RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 ZSWIM5Q9P217 1185 aa11.72□□□□□ -0.53
TRIM28-210ENST00000597618 TUBE1Q9UJT0 475 aa11.72□□□□□ -0.53
TRIM28-210ENST00000597618 PCDHB15Q9Y5E8 787 aa11.72□□□□□ -0.53
TRIM28-210ENST00000597618 TTC3P53804 2025 aa11.71□□□□□ -0.53
TRIM28-210ENST00000597618 DCHS1Q96JQ0 3298 aa11.71□□□□□ -0.53
TRIM28-210ENST00000597618 MYH6P13533 1939 aa11.71□□□□□ -0.53
TRIM28-210ENST00000597618 PROB1E7EW31 1015 aa11.71□□□□□ -0.53
TRIM28-210ENST00000597618 STAG3L1P0CL83 205 aa11.71□□□□□ -0.53
TRIM28-210ENST00000597618 MRPS9P82933 396 aaKnown RBP11.71□□□□□ -0.53
TRIM28-210ENST00000597618 SP4Q02446 784 aa11.71□□□□□ -0.53
TRIM28-210ENST00000597618 SEMA3FQ13275 785 aa11.71□□□□□ -0.53
TRIM28-210ENST00000597618 HOMER1Q86YM7 354 aa11.71□□□□□ -0.53
TRIM28-210ENST00000597618 GIMAP8Q8ND71 665 aaPredicted RBP11.71□□□□□ -0.53
TRIM28-210ENST00000597618 LINC01599Q8WXQ3 324 aa11.71□□□□□ -0.53
TRIM28-210ENST00000597618 SUSD6Q92537 303 aa11.71□□□□□ -0.53
TRIM28-210ENST00000597618 CDCA3Q99618 268 aaPredicted RBP11.71□□□□□ -0.53
TRIM28-210ENST00000597618 SENP7Q9BQF6 1050 aa11.71□□□□□ -0.53
TRIM28-210ENST00000597618 KRT23Q9C075 422 aa11.71□□□□□ -0.53
TRIM28-210ENST00000597618 TLE6Q9H808 572 aa11.71□□□□□ -0.53
TRIM28-210ENST00000597618 SUPT16HQ9Y5B9 1047 aaKnown RBP11.71□□□□□ -0.53
TRIM28-210ENST00000597618 GVINP1Q7Z2Y8 2422 aa11.71□□□□□ -0.54
TRIM28-210ENST00000597618 FAM186AA6NE01 2351 aa11.71□□□□□ -0.54
TRIM28-210ENST00000597618 MBLAC1A4D2B0 266 aaPredicted RBP11.7□□□□□ -0.54
TRIM28-210ENST00000597618 H0Y858 1186 aa11.7□□□□□ -0.54
TRIM28-210ENST00000597618 SRGAP2BP0DMP2 458 aa11.7□□□□□ -0.54
TRIM28-210ENST00000597618 CD52P31358 61 aa11.7□□□□□ -0.54
TRIM28-210ENST00000597618 MRPS6P82932 125 aaKnown RBP11.7□□□□□ -0.54
TRIM28-210ENST00000597618 UBE3AQ05086 875 aa11.7□□□□□ -0.54
TRIM28-210ENST00000597618 GRIK4Q16099 956 aa11.7□□□□□ -0.54
TRIM28-210ENST00000597618 PAN2Q504Q3 1202 aaKnown RBP11.7□□□□□ -0.54
TRIM28-210ENST00000597618 ANKRD45Q5TZF3 282 aa11.7□□□□□ -0.54
TRIM28-210ENST00000597618 ZBTB33Q86T24 672 aa11.7□□□□□ -0.54
TRIM28-210ENST00000597618 CRIPAKQ8N1N5 446 aa11.7□□□□□ -0.54
TRIM28-210ENST00000597618 DNAJB3Q8WWF6 145 aa11.7□□□□□ -0.54
TRIM28-210ENST00000597618 NEK1Q96PY6 1258 aa11.7□□□□□ -0.54
TRIM28-210ENST00000597618 CNNM2Q9H8M5 875 aa11.7□□□□□ -0.54
TRIM28-210ENST00000597618 TLR9Q9NR96 1032 aa11.7□□□□□ -0.54
TRIM28-210ENST00000597618 MAD2L2Q9UI95 211 aa11.7□□□□□ -0.54
TRIM28-210ENST00000597618 CDY2AQ9Y6F7 541 aa11.7□□□□□ -0.54
TRIM28-210ENST00000597618 SQORQ9Y6N5 450 aa11.7□□□□□ -0.54
TRIM28-210ENST00000597618 LAMA4Q16363 1823 aa11.7□□□□□ -0.54
TRIM28-210ENST00000597618 WDR87Q6ZQQ6 2873 aa11.69□□□□□ -0.54
TRIM28-210ENST00000597618 PALM3A6NDB9 673 aaPredicted RBP11.69□□□□□ -0.54
TRIM28-210ENST00000597618 M0QZ92 97 aa11.69□□□□□ -0.54
TRIM28-210ENST00000597618 GALR2O43603 387 aaPredicted RBP11.69□□□□□ -0.54
TRIM28-210ENST00000597618 SCG2P13521 617 aa11.69□□□□□ -0.54
TRIM28-210ENST00000597618 TCF7P36402 384 aaPredicted RBP11.69□□□□□ -0.54
TRIM28-210ENST00000597618 IMMTQ16891 758 aaKnown RBP11.69□□□□□ -0.54
TRIM28-210ENST00000597618 IER5Q5VY09 327 aa11.69□□□□□ -0.54
TRIM28-210ENST00000597618 XRRA1Q6P2D8 792 aa11.69□□□□□ -0.54
TRIM28-210ENST00000597618 MICAL1Q8TDZ2 1067 aa11.69□□□□□ -0.54
TRIM28-210ENST00000597618 ATP8B4Q8TF62 1192 aa11.69□□□□□ -0.54
TRIM28-210ENST00000597618 PIGSQ96S52 555 aa11.69□□□□□ -0.54
TRIM28-210ENST00000597618 AGO3Q9H9G7 860 aaKnown RBP11.69□□□□□ -0.54
TRIM28-210ENST00000597618 AAASQ9NRG9 546 aa11.69□□□□□ -0.54
TRIM28-210ENST00000597618 ERAP1Q9NZ08 941 aa11.69□□□□□ -0.54
TRIM28-210ENST00000597618 RTEL1Q9NZ71 1219 aa11.69□□□□□ -0.54
TRIM28-210ENST00000597618 TELO2Q9Y4R8 837 aa11.69□□□□□ -0.54
TRIM28-210ENST00000597618 PCDHB12Q9Y5F1 795 aa11.69□□□□□ -0.54
TRIM28-210ENST00000597618 PCDHGC5Q9Y5F6 944 aa11.69□□□□□ -0.54
TRIM28-210ENST00000597618 PNMA6FA0A0J9YX94 578 aa11.68□□□□□ -0.54
TRIM28-210ENST00000597618 PRR23AA6NEV1 266 aa11.68□□□□□ -0.54
TRIM28-210ENST00000597618 SDSP20132 328 aa11.68□□□□□ -0.54
TRIM28-210ENST00000597618 PAK2Q13177 524 aa11.68□□□□□ -0.54
TRIM28-210ENST00000597618 DUSP6Q16828 381 aa11.68□□□□□ -0.54
TRIM28-210ENST00000597618 MARCH8Q5T0T0 291 aa11.68□□□□□ -0.54
TRIM28-210ENST00000597618 PCNX4Q63HM2 1172 aa11.68□□□□□ -0.54
TRIM28-210ENST00000597618 PDE12Q6L8Q7 609 aaKnown RBP11.68□□□□□ -0.54
TRIM28-210ENST00000597618 ERMP1Q7Z2K6 904 aa11.68□□□□□ -0.54
TRIM28-210ENST00000597618 NLRX1Q86UT6 975 aa11.68□□□□□ -0.54
TRIM28-210ENST00000597618 VN1R2Q8NFZ6 395 aa11.68□□□□□ -0.54
TRIM28-210ENST00000597618 GLG1Q92896 1179 aa11.68□□□□□ -0.54
TRIM28-210ENST00000597618 RILPL2Q969X0 211 aa11.68□□□□□ -0.54
TRIM28-210ENST00000597618 CDHR1Q96JP9 859 aa11.68□□□□□ -0.54
TRIM28-210ENST00000597618 RIPOR3Q96MK2 946 aa11.68□□□□□ -0.54
TRIM28-210ENST00000597618 RIOX1Q9H6W3 641 aa11.68□□□□□ -0.54
TRIM28-210ENST00000597618 LRFN2Q9ULH4 789 aa11.68□□□□□ -0.54
TRIM28-210ENST00000597618 IGSF9BQ9UPX0 1349 aa11.67□□□□□ -0.54
TRIM28-210ENST00000597618 RRN3P2A6NIE6 340 aa11.67□□□□□ -0.54
TRIM28-210ENST00000597618 PER2O15055 1255 aa11.67□□□□□ -0.54
TRIM28-210ENST00000597618 PPFIA3O75145 1194 aa11.67□□□□□ -0.54
TRIM28-210ENST00000597618 MARK3P27448 753 aa11.67□□□□□ -0.54
TRIM28-210ENST00000597618 NBL1P41271 181 aa11.67□□□□□ -0.54
TRIM28-210ENST00000597618 RBM10P98175 930 aaKnown RBP11.67□□□□□ -0.54
TRIM28-210ENST00000597618 MTMR3Q13615 1198 aa11.67□□□□□ -0.54
TRIM28-210ENST00000597618 GRM4Q14833 912 aa11.67□□□□□ -0.54
TRIM28-210ENST00000597618 SEC23AQ15436 765 aa11.67□□□□□ -0.54
TRIM28-210ENST00000597618 SLC35G1Q2M3R5 365 aa11.67□□□□□ -0.54
TRIM28-210ENST00000597618 SPOUT1Q5T280 376 aaKnown RBP11.67□□□□□ -0.54
TRIM28-210ENST00000597618 FAM43BQ6ZT52 329 aaPredicted RBP11.67□□□□□ -0.54
TRIM28-210ENST00000597618 ASCL5Q7RTU5 278 aa11.67□□□□□ -0.54
TRIM28-210ENST00000597618 RTN4RL1Q86UN2 441 aaPredicted RBP11.67□□□□□ -0.54
TRIM28-210ENST00000597618 UBALD2Q8IYN6 164 aa11.67□□□□□ -0.54
TRIM28-210ENST00000597618 SEPT1Q8WYJ6 367 aa11.67□□□□□ -0.54
TRIM28-210ENST00000597618 GPRASP2Q96D09 838 aa11.67□□□□□ -0.54
TRIM28-210ENST00000597618 DSCC1Q9BVC3 393 aa11.67□□□□□ -0.54
TRIM28-210ENST00000597618 FAM49AQ9H0Q0 323 aaPredicted RBP11.67□□□□□ -0.54
TRIM28-210ENST00000597618 SMARCAD1Q9H4L7 1026 aa11.67□□□□□ -0.54
TRIM28-210ENST00000597618 RNF216Q9NWF9 866 aaPredicted RBP11.67□□□□□ -0.54
TRIM28-210ENST00000597618 PADI3Q9ULW8 664 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms