RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 LOC730098B7Z3J9 87 aa7.05□□□□□ -1.28
VRK3-220ENST00000600259 E7EWF7 191 aa7.05□□□□□ -1.28
VRK3-220ENST00000600259 IFIT3O14879 490 aaKnown RBP7.05□□□□□ -1.28
VRK3-220ENST00000600259 GLP2RO95838 553 aa7.05□□□□□ -1.28
VRK3-220ENST00000600259 ITGB1P05556 798 aa7.05□□□□□ -1.28
VRK3-220ENST00000600259 GSPT1P15170 499 aaKnown RBP7.05□□□□□ -1.28
VRK3-220ENST00000600259 PDE4AP27815 886 aa7.05□□□□□ -1.28
VRK3-220ENST00000600259 SMARCA1P28370 1054 aa7.05□□□□□ -1.28
VRK3-220ENST00000600259 TCF7P36402 384 aaPredicted RBP7.05□□□□□ -1.28
VRK3-220ENST00000600259 SMAD4Q13485 552 aaKnown RBP7.05□□□□□ -1.28
VRK3-220ENST00000600259 AAMPQ13685 434 aa7.05□□□□□ -1.28
VRK3-220ENST00000600259 CLUL1Q15846 466 aa7.05□□□□□ -1.28
VRK3-220ENST00000600259 CSPP1Q1MSJ5 1256 aa7.05□□□□□ -1.28
VRK3-220ENST00000600259 NAALADL2Q58DX5 795 aa7.05□□□□□ -1.28
VRK3-220ENST00000600259 IER5LQ5T953 404 aa7.05□□□□□ -1.28
VRK3-220ENST00000600259 TAF2Q6P1X5 1199 aa7.05□□□□□ -1.28
VRK3-220ENST00000600259 EP400NLQ6ZTU2 488 aa7.05□□□□□ -1.28
VRK3-220ENST00000600259 ADGRD2Q7Z7M1 963 aa7.05□□□□□ -1.28
VRK3-220ENST00000600259 PRSS33Q8NF86 280 aa7.05□□□□□ -1.28
VRK3-220ENST00000600259 DNAJB3Q8WWF6 145 aa7.05□□□□□ -1.28
VRK3-220ENST00000600259 SEPT1Q8WYJ6 367 aa7.05□□□□□ -1.28
VRK3-220ENST00000600259 GPRASP2Q96D09 838 aa7.05□□□□□ -1.28
VRK3-220ENST00000600259 MAP3K14Q99558 947 aa7.05□□□□□ -1.28
VRK3-220ENST00000600259 SPZ1Q9BXG8 430 aa7.05□□□□□ -1.28
VRK3-220ENST00000600259 RWDD1Q9H446 243 aaPredicted RBP7.05□□□□□ -1.28
VRK3-220ENST00000600259 CDY2AQ9Y6F7 541 aa7.05□□□□□ -1.28
VRK3-220ENST00000600259 MRPL42Q9Y6G3 142 aaKnown RBP7.05□□□□□ -1.28
VRK3-220ENST00000600259 SQORQ9Y6N5 450 aa7.05□□□□□ -1.28
VRK3-220ENST00000600259 STXBP3O00186 592 aa7.04□□□□□ -1.28
VRK3-220ENST00000600259 INSRRP14616 1297 aa7.04□□□□□ -1.28
VRK3-220ENST00000600259 CHMLP26374 656 aa7.04□□□□□ -1.28
VRK3-220ENST00000600259 CD52P31358 61 aa7.04□□□□□ -1.28
VRK3-220ENST00000600259 MRPS6P82932 125 aaKnown RBP7.04□□□□□ -1.28
VRK3-220ENST00000600259 SP4Q02446 784 aa7.04□□□□□ -1.28
VRK3-220ENST00000600259 COASYQ13057 564 aa7.04□□□□□ -1.28
VRK3-220ENST00000600259 PPFIA1Q13136 1202 aa7.04□□□□□ -1.28
VRK3-220ENST00000600259 BTG3Q14201 252 aaPredicted RBP7.04□□□□□ -1.28
VRK3-220ENST00000600259 WTAPQ15007 396 aa7.04□□□□□ -1.28
VRK3-220ENST00000600259 GRIK4Q16099 956 aa7.04□□□□□ -1.28
VRK3-220ENST00000600259 TSHZ1Q6ZSZ6 1077 aa7.04□□□□□ -1.28
VRK3-220ENST00000600259 TRIM67Q6ZTA4 783 aa7.04□□□□□ -1.28
VRK3-220ENST00000600259 MB21D2Q8IYB1 491 aaPredicted RBP7.04□□□□□ -1.28
VRK3-220ENST00000600259 CMTR2Q8IYT2 770 aaKnown RBP7.04□□□□□ -1.28
VRK3-220ENST00000600259 SRBD1Q8N5C6 995 aaKnown RBP7.04□□□□□ -1.28
VRK3-220ENST00000600259 EFHBQ8N7U6 833 aa7.04□□□□□ -1.28
VRK3-220ENST00000600259 KLHL23Q8NBE8 558 aa7.04□□□□□ -1.28
VRK3-220ENST00000600259 SMRP1Q8NCR6 262 aa7.04□□□□□ -1.28
VRK3-220ENST00000600259 GIMAP8Q8ND71 665 aaPredicted RBP7.04□□□□□ -1.28
VRK3-220ENST00000600259 ATP8B4Q8TF62 1192 aa7.04□□□□□ -1.28
VRK3-220ENST00000600259 PIBF1Q8WXW3 757 aa7.04□□□□□ -1.28
VRK3-220ENST00000600259 MFSD14AQ96MC6 490 aa7.04□□□□□ -1.28
VRK3-220ENST00000600259 TMX1Q9H3N1 280 aa7.04□□□□□ -1.28
VRK3-220ENST00000600259 SMARCAD1Q9H4L7 1026 aa7.04□□□□□ -1.28
VRK3-220ENST00000600259 IGFLR1Q9H665 355 aa7.04□□□□□ -1.28
VRK3-220ENST00000600259 CD207Q9UJ71 328 aa7.04□□□□□ -1.28
VRK3-220ENST00000600259 TUBE1Q9UJT0 475 aa7.04□□□□□ -1.28
VRK3-220ENST00000600259 ZNF215Q9UL58 517 aaPredicted RBP7.04□□□□□ -1.28
VRK3-220ENST00000600259 PADI3Q9ULW8 664 aa7.04□□□□□ -1.28
VRK3-220ENST00000600259 RWDD3Q9Y3V2 267 aa7.04□□□□□ -1.28
VRK3-220ENST00000600259 LAMA4Q16363 1823 aa7.04□□□□□ -1.28
VRK3-220ENST00000600259 TMEM221A6NGB7 291 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 RRN3P2A6NIE6 340 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 M0R296 226 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 MAFGO15525 162 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 MGEA5O60502 916 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 ATG7O95352 703 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 PLEKHA8P1O95397 391 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 MARK3P27448 753 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 GATMP50440 423 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 ZXDAP98168 799 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 RBM10P98175 930 aaKnown RBP7.03□□□□□ -1.28
VRK3-220ENST00000600259 TCF15Q12870 199 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 TRDNQ13061 729 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 KCNC3Q14003 757 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 NLRX1Q86UT6 975 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 NPAS4Q8IUM7 802 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 VN1R2Q8NFZ6 395 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 EXOC6Q8TAG9 804 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 SMARCC2Q8TAQ2 1214 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 CYP2W1Q8TAV3 490 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 POF1BQ8WVV4 589 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 SUSD6Q92537 303 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 MAP4K1Q92918 833 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 POP1Q99575 1024 aaKnown RBP7.03□□□□□ -1.28
VRK3-220ENST00000600259 MYL10Q9BUA6 226 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 CELF4Q9BZC1 486 aaKnown RBP7.03□□□□□ -1.28
VRK3-220ENST00000600259 CDHR5Q9HBB8 845 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 LY9Q9HBG7 655 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 JADE2Q9NQC1 790 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 ERAP1Q9NZ08 941 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 PCDHGC5Q9Y5F6 944 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 PCDHA2Q9Y5H9 948 aa7.03□□□□□ -1.28
VRK3-220ENST00000600259 IGSF9BQ9UPX0 1349 aa7.02□□□□□ -1.28
VRK3-220ENST00000600259 KDM3AQ9Y4C1 1321 aa7.02□□□□□ -1.28
VRK3-220ENST00000600259 USP34Q70CQ2 3546 aa7.02□□□□□ -1.28
VRK3-220ENST00000600259 MYH6P13533 1939 aa7.02□□□□□ -1.29
VRK3-220ENST00000600259 ATG2AQ2TAZ0 1938 aa7.02□□□□□ -1.29
VRK3-220ENST00000600259 IGKV6D-21A0A0A0MT36 114 aa7.02□□□□□ -1.29
VRK3-220ENST00000600259 SGSM2O43147 1006 aa7.02□□□□□ -1.29
VRK3-220ENST00000600259 NRIP1P48552 1158 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms