□ -0.31
LINC00539-204ENST00000608957 CHD9Q3L8U1 2897 aa13.11□□□□□ -0.31
LINC00539-204ENST00000608957 MAFGO15525 162 aa13.11□□□□□ -0.31
LINC00539-204ENST00000608957 STX6O43752 255 aa13.11□□□□□ -0.31
LINC00539-204ENST00000608957 ARHGEF15O94989 841 aa13.11□□□□□ -0.31
LINC00539-204ENST00000608957 CYP3A4P08684 503 aa13.11□□□□□ -0.31
LINC00539-204ENST00000608957 PDIA4P13667 645 aaKnown RBP13.11□□□□□ -0.31
LINC00539-204ENST00000608957 SYT1P21579 422 aa13.11□□□□□ -0.31
LINC00539-204ENST00000608957 MARK3P27448 753 aa13.11□□□□□ -0.31
LINC00539-204ENST00000608957 NPY5RQ15761 445 aa13.11□□□□□ -0.31
LINC00539-204ENST00000608957 FTOQ9C0B1 505 aaKnown RBP eCLIP13.11□□□□□ -0.31
LINC00539-204ENST00000608957 GLT8D2Q9H1C3 349 aa13.11□□□□□ -0.31
LINC00539-204ENST00000608957 MTIF3Q9H2K0 278 aaKnown RBP13.11□□□□□ -0.31
LINC00539-204ENST00000608957 SLC9A2Q9UBY0 812 aa13.11□□□□□ -0.31
LINC00539-204ENST00000608957 EMSYQ7Z589 1322 aa13.11□□□□□ -0.31
LINC00539-204ENST00000608957 STK36Q9NRP7 1315 aa13.11□□□□□ -0.31
LINC00539-204ENST00000608957 EYSQ5T1H1 3165 aa13.1□□□□□ -0.31
LINC00539-204ENST00000608957 DHX15O43143 795 aaKnown RBP13.1□□□□□ -0.31
LINC00539-204ENST00000608957 CCNE2O96020 404 aa13.1□□□□□ -0.31
LINC00539-204ENST00000608957 ATP2A2P16615 1042 aaKnown RBP13.1□□□□□ -0.31
LINC00539-204ENST00000608957 ACTR2P61160 394 aa13.1□□□□□ -0.31
LINC00539-204ENST00000608957 DEFB103AP81534 67 aa13.1□□□□□ -0.31
LINC00539-204ENST00000608957 LARP1BQ659C4 914 aaKnown RBP13.1□□□□□ -0.31
LINC00539-204ENST00000608957 RUFY4Q6ZNE9 571 aa13.1□□□□□ -0.31
LINC00539-204ENST00000608957 NIPA1Q7RTP0 329 aa13.1□□□□□ -0.31
LINC00539-204ENST00000608957 TMCO2Q7Z6W1 182 aaPredicted RBP13.1□□□□□ -0.31
LINC00539-204ENST00000608957 PLA2G4DQ86XP0 818 aa13.1□□□□□ -0.31
LINC00539-204ENST00000608957 REXO1Q8N1G1 1221 aaKnown RBP13.1□□□□□ -0.31
LINC00539-204ENST00000608957 TNPO1Q92973 898 aaKnown RBP13.1□□□□□ -0.31
LINC00539-204ENST00000608957 ZBTB10Q96DT7 871 aa13.1□□□□□ -0.31
LINC00539-204ENST00000608957 C6orf50Q9HD87 102 aa13.1□□□□□ -0.31
LINC00539-204ENST00000608957 JPH1Q9HDC5 661 aaPredicted RBP13.1□□□□□ -0.31
LINC00539-204ENST00000608957 ZNF215Q9UL58 517 aaPredicted RBP13.1□□□□□ -0.31
LINC00539-204ENST00000608957 ZDHHC9Q9Y397 364 aa13.1□□□□□ -0.31
LINC00539-204ENST00000608957 CHD7Q9P2D1 2997 aa13.1□□□□□ -0.31
LINC00539-204ENST00000608957 NLRC5Q86WI3 1866 aa13.1□□□□□ -0.31
LINC00539-204ENST00000608957 M0R2N6 131 aa13.09□□□□□ -0.31
LINC00539-204ENST00000608957 DDX39AO00148 427 aaKnown RBP13.09□□□□□ -0.31
LINC00539-204ENST00000608957 ATG7O95352 703 aa13.09□□□□□ -0.31
LINC00539-204ENST00000608957 ACTN1P12814 892 aa13.09□□□□□ -0.31
LINC00539-204ENST00000608957 THPOP40225 353 aa13.09□□□□□ -0.31
LINC00539-204ENST00000608957 WDR5P61964 334 aaKnown RBP13.09□□□□□ -0.31
LINC00539-204ENST00000608957 AKAP17AQ02040 695 aaKnown RBP13.09□□□□□ -0.31
LINC00539-204ENST00000608957 SSRP1Q08945 709 aaKnown RBP13.09□□□□□ -0.31
LINC00539-204ENST00000608957 MKRN4PQ13434 485 aaPredicted RBP13.09□□□□□ -0.31
LINC00539-204ENST00000608957 RAB30Q15771 203 aa13.09□□□□□ -0.31
LINC00539-204ENST00000608957 MARCH8Q5T0T0 291 aa13.09□□□□□ -0.31
LINC00539-204ENST00000608957 CNKSR3Q6P9H4 555 aa13.09□□□□□ -0.31
LINC00539-204ENST00000608957 CCDC12Q8WUD4 166 aaPredicted RBP13.09□□□□□ -0.31
LINC00539-204ENST00000608957 LENG9Q96B70 501 aa13.09□□□□□ -0.31
LINC00539-204ENST00000608957 SH3GLB2Q9NR46 395 aa13.09□□□□□ -0.31
LINC00539-204ENST00000608957 ORC3Q9UBD5 711 aaPredicted RBP13.09□□□□□ -0.31
LINC00539-204ENST00000608957 ATG2AQ2TAZ0 1938 aa13.08□□□□□ -0.32
LINC00539-204ENST00000608957 IGKV6D-21A0A0A0MT36 114 aa13.08□□□□□ -0.32
LINC00539-204ENST00000608957 VPS37CA5D8V6 355 aaPredicted RBP13.08□□□□□ -0.32
LINC00539-204ENST00000608957 BAIAP3O94812 1187 aa13.08□□□□□ -0.32
LINC00539-204ENST00000608957 CTSHP09668 335 aa13.08□□□□□ -0.32
LINC00539-204ENST00000608957 ZSCAN22P10073 491 aaPredicted RBP13.08□□□□□ -0.32
LINC00539-204ENST00000608957 FDPSP14324 419 aaKnown RBP13.08□□□□□ -0.32
LINC00539-204ENST00000608957 GNA11P29992 359 aa13.08□□□□□ -0.32
LINC00539-204ENST00000608957 CIITAP33076 1130 aa13.08□□□□□ -0.32
LINC00539-204ENST00000608957 ZNF76P36508 570 aa13.08□□□□□ -0.32
LINC00539-204ENST00000608957 PLCB4Q15147 1175 aa13.08□□□□□ -0.32
LINC00539-204ENST00000608957 GRIK4Q16099 956 aa13.08□□□□□ -0.32
LINC00539-204ENST00000608957 SPRED2Q7Z698 418 aa13.08□□□□□ -0.32
LINC00539-204ENST00000608957 CCDC148Q8NFR7 591 aa13.08□□□□□ -0.32
LINC00539-204ENST00000608957 SLC9A7Q96T83 725 aa13.08□□□□□ -0.32
LINC00539-204ENST00000608957 SDF4Q9BRK5 362 aa13.08□□□□□ -0.32
LINC00539-204ENST00000608957 SMARCAD1Q9H4L7 1026 aa13.08□□□□□ -0.32
LINC00539-204ENST00000608957 PRDM12Q9H4Q4 367 aa13.08□□□□□ -0.32
LINC00539-204ENST00000608957 ERAP1Q9NZ08 941 aa13.08□□□□□ -0.32
LINC00539-204ENST00000608957 MSRAQ9UJ68 235 aa13.08□□□□□ -0.32
LINC00539-204ENST00000608957 MTMR6Q9Y217 621 aa13.08□□□□□ -0.32
LINC00539-204ENST00000608957 PCDHA11Q9Y5I1 949 aa13.08□□□□□ -0.32
LINC00539-204ENST00000608957 NRCAMQ92823 1304 aa13.08□□□□□ -0.32
LINC00539-204ENST00000608957 MBLAC1A4D2B0 266 aaPredicted RBP13.07□□□□□ -0.32
LINC00539-204ENST00000608957 RSPH10B2B2RC85 870 aa13.07□□□□□ -0.32
LINC00539-204ENST00000608957 DEXIO95424 95 aa13.07□□□□□ -0.32
LINC00539-204ENST00000608957 PARNO95453 639 aaKnown RBP13.07□□□□□ -0.32
LINC00539-204ENST00000608957 RSPH10BP0C881 870 aa13.07□□□□□ -0.32
LINC00539-204ENST00000608957 FOSL2P15408 326 aa13.07□□□□□ -0.32
LINC00539-204ENST00000608957 NLRP5P59047 1200 aa13.07□□□□□ -0.32
LINC00539-204ENST00000608957 MGAT3Q09327 533 aa13.07□□□□□ -0.32
LINC00539-204ENST00000608957 PPFIA1Q13136 1202 aa13.07□□□□□ -0.32
LINC00539-204ENST00000608957 ADGRE1Q14246 886 aa13.07□□□□□ -0.32
LINC00539-204ENST00000608957 FAM26DQ5JW98 314 aa13.07□□□□□ -0.32
LINC00539-204ENST00000608957 FOXD4L5Q5VV16 416 aaPredicted RBP13.07□□□□□ -0.32
LINC00539-204ENST00000608957 ABHD15Q6UXT9 468 aa13.07□□□□□ -0.32
LINC00539-204ENST00000608957 HERC6Q8IVU3 1022 aa13.07□□□□□ -0.32
LINC00539-204ENST00000608957 CCDC60Q8IWA6 550 aaPredicted RBP13.07□□□□□ -0.32
LINC00539-204ENST00000608957 TRIM22Q8IYM9 498 aa13.07□□□□□ -0.32
LINC00539-204ENST00000608957 DBF4BQ8NFT6 615 aa13.07□□□□□ -0.32
LINC00539-204ENST00000608957 PHOSPHO2Q8TCD6 241 aa13.07□□□□□ -0.32
LINC00539-204ENST00000608957 TRAPPC12Q8WVT3 735 aa13.07□□□□□ -0.32
LINC00539-204ENST00000608957 FOXD4L4Q8WXT5 416 aaPredicted RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms