RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 PTCRAQ6ISU1 281 aaPredicted RBP20.4■□□□□ 0.86
SHKBP1-227ENST00000602011 TMTC3Q6ZXV5 915 aa20.4■□□□□ 0.86
SHKBP1-227ENST00000602011 ZNF713Q8N859 430 aaPredicted RBP20.4■□□□□ 0.86
SHKBP1-227ENST00000602011 NEK9Q8TD19 979 aa20.4■□□□□ 0.86
SHKBP1-227ENST00000602011 PABPC5Q96DU9 382 aaKnown RBP20.4■□□□□ 0.86
SHKBP1-227ENST00000602011 ESYT1Q9BSJ8 1104 aa20.4■□□□□ 0.86
SHKBP1-227ENST00000602011 C11orf84Q9BUA3 381 aaPredicted RBP20.4■□□□□ 0.86
SHKBP1-227ENST00000602011 NSUN3Q9H649 340 aaKnown RBP20.4■□□□□ 0.86
SHKBP1-227ENST00000602011 MYO7AQ13402 2215 aa20.39■□□□□ 0.86
SHKBP1-227ENST00000602011 ENPP3O14638 875 aa20.39■□□□□ 0.85
SHKBP1-227ENST00000602011 BMPR1AP36894 532 aa20.39■□□□□ 0.85
SHKBP1-227ENST00000602011 SLC26A2P50443 739 aa20.39■□□□□ 0.85
SHKBP1-227ENST00000602011 MGAT3Q09327 533 aa20.39■□□□□ 0.85
SHKBP1-227ENST00000602011 COL19A1Q14993 1142 aa20.39■□□□□ 0.85
SHKBP1-227ENST00000602011 PPP1R18Q6NYC8 613 aa20.39■□□□□ 0.85
SHKBP1-227ENST00000602011 PLPPR4Q7Z2D5 763 aa20.39■□□□□ 0.85
SHKBP1-227ENST00000602011 NME8Q8N427 588 aa20.39■□□□□ 0.85
SHKBP1-227ENST00000602011 PLVAPQ9BX97 442 aa20.39■□□□□ 0.85
SHKBP1-227ENST00000602011 JPH1Q9HDC5 661 aaPredicted RBP20.39■□□□□ 0.85
SHKBP1-227ENST00000602011 RNF216Q9NWF9 866 aaPredicted RBP20.39■□□□□ 0.85
SHKBP1-227ENST00000602011 NFASCO94856 1347 aa20.38■□□□□ 0.85
SHKBP1-227ENST00000602011 GRXCR2A6NFK2 248 aa20.38■□□□□ 0.85
SHKBP1-227ENST00000602011 M0QZ92 97 aa20.38■□□□□ 0.85
SHKBP1-227ENST00000602011 ALADP13716 330 aa20.38■□□□□ 0.85
SHKBP1-227ENST00000602011 NAALADL2Q58DX5 795 aa20.38■□□□□ 0.85
SHKBP1-227ENST00000602011 TSHZ1Q6ZSZ6 1077 aa20.38■□□□□ 0.85
SHKBP1-227ENST00000602011 EP400NLQ6ZTU2 488 aa20.38■□□□□ 0.85
SHKBP1-227ENST00000602011 CLP1Q92989 425 aaKnown RBP20.38■□□□□ 0.85
SHKBP1-227ENST00000602011 MXRA8Q9BRK3 442 aa20.38■□□□□ 0.85
SHKBP1-227ENST00000602011 SDF4Q9BRK5 362 aa20.38■□□□□ 0.85
SHKBP1-227ENST00000602011 SLC9A2Q9UBY0 812 aa20.38■□□□□ 0.85
SHKBP1-227ENST00000602011 PRKAG3Q9UGI9 489 aa20.38■□□□□ 0.85
SHKBP1-227ENST00000602011 GHRP10912 638 aa20.37■□□□□ 0.85
SHKBP1-227ENST00000602011 LPIN1Q14693 890 aa20.37■□□□□ 0.85
SHKBP1-227ENST00000602011 TCEAL5Q5H9L2 206 aa20.37■□□□□ 0.85
SHKBP1-227ENST00000602011 FBXO47Q5MNV8 452 aa20.37■□□□□ 0.85
SHKBP1-227ENST00000602011 HEATR3Q7Z4Q2 680 aa20.37■□□□□ 0.85
SHKBP1-227ENST00000602011 DNAJB3Q8WWF6 145 aa20.37■□□□□ 0.85
SHKBP1-227ENST00000602011 UIMC1Q96RL1 719 aa20.37■□□□□ 0.85
SHKBP1-227ENST00000602011 RIC8AQ9NPQ8 531 aa20.37■□□□□ 0.85
SHKBP1-227ENST00000602011 KCNH7Q9NS40 1196 aa20.37■□□□□ 0.85
SHKBP1-227ENST00000602011 KAT6AQ92794 2004 aa20.36■□□□□ 0.85
SHKBP1-227ENST00000602011 INSRRP14616 1297 aa20.36■□□□□ 0.85
SHKBP1-227ENST00000602011 RCAN1P53805 252 aa20.36■□□□□ 0.85
SHKBP1-227ENST00000602011 MRPS6P82932 125 aaKnown RBP20.36■□□□□ 0.85
SHKBP1-227ENST00000602011 CEP55Q53EZ4 464 aa20.36■□□□□ 0.85
SHKBP1-227ENST00000602011 MARCH8Q5T0T0 291 aa20.36■□□□□ 0.85
SHKBP1-227ENST00000602011 MCTP2Q6DN12 878 aa20.36■□□□□ 0.85
SHKBP1-227ENST00000602011 RUFY4Q6ZNE9 571 aa20.36■□□□□ 0.85
SHKBP1-227ENST00000602011 CMTR1Q8N1G2 835 aaKnown RBP20.36■□□□□ 0.85
SHKBP1-227ENST00000602011 CCDC82Q8N4S0 544 aa20.36■□□□□ 0.85
SHKBP1-227ENST00000602011 NEK1Q96PY6 1258 aa20.36■□□□□ 0.85
SHKBP1-227ENST00000602011 ANO2Q9NQ90 1003 aa20.36■□□□□ 0.85
SHKBP1-227ENST00000602011 PCDHA2Q9Y5H9 948 aa20.36■□□□□ 0.85
SHKBP1-227ENST00000602011 DOCK5Q9H7D0 1870 aa20.36■□□□□ 0.85
SHKBP1-227ENST00000602011 ADGRA3Q8IWK6 1321 aa20.35■□□□□ 0.85
SHKBP1-227ENST00000602011 STAG3L1P0CL83 205 aa20.35■□□□□ 0.85
SHKBP1-227ENST00000602011 MARK3P27448 753 aa20.35■□□□□ 0.85
SHKBP1-227ENST00000602011 CTNNB1P35222 781 aa20.35■□□□□ 0.85
SHKBP1-227ENST00000602011 STAT5BP51692 787 aa20.35■□□□□ 0.85
SHKBP1-227ENST00000602011 AP3B2Q13367 1082 aa20.35■□□□□ 0.85
SHKBP1-227ENST00000602011 KRT32Q14532 448 aa20.35■□□□□ 0.85
SHKBP1-227ENST00000602011 TSGA10IPQ3SY00 556 aa20.35■□□□□ 0.85
SHKBP1-227ENST00000602011 ODR4Q5SWX8 454 aa20.35■□□□□ 0.85
SHKBP1-227ENST00000602011 DHX32Q7L7V1 743 aaKnown RBP20.35■□□□□ 0.85
SHKBP1-227ENST00000602011 NIPA1Q7RTP0 329 aa20.35■□□□□ 0.85
SHKBP1-227ENST00000602011 P2RX5Q93086 422 aa20.35■□□□□ 0.85
SHKBP1-227ENST00000602011 PPP2R3CQ969Q6 453 aa20.35■□□□□ 0.85
SHKBP1-227ENST00000602011 ZNF689Q96CS4 500 aaPredicted RBP20.35■□□□□ 0.85
SHKBP1-227ENST00000602011 CDY2AQ9Y6F7 541 aa20.35■□□□□ 0.85
SHKBP1-227ENST00000602011 CSPG5O95196 566 aa20.34■□□□□ 0.85
SHKBP1-227ENST00000602011 HMGB1P09429 215 aaKnown RBP20.34■□□□□ 0.85
SHKBP1-227ENST00000602011 RXRAP19793 462 aa20.34■□□□□ 0.85
SHKBP1-227ENST00000602011 NAPAP54920 295 aa20.34■□□□□ 0.85
SHKBP1-227ENST00000602011 BTG3Q14201 252 aaPredicted RBP20.34■□□□□ 0.85
SHKBP1-227ENST00000602011 UBE2SQ16763 222 aa20.34■□□□□ 0.85
SHKBP1-227ENST00000602011 APOA5Q6Q788 366 aa20.34■□□□□ 0.85
SHKBP1-227ENST00000602011 ALYREFQ86V81 257 aaKnown RBP20.34■□□□□ 0.85
SHKBP1-227ENST00000602011 MICU3Q86XE3 530 aa20.34■□□□□ 0.85
SHKBP1-227ENST00000602011 RC3H2Q9HBD1 1191 aaKnown RBP20.34■□□□□ 0.85
SHKBP1-227ENST00000602011 KDM3AQ9Y4C1 1321 aa20.33■□□□□ 0.85
SHKBP1-227ENST00000602011 NLRC5Q86WI3 1866 aa20.33■□□□□ 0.85
SHKBP1-227ENST00000602011 SMIM35A0A1B0GVV1 85 aa20.33■□□□□ 0.85
SHKBP1-227ENST00000602011 MEIS1O00470 390 aa20.33■□□□□ 0.85
SHKBP1-227ENST00000602011 ZBTB43O43298 467 aa20.33■□□□□ 0.85
SHKBP1-227ENST00000602011 DGKIO75912 1065 aa20.33■□□□□ 0.85
SHKBP1-227ENST00000602011 ATG7O95352 703 aa20.33■□□□□ 0.85
SHKBP1-227ENST00000602011 ACTR2P61160 394 aa20.33■□□□□ 0.85
SHKBP1-227ENST00000602011 BMP2KLQ5H9B9 411 aa20.33■□□□□ 0.85
SHKBP1-227ENST00000602011 CMTR2Q8IYT2 770 aaKnown RBP20.33■□□□□ 0.85
SHKBP1-227ENST00000602011 UPF3BQ9BZI7 483 aaKnown RBP20.33■□□□□ 0.85
SHKBP1-227ENST00000602011 TRPC6Q9Y210 931 aa20.33■□□□□ 0.85
SHKBP1-227ENST00000602011 TRPV2Q9Y5S1 764 aa20.33■□□□□ 0.85
SHKBP1-227ENST00000602011 CCDC196A0A1B0GTZ2 297 aa20.32■□□□□ 0.84
SHKBP1-227ENST00000602011 PRR33A8MZF0 331 aa20.32■□□□□ 0.84
SHKBP1-227ENST00000602011 ADCY7P51828 1080 aa20.32■□□□□ 0.84
SHKBP1-227ENST00000602011 IGBP1P78318 339 aa20.32■□□□□ 0.84
SHKBP1-227ENST00000602011 EXOSC10Q01780 885 aaKnown RBP20.32■□□□□ 0.84
SHKBP1-227ENST00000602011 CLUL1Q15846 466 aa20.32■□□□□ 0.84
SHKBP1-227ENST00000602011 RTN1Q16799 776 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms