RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 MICAL1Q8TDZ2 1067 aa16.05■□□□□ 0.16
SHKBP1-218ENST00000598907 NEK1Q96PY6 1258 aa16.05■□□□□ 0.16
SHKBP1-218ENST00000598907 PNMA2Q9UL42 364 aa16.05■□□□□ 0.16
SHKBP1-218ENST00000598907 SORCS3Q9UPU3 1222 aa16.05■□□□□ 0.16
SHKBP1-218ENST00000598907 CAND2O75155 1236 aa16.04■□□□□ 0.16
SHKBP1-218ENST00000598907 GGPS1O95749 300 aa16.04■□□□□ 0.16
SHKBP1-218ENST00000598907 PCP11498 1178 aaKnown RBP16.04■□□□□ 0.16
SHKBP1-218ENST00000598907 HOXD8P13378 290 aaPredicted RBP16.04■□□□□ 0.16
SHKBP1-218ENST00000598907 IBSPP21815 317 aaPredicted RBP16.04■□□□□ 0.16
SHKBP1-218ENST00000598907 KRT32Q14532 448 aa16.04■□□□□ 0.16
SHKBP1-218ENST00000598907 ADCK5Q3MIX3 580 aa16.04■□□□□ 0.16
SHKBP1-218ENST00000598907 FLCNQ8NFG4 579 aa16.04■□□□□ 0.16
SHKBP1-218ENST00000598907 ZNF689Q96CS4 500 aaPredicted RBP16.04■□□□□ 0.16
SHKBP1-218ENST00000598907 HINFPQ9BQA5 517 aa16.04■□□□□ 0.16
SHKBP1-218ENST00000598907 C16orf70Q9BSU1 422 aa16.04■□□□□ 0.16
SHKBP1-218ENST00000598907 TM6SF1Q9BZW5 370 aa16.04■□□□□ 0.16
SHKBP1-218ENST00000598907 CPVLQ9H3G5 476 aa16.04■□□□□ 0.16
SHKBP1-218ENST00000598907 RNPEPQ9H4A4 650 aa16.04■□□□□ 0.16
SHKBP1-218ENST00000598907 TOMM22Q9NS69 142 aa16.04■□□□□ 0.16
SHKBP1-218ENST00000598907 SETD4Q9NVD3 440 aa16.04■□□□□ 0.16
SHKBP1-218ENST00000598907 CDH22Q9UJ99 828 aa16.04■□□□□ 0.16
SHKBP1-218ENST00000598907 H3BRB1 525 aa16.03■□□□□ 0.16
SHKBP1-218ENST00000598907 ORC4O43929 436 aa16.03■□□□□ 0.16
SHKBP1-218ENST00000598907 PPFIA4O75335 1185 aa16.03■□□□□ 0.16
SHKBP1-218ENST00000598907 DGKIO75912 1065 aa16.03■□□□□ 0.16
SHKBP1-218ENST00000598907 MYSM1Q5VVJ2 828 aa16.03■□□□□ 0.16
SHKBP1-218ENST00000598907 UBALD2Q8IYN6 164 aa16.03■□□□□ 0.16
SHKBP1-218ENST00000598907 IWS1Q96ST2 819 aa16.03■□□□□ 0.16
SHKBP1-218ENST00000598907 TMEM47Q9BQJ4 181 aa16.03■□□□□ 0.16
SHKBP1-218ENST00000598907 TUT1Q9H6E5 874 aaKnown RBP16.03■□□□□ 0.16
SHKBP1-218ENST00000598907 EP300Q09472 2414 aaPredicted RBP16.03■□□□□ 0.16
SHKBP1-218ENST00000598907 EIF3JO75822 258 aaKnown RBP16.02■□□□□ 0.16
SHKBP1-218ENST00000598907 LGALS2P05162 132 aa16.02■□□□□ 0.16
SHKBP1-218ENST00000598907 PDHBP11177 359 aa16.02■□□□□ 0.16
SHKBP1-218ENST00000598907 TOP1P11387 765 aaKnown RBP16.02■□□□□ 0.16
SHKBP1-218ENST00000598907 MYCLP12524 364 aaPredicted RBP16.02■□□□□ 0.16
SHKBP1-218ENST00000598907 TECP42680 631 aa16.02■□□□□ 0.16
SHKBP1-218ENST00000598907 NT5C2P49902 561 aa16.02■□□□□ 0.16
SHKBP1-218ENST00000598907 GATMP50440 423 aa16.02■□□□□ 0.16
SHKBP1-218ENST00000598907 PUM1Q14671 1186 aaKnown RBP eCLIP16.02■□□□□ 0.16
SHKBP1-218ENST00000598907 LLGL2Q6P1M3 1020 aa16.02■□□□□ 0.16
SHKBP1-218ENST00000598907 MFSD6Q6ZSS7 791 aa16.02■□□□□ 0.16
SHKBP1-218ENST00000598907 CMTR2Q8IYT2 770 aaKnown RBP16.02■□□□□ 0.16
SHKBP1-218ENST00000598907 RNF41Q9H4P4 317 aaPredicted RBP16.02■□□□□ 0.16
SHKBP1-218ENST00000598907 NEDD4P46934 1319 aa16.01■□□□□ 0.15
SHKBP1-218ENST00000598907 ENPP3O14638 875 aa16.01■□□□□ 0.15
SHKBP1-218ENST00000598907 ASGR2P07307 311 aa16.01■□□□□ 0.15
SHKBP1-218ENST00000598907 NR3C2P08235 984 aa16.01■□□□□ 0.15
SHKBP1-218ENST00000598907 GOLGA8HP0CJ92 632 aa16.01■□□□□ 0.15
SHKBP1-218ENST00000598907 ARP10275 920 aa16.01■□□□□ 0.15
SHKBP1-218ENST00000598907 UBA1P22314 1058 aaKnown RBP16.01■□□□□ 0.15
SHKBP1-218ENST00000598907 HOXC8P31273 242 aa16.01■□□□□ 0.15
SHKBP1-218ENST00000598907 ARHGAP4P98171 946 aa16.01■□□□□ 0.15
SHKBP1-218ENST00000598907 ZNF543Q08ER8 600 aa16.01■□□□□ 0.15
SHKBP1-218ENST00000598907 COL9A3Q14050 684 aaPredicted RBP16.01■□□□□ 0.15
SHKBP1-218ENST00000598907 LPIN1Q14693 890 aa16.01■□□□□ 0.15
SHKBP1-218ENST00000598907 ANGPT1Q15389 498 aa16.01■□□□□ 0.15
SHKBP1-218ENST00000598907 NAALADL2Q58DX5 795 aa16.01■□□□□ 0.15
SHKBP1-218ENST00000598907 RRP12Q5JTH9 1297 aaKnown RBP16.01■□□□□ 0.15
SHKBP1-218ENST00000598907 CELF3Q5SZQ8 465 aaKnown RBP16.01■□□□□ 0.15
SHKBP1-218ENST00000598907 RGS22Q8NE09 1264 aa16.01■□□□□ 0.15
SHKBP1-218ENST00000598907 ATP8B4Q8TF62 1192 aa16.01■□□□□ 0.15
SHKBP1-218ENST00000598907 ZFP91Q96JP5 570 aaPredicted RBP16.01■□□□□ 0.15
SHKBP1-218ENST00000598907 CNNM2Q9H8M5 875 aa16.01■□□□□ 0.15
SHKBP1-218ENST00000598907 ZSWIM6Q9HCJ5 1215 aa16.01■□□□□ 0.15
SHKBP1-218ENST00000598907 PXMP2Q9NR77 195 aa16.01■□□□□ 0.15
SHKBP1-218ENST00000598907 TPRP12270 2363 aaKnown RBP16.01■□□□□ 0.15
SHKBP1-218ENST00000598907 C2CD4DB7Z1M9 353 aa16■□□□□ 0.15
SHKBP1-218ENST00000598907 CHRNA1P02708 482 aa16■□□□□ 0.15
SHKBP1-218ENST00000598907 SRGAP2BP0DMP2 458 aa16■□□□□ 0.15
SHKBP1-218ENST00000598907 PSMA5P28066 241 aa16■□□□□ 0.15
SHKBP1-218ENST00000598907 CDC37Q16543 378 aaPredicted RBP16■□□□□ 0.15
SHKBP1-218ENST00000598907 DUSP6Q16828 381 aa16■□□□□ 0.15
SHKBP1-218ENST00000598907 FAM26DQ5JW98 314 aa16■□□□□ 0.15
SHKBP1-218ENST00000598907 CWF19L1Q69YN2 538 aaKnown RBP16■□□□□ 0.15
SHKBP1-218ENST00000598907 ANKRD54Q6NXT1 300 aa16■□□□□ 0.15
SHKBP1-218ENST00000598907 TRIM50Q86XT4 487 aa16■□□□□ 0.15
SHKBP1-218ENST00000598907 MB21D2Q8IYB1 491 aaPredicted RBP16■□□□□ 0.15
SHKBP1-218ENST00000598907 NCOA7Q8NI08 942 aa16■□□□□ 0.15
SHKBP1-218ENST00000598907 JAKMIP1Q96N16 626 aaKnown RBP16■□□□□ 0.15
SHKBP1-218ENST00000598907 KRT23Q9C075 422 aa16■□□□□ 0.15
SHKBP1-218ENST00000598907 MLXIPQ9HAP2 919 aa16■□□□□ 0.15
SHKBP1-218ENST00000598907 NR2E1Q9Y466 385 aa16■□□□□ 0.15
SHKBP1-218ENST00000598907 ABCB11O95342 1321 aa15.99■□□□□ 0.15
SHKBP1-218ENST00000598907 ACACBO00763 2458 aa15.99■□□□□ 0.15
SHKBP1-218ENST00000598907 LMNAP02545 664 aaKnown RBP15.99■□□□□ 0.15
SHKBP1-218ENST00000598907 HMGB1P09429 215 aaKnown RBP15.99■□□□□ 0.15
SHKBP1-218ENST00000598907 NOVP48745 357 aa15.99■□□□□ 0.15
SHKBP1-218ENST00000598907 EXOSC10Q01780 885 aaKnown RBP15.99■□□□□ 0.15
SHKBP1-218ENST00000598907 SPOUT1Q5T280 376 aaKnown RBP15.99■□□□□ 0.15
SHKBP1-218ENST00000598907 LMBR1Q8WVP7 490 aa15.99■□□□□ 0.15
SHKBP1-218ENST00000598907 LINC01599Q8WXQ3 324 aa15.99■□□□□ 0.15
SHKBP1-218ENST00000598907 GPKOWQ92917 476 aaPredicted RBP eCLIP15.99■□□□□ 0.15
SHKBP1-218ENST00000598907 UBA5Q9GZZ9 404 aa15.99■□□□□ 0.15
SHKBP1-218ENST00000598907 S1PR5Q9H228 398 aa15.99■□□□□ 0.15
SHKBP1-218ENST00000598907 R4GN57 208 aa15.99■□□□□ 0.15
SHKBP1-218ENST00000598907 TTC3P53804 2025 aa15.99■□□□□ 0.15
SHKBP1-218ENST00000598907 B4E1Z4 1266 aa15.98■□□□□ 0.15
SHKBP1-218ENST00000598907 NOP56O00567 594 aaKnown RBP15.98■□□□□ 0.15
SHKBP1-218ENST00000598907 CFBP00751 764 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms