RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 MARCH8Q5T0T0 291 aa16.05■□□□□ 0.16
SHKBP1-217ENST00000598558 PRPF38BQ5VTL8 546 aaKnown RBP16.05■□□□□ 0.16
SHKBP1-217ENST00000598558 PLPPR4Q7Z2D5 763 aa16.05■□□□□ 0.16
SHKBP1-217ENST00000598558 VWCEQ96DN2 955 aa16.05■□□□□ 0.16
SHKBP1-217ENST00000598558 NOC4LQ9BVI4 516 aaKnown RBP16.05■□□□□ 0.16
SHKBP1-217ENST00000598558 PPP1R12CQ9BZL4 782 aa16.05■□□□□ 0.16
SHKBP1-217ENST00000598558 PRO3102Q9H379 93 aa16.05■□□□□ 0.16
SHKBP1-217ENST00000598558 DISC1Q9NRI5 854 aa16.05■□□□□ 0.16
SHKBP1-217ENST00000598558 GABBR1Q9UBS5 961 aa16.05■□□□□ 0.16
SHKBP1-217ENST00000598558 PCDHB6Q9Y5E3 794 aa16.05■□□□□ 0.16
SHKBP1-217ENST00000598558 PCDHA10Q9Y5I2 948 aa16.05■□□□□ 0.16
SHKBP1-217ENST00000598558 TBX3O15119 743 aa16.04■□□□□ 0.16
SHKBP1-217ENST00000598558 STBD1O95210 358 aa16.04■□□□□ 0.16
SHKBP1-217ENST00000598558 TIMP1P01033 207 aa16.04■□□□□ 0.16
SHKBP1-217ENST00000598558 INSRRP14616 1297 aa16.04■□□□□ 0.16
SHKBP1-217ENST00000598558 GNL2Q13823 731 aaKnown RBP16.04■□□□□ 0.16
SHKBP1-217ENST00000598558 TRIM71Q2Q1W2 868 aaKnown RBP16.04■□□□□ 0.16
SHKBP1-217ENST00000598558 TTC38Q5R3I4 469 aa16.04■□□□□ 0.16
SHKBP1-217ENST00000598558 MIS18BP1Q6P0N0 1132 aa16.04■□□□□ 0.16
SHKBP1-217ENST00000598558 FERMT3Q86UX7 667 aa16.04■□□□□ 0.16
SHKBP1-217ENST00000598558 AFAP1L1Q8TED9 768 aa16.04■□□□□ 0.16
SHKBP1-217ENST00000598558 TRAPPC12Q8WVT3 735 aa16.04■□□□□ 0.16
SHKBP1-217ENST00000598558 NAP1L4Q99733 375 aaKnown RBP16.04■□□□□ 0.16
SHKBP1-217ENST00000598558 ZNF302Q9NR11 478 aa16.04■□□□□ 0.16
SHKBP1-217ENST00000598558 ERAP1Q9NZ08 941 aa16.04■□□□□ 0.16
SHKBP1-217ENST00000598558 MTMR6Q9Y217 621 aa16.04■□□□□ 0.16
SHKBP1-217ENST00000598558 MAFBQ9Y5Q3 323 aaPredicted RBP16.04■□□□□ 0.16
SHKBP1-217ENST00000598558 C17orf102A2RUQ5 167 aa16.03■□□□□ 0.16
SHKBP1-217ENST00000598558 WDR64B1ANS9 1081 aa16.03■□□□□ 0.16
SHKBP1-217ENST00000598558 ZBTB42B2RXF5 422 aa16.03■□□□□ 0.16
SHKBP1-217ENST00000598558 BACH1O14867 736 aa16.03■□□□□ 0.16
SHKBP1-217ENST00000598558 NEMFO60524 1076 aa16.03■□□□□ 0.16
SHKBP1-217ENST00000598558 PSAPP07602 524 aa16.03■□□□□ 0.16
SHKBP1-217ENST00000598558 RAG1P15918 1043 aa16.03■□□□□ 0.16
SHKBP1-217ENST00000598558 PPP2R5CQ13362 524 aa16.03■□□□□ 0.16
SHKBP1-217ENST00000598558 CALCRLQ16602 461 aa16.03■□□□□ 0.16
SHKBP1-217ENST00000598558 PDXDC2PQ6P474 469 aa16.03■□□□□ 0.16
SHKBP1-217ENST00000598558 MIER3Q7Z3K6 550 aa16.03■□□□□ 0.16
SHKBP1-217ENST00000598558 SMAP1Q8IYB5 467 aaPredicted RBP16.03■□□□□ 0.16
SHKBP1-217ENST00000598558 LMBR1Q8WVP7 490 aa16.03■□□□□ 0.16
SHKBP1-217ENST00000598558 WNT8AQ9H1J5 351 aa16.03■□□□□ 0.16
SHKBP1-217ENST00000598558 HIPK3Q9H422 1215 aa16.03■□□□□ 0.16
SHKBP1-217ENST00000598558 AZI2Q9H6S1 392 aa16.03■□□□□ 0.16
SHKBP1-217ENST00000598558 WRAP73Q9P2S5 460 aaPredicted RBP16.03■□□□□ 0.16
SHKBP1-217ENST00000598558 ZNF215Q9UL58 517 aaPredicted RBP16.03■□□□□ 0.16
SHKBP1-217ENST00000598558 VPS37CA5D8V6 355 aaPredicted RBP16.02■□□□□ 0.16
SHKBP1-217ENST00000598558 TXKP42681 527 aa16.02■□□□□ 0.16
SHKBP1-217ENST00000598558 TRAPPC10P48553 1259 aa16.02■□□□□ 0.16
SHKBP1-217ENST00000598558 CCL23P55773 120 aa16.02■□□□□ 0.16
SHKBP1-217ENST00000598558 RESTQ13127 1097 aa16.02■□□□□ 0.16
SHKBP1-217ENST00000598558 GPNMBQ14956 572 aa16.02■□□□□ 0.16
SHKBP1-217ENST00000598558 GRIK4Q16099 956 aa16.02■□□□□ 0.16
SHKBP1-217ENST00000598558 IL17AQ16552 155 aa16.02■□□□□ 0.16
SHKBP1-217ENST00000598558 FAM173BQ6P4H8 233 aa16.02■□□□□ 0.16
SHKBP1-217ENST00000598558 TRAF7Q6Q0C0 670 aa16.02■□□□□ 0.16
SHKBP1-217ENST00000598558 CHRDL2Q6WN34 429 aa16.02■□□□□ 0.16
SHKBP1-217ENST00000598558 RUFY4Q6ZNE9 571 aa16.02■□□□□ 0.16
SHKBP1-217ENST00000598558 C16orf59Q7L2K0 433 aa16.02■□□□□ 0.16
SHKBP1-217ENST00000598558 TRMT1LQ7Z2T5 733 aaKnown RBP16.02■□□□□ 0.16
SHKBP1-217ENST00000598558 SCLYQ96I15 445 aa16.02■□□□□ 0.16
SHKBP1-217ENST00000598558 OSBPL7Q9BZF2 842 aa16.02■□□□□ 0.16
SHKBP1-217ENST00000598558 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.02■□□□□ 0.16
SHKBP1-217ENST00000598558 PRKAG2Q9UGJ0 569 aa16.02■□□□□ 0.16
SHKBP1-217ENST00000598558 COLQQ9Y215 455 aaPredicted RBP16.02■□□□□ 0.16
SHKBP1-217ENST00000598558 SAMM50Q9Y512 469 aa16.02■□□□□ 0.16
SHKBP1-217ENST00000598558 PDE4DIPQ5VU43 2346 aa16.02■□□□□ 0.15
SHKBP1-217ENST00000598558 IGSF9BQ9UPX0 1349 aa16.01■□□□□ 0.15
SHKBP1-217ENST00000598558 POTEB3A0JP26 581 aa16.01■□□□□ 0.15
SHKBP1-217ENST00000598558 TMEM150BA6NC51 233 aa16.01■□□□□ 0.15
SHKBP1-217ENST00000598558 CSF2RAP15509 400 aa16.01■□□□□ 0.15
SHKBP1-217ENST00000598558 SFNP31947 248 aa16.01■□□□□ 0.15
SHKBP1-217ENST00000598558 JAK3P52333 1124 aa16.01■□□□□ 0.15
SHKBP1-217ENST00000598558 IGBP1P78318 339 aa16.01■□□□□ 0.15
SHKBP1-217ENST00000598558 PPFIA1Q13136 1202 aa16.01■□□□□ 0.15
SHKBP1-217ENST00000598558 PTK7Q13308 1070 aa16.01■□□□□ 0.15
SHKBP1-217ENST00000598558 FAM160B1Q5W0V3 765 aa16.01■□□□□ 0.15
SHKBP1-217ENST00000598558 MFSD5Q6N075 450 aa16.01■□□□□ 0.15
SHKBP1-217ENST00000598558 POTEBQ6S5H4 581 aa16.01■□□□□ 0.15
SHKBP1-217ENST00000598558 SERINC5Q86VE9 423 aa16.01■□□□□ 0.15
SHKBP1-217ENST00000598558 BANK1Q8NDB2 785 aa16.01■□□□□ 0.15
SHKBP1-217ENST00000598558 ATP8B4Q8TF62 1192 aa16.01■□□□□ 0.15
SHKBP1-217ENST00000598558 ATP6V0A1Q93050 837 aa16.01■□□□□ 0.15
SHKBP1-217ENST00000598558 TTC12Q9H892 705 aaPredicted RBP16.01■□□□□ 0.15
SHKBP1-217ENST00000598558 RGL1Q9NZL6 768 aa16.01■□□□□ 0.15
SHKBP1-217ENST00000598558 NRCAMQ92823 1304 aa16■□□□□ 0.15
SHKBP1-217ENST00000598558 MBLAC1A4D2B0 266 aaPredicted RBP16■□□□□ 0.15
SHKBP1-217ENST00000598558 MARCH6O60337 910 aa16■□□□□ 0.15
SHKBP1-217ENST00000598558 BAG4O95429 457 aaKnown RBP16■□□□□ 0.15
SHKBP1-217ENST00000598558 PDCP20941 246 aa16■□□□□ 0.15
SHKBP1-217ENST00000598558 PTGDRQ13258 359 aa16■□□□□ 0.15
SHKBP1-217ENST00000598558 EPHA7Q15375 998 aa16■□□□□ 0.15
SHKBP1-217ENST00000598558 NCAPH2Q6IBW4 605 aa16■□□□□ 0.15
SHKBP1-217ENST00000598558 SLFN12Q8IYM2 578 aa16■□□□□ 0.15
SHKBP1-217ENST00000598558 RDM1Q8NG50 284 aa16■□□□□ 0.15
SHKBP1-217ENST00000598558 DYDC2Q96IM9 177 aa16■□□□□ 0.15
SHKBP1-217ENST00000598558 NOL7Q9UMY1 257 aaKnown RBP16■□□□□ 0.15
SHKBP1-217ENST00000598558 PCDHA12Q9UN75 941 aa16■□□□□ 0.15
SHKBP1-217ENST00000598558 TRPC6Q9Y210 931 aa16■□□□□ 0.15
SHKBP1-217ENST00000598558 NOD1Q9Y239 953 aa16■□□□□ 0.15
SHKBP1-217ENST00000598558 A0A087WWV3 80 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms