RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 TOX2Q96NM4 488 aa21.78■■□□□ 1.08
UPF1-209ENST00000600310 MAFBQ9Y5Q3 323 aaPredicted RBP21.78■■□□□ 1.08
UPF1-209ENST00000600310 MROH7Q68CQ1 1323 aa21.78■■□□□ 1.08
UPF1-209ENST00000600310 BRD1O95696 1058 aa21.77■■□□□ 1.08
UPF1-209ENST00000600310 PRPHP41219 470 aa21.77■■□□□ 1.08
UPF1-209ENST00000600310 TLE2Q04725 743 aa21.77■■□□□ 1.08
UPF1-209ENST00000600310 EPHA7Q15375 998 aa21.77■■□□□ 1.08
UPF1-209ENST00000600310 PDXDC2PQ6P474 469 aa21.77■■□□□ 1.08
UPF1-209ENST00000600310 FAM126BQ8IXS8 530 aa21.77■■□□□ 1.08
UPF1-209ENST00000600310 RNPEPQ9H4A4 650 aa21.77■■□□□ 1.08
UPF1-209ENST00000600310 HDAC6Q9UBN7 1215 aa21.77■■□□□ 1.08
UPF1-209ENST00000600310 GABBR1Q9UBS5 961 aa21.77■■□□□ 1.08
UPF1-209ENST00000600310 MARK3P27448 753 aa21.76■■□□□ 1.07
UPF1-209ENST00000600310 DDIT3P35638 169 aa21.76■■□□□ 1.07
UPF1-209ENST00000600310 SF3A1Q15459 793 aaKnown RBP21.76■■□□□ 1.07
UPF1-209ENST00000600310 FAM47CQ5HY64 1035 aa21.76■■□□□ 1.07
UPF1-209ENST00000600310 NCAPH2Q6IBW4 605 aa21.76■■□□□ 1.07
UPF1-209ENST00000600310 C7orf31Q8N865 590 aa21.76■■□□□ 1.07
UPF1-209ENST00000600310 PPP1R13LQ8WUF5 828 aa21.76■■□□□ 1.07
UPF1-209ENST00000600310 DAXXQ9UER7 740 aaPredicted RBP21.76■■□□□ 1.07
UPF1-209ENST00000600310 GTF2IRD1Q9UHL9 959 aa21.76■■□□□ 1.07
UPF1-209ENST00000600310 CEP131Q9UPN4 1083 aa21.76■■□□□ 1.07
UPF1-209ENST00000600310 ATP11BQ9Y2G3 1177 aa21.76■■□□□ 1.07
UPF1-209ENST00000600310 ZDHHC9Q9Y397 364 aa21.76■■□□□ 1.07
UPF1-209ENST00000600310 RBM19Q9Y4C8 960 aaKnown RBP21.76■■□□□ 1.07
UPF1-209ENST00000600310 IGSF9BQ9UPX0 1349 aa21.76■■□□□ 1.07
UPF1-209ENST00000600310 PQBP1O60828 265 aaKnown RBP21.75■■□□□ 1.07
UPF1-209ENST00000600310 SMIM10L2AP0DMW4 78 aa21.75■■□□□ 1.07
UPF1-209ENST00000600310 SMIM10L2BP0DMW5 78 aa21.75■■□□□ 1.07
UPF1-209ENST00000600310 TECP42680 631 aa21.75■■□□□ 1.07
UPF1-209ENST00000600310 FXR2P51116 673 aaKnown RBP eCLIP21.75■■□□□ 1.073e-8■■■■□ 23.4
UPF1-209ENST00000600310 PLCB4Q15147 1175 aa21.75■■□□□ 1.07
UPF1-209ENST00000600310 TMEM266Q2M3C6 531 aa21.75■■□□□ 1.07
UPF1-209ENST00000600310 ARL6IP4Q66PJ3 421 aaKnown RBP21.75■■□□□ 1.07
UPF1-209ENST00000600310 DPF3Q92784 378 aa21.75■■□□□ 1.07
UPF1-209ENST00000600310 PCDH10Q9P2E7 1040 aa21.75■■□□□ 1.07
UPF1-209ENST00000600310 CLIC4Q9Y696 253 aa21.75■■□□□ 1.07
UPF1-209ENST00000600310 DCDC2CA8MYV0 355 aa21.74■■□□□ 1.07
UPF1-209ENST00000600310 EVI5O60447 810 aa21.74■■□□□ 1.07
UPF1-209ENST00000600310 B4GALT4O60513 344 aa21.74■■□□□ 1.07
UPF1-209ENST00000600310 CD4P01730 458 aa21.74■■□□□ 1.07
UPF1-209ENST00000600310 ATP4AP20648 1035 aa21.74■■□□□ 1.07
UPF1-209ENST00000600310 HOXC8P31273 242 aa21.74■■□□□ 1.07
UPF1-209ENST00000600310 ATP8B4Q8TF62 1192 aa21.74■■□□□ 1.07
UPF1-209ENST00000600310 TNPO1Q92973 898 aaKnown RBP21.74■■□□□ 1.07
UPF1-209ENST00000600310 ATP6V0A1Q93050 837 aa21.74■■□□□ 1.07
UPF1-209ENST00000600310 ZNF396Q96N95 335 aaPredicted RBP21.74■■□□□ 1.07
UPF1-209ENST00000600310 USP28Q96RU2 1077 aa21.74■■□□□ 1.07
UPF1-209ENST00000600310 FTOQ9C0B1 505 aaKnown RBP eCLIP21.74■■□□□ 1.07
UPF1-209ENST00000600310 POTEB3A0JP26 581 aa21.73■■□□□ 1.07
UPF1-209ENST00000600310 POTEMA6NI47 508 aa21.73■■□□□ 1.07
UPF1-209ENST00000600310 TLR3O15455 904 aaKnown RBP21.73■■□□□ 1.07
UPF1-209ENST00000600310 ZNF862O60290 1169 aa21.73■■□□□ 1.07
UPF1-209ENST00000600310 P4HBP07237 508 aaKnown RBP21.73■■□□□ 1.07
UPF1-209ENST00000600310 PSMC5P62195 406 aa21.73■■□□□ 1.07
UPF1-209ENST00000600310 PTPAQ15257 358 aa21.73■■□□□ 1.07
UPF1-209ENST00000600310 IL17AQ16552 155 aa21.73■■□□□ 1.07
UPF1-209ENST00000600310 UGCGQ16739 394 aa21.73■■□□□ 1.07
UPF1-209ENST00000600310 GDF6Q6KF10 455 aaPredicted RBP21.73■■□□□ 1.07
UPF1-209ENST00000600310 POTEBQ6S5H4 581 aa21.73■■□□□ 1.07
UPF1-209ENST00000600310 DTHD1Q6ZMT9 781 aa21.73■■□□□ 1.07
UPF1-209ENST00000600310 NRCAMQ92823 1304 aa21.73■■□□□ 1.07
UPF1-209ENST00000600310 HBP1O60381 514 aa21.72■■□□□ 1.07
UPF1-209ENST00000600310 QARSP47897 775 aaKnown RBP21.72■■□□□ 1.07
UPF1-209ENST00000600310 NUCB2P80303 420 aa21.72■■□□□ 1.07
UPF1-209ENST00000600310 FAAP100Q0VG06 881 aa21.72■■□□□ 1.07
UPF1-209ENST00000600310 PPFIA1Q13136 1202 aa21.72■■□□□ 1.07
UPF1-209ENST00000600310 HIC1Q14526 733 aa21.72■■□□□ 1.07
UPF1-209ENST00000600310 PDIA5Q14554 519 aa21.72■■□□□ 1.07
UPF1-209ENST00000600310 CKAP2LQ8IYA6 745 aa21.72■■□□□ 1.07
UPF1-209ENST00000600310 IGSF22Q8N9C0 903 aa21.72■■□□□ 1.07
UPF1-209ENST00000600310 BANK1Q8NDB2 785 aa21.72■■□□□ 1.07
UPF1-209ENST00000600310 NEK9Q8TD19 979 aa21.72■■□□□ 1.07
UPF1-209ENST00000600310 BBXQ8WY36 941 aaPredicted RBP21.72■■□□□ 1.07
UPF1-209ENST00000600310 FAM167AQ96KS9 214 aa21.72■■□□□ 1.07
UPF1-209ENST00000600310 HSD17B14Q9BPX1 270 aa21.72■■□□□ 1.07
UPF1-209ENST00000600310 EIF2AK1Q9BQI3 630 aaKnown RBP21.72■■□□□ 1.07
UPF1-209ENST00000600310 RAB34Q9BZG1 259 aa21.72■■□□□ 1.07
UPF1-209ENST00000600310 TRPV6Q9H1D0 765 aa21.72■■□□□ 1.07
UPF1-209ENST00000600310 TRMT13Q9NUP7 481 aaKnown RBP21.72■■□□□ 1.07
UPF1-209ENST00000600310 SETD4Q9NVD3 440 aa21.72■■□□□ 1.07
UPF1-209ENST00000600310 RGL1Q9NZL6 768 aa21.72■■□□□ 1.07
UPF1-209ENST00000600310 TRPC6Q9Y210 931 aa21.72■■□□□ 1.07
UPF1-209ENST00000600310 MORC2Q9Y6X9 1032 aaPredicted RBP21.72■■□□□ 1.07
UPF1-209ENST00000600310 C17orf102A2RUQ5 167 aa21.71■■□□□ 1.07
UPF1-209ENST00000600310 DKC1O60832 514 aaKnown RBP eCLIP21.71■■□□□ 1.07
UPF1-209ENST00000600310 CLTBP09497 229 aa21.71■■□□□ 1.07
UPF1-209ENST00000600310 GNAT1P11488 350 aa21.71■■□□□ 1.07
UPF1-209ENST00000600310 INSRRP14616 1297 aa21.71■■□□□ 1.07
UPF1-209ENST00000600310 NASPP49321 788 aaPredicted RBP21.71■■□□□ 1.07
UPF1-209ENST00000600310 ADAM17P78536 824 aa21.71■■□□□ 1.07
UPF1-209ENST00000600310 PRKCEQ02156 737 aa21.71■■□□□ 1.07
UPF1-209ENST00000600310 PTGISQ16647 500 aa21.71■■□□□ 1.07
UPF1-209ENST00000600310 ATL3Q6DD88 541 aa21.71■■□□□ 1.07
UPF1-209ENST00000600310 C7orf61Q8IZ16 206 aa21.71■■□□□ 1.07
UPF1-209ENST00000600310 DYDC2Q96IM9 177 aa21.71■■□□□ 1.07
UPF1-209ENST00000600310 RRN3P2A6NIE6 340 aa21.7■■□□□ 1.06
UPF1-209ENST00000600310 SLITRK3O94933 977 aa21.7■■□□□ 1.06
UPF1-209ENST00000600310 STBD1O95210 358 aa21.7■■□□□ 1.06
UPF1-209ENST00000600310 OATP04181 439 aa21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms