RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 GYG2O15488 501 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 CALML3P27482 149 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 VHLP40337 213 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 PSMD7P51665 324 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 CREG2Q8IUH2 290 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 SPICE1Q8N0Z3 855 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 STAG2Q8N3U4 1231 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 DHTKD1Q96HY7 919 aaPredicted RBP13.32□□□□□ -0.28
LIG1-207ENST00000594759 CLMNQ96JQ2 1002 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 TGS1Q96RS0 853 aaKnown RBP13.32□□□□□ -0.28
LIG1-207ENST00000594759 SYNCQ9H7C4 482 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 TBK1Q9UHD2 729 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 SNX24Q9Y343 169 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 IKBKGQ9Y6K9 419 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 ARHGAP42A6NI28 874 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 CDR2Q01850 454 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 KIFAP3Q92845 792 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 P2RX5Q93086 422 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 LRRC27Q9C0I9 530 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 THEGQ9P2T0 379 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 TMEM131LA2VDJ0 1609 aa13.31□□□□□ -0.28
LIG1-207ENST00000594759 CD163L1Q9NR16 1453 aa13.31□□□□□ -0.28
LIG1-207ENST00000594759 OVOS2A0A0J9YW53 1432 aa13.31□□□□□ -0.28
LIG1-207ENST00000594759 OVOS2Q6IE36 1432 aa13.31□□□□□ -0.28
LIG1-207ENST00000594759 SUPT3HO75486 399 aa13.31□□□□□ -0.28
LIG1-207ENST00000594759 MBD4O95243 580 aa13.31□□□□□ -0.28
LIG1-207ENST00000594759 H2AFZP0C0S5 128 aa13.31□□□□□ -0.28
LIG1-207ENST00000594759 ACADSP16219 412 aa13.31□□□□□ -0.28
LIG1-207ENST00000594759 BMP6P22004 513 aa13.31□□□□□ -0.28
LIG1-207ENST00000594759 SCNN1BP51168 640 aa13.31□□□□□ -0.28
LIG1-207ENST00000594759 H2AFVQ71UI9 128 aa13.31□□□□□ -0.28
LIG1-207ENST00000594759 IQCKQ8N0W5 287 aa13.31□□□□□ -0.28
LIG1-207ENST00000594759 SYNE4Q8N205 404 aa13.31□□□□□ -0.28
LIG1-207ENST00000594759 PIGBQ92521 554 aa13.31□□□□□ -0.28
LIG1-207ENST00000594759 FBXO2Q9UK22 296 aaPredicted RBP13.31□□□□□ -0.28
LIG1-207ENST00000594759 KIAA1210Q9ULL0 1709 aa13.31□□□□□ -0.28
LIG1-207ENST00000594759 VPS41P49754 854 aa13.31□□□□□ -0.28
LIG1-207ENST00000594759 PTPAQ15257 358 aa13.31□□□□□ -0.28
LIG1-207ENST00000594759 LACTB2Q53H82 288 aaPredicted RBP13.31□□□□□ -0.28
LIG1-207ENST00000594759 PPP1R21Q6ZMI0 780 aa13.31□□□□□ -0.28
LIG1-207ENST00000594759 ASAP2O43150 1006 aa13.31□□□□□ -0.28
LIG1-207ENST00000594759 THAP12O43422 761 aa13.31□□□□□ -0.28
LIG1-207ENST00000594759 CD44P16070 742 aaKnown RBP13.31□□□□□ -0.28
LIG1-207ENST00000594759 GSTT1P30711 240 aa13.31□□□□□ -0.28
LIG1-207ENST00000594759 DR1Q01658 176 aa13.31□□□□□ -0.28
LIG1-207ENST00000594759 RNASELQ05823 741 aaKnown RBP13.31□□□□□ -0.28
LIG1-207ENST00000594759 SV2BQ7L1I2 683 aa13.31□□□□□ -0.28
LIG1-207ENST00000594759 ANKRD35Q8N283 1001 aa13.31□□□□□ -0.28
LIG1-207ENST00000594759 UBL4BQ8N7F7 174 aa13.31□□□□□ -0.28
LIG1-207ENST00000594759 TSPYL2Q9H2G4 693 aaPredicted RBP13.31□□□□□ -0.28
LIG1-207ENST00000594759 HOMER2Q9NSB8 354 aa13.31□□□□□ -0.28
LIG1-207ENST00000594759 FBXO3Q9UK99 471 aa13.31□□□□□ -0.28
LIG1-207ENST00000594759 RTCBQ9Y3I0 505 aaKnown RBP13.31□□□□□ -0.28
LIG1-207ENST00000594759 F8W031 263 aaPredicted RBP13.3□□□□□ -0.28
LIG1-207ENST00000594759 SH2B2O14492 632 aaPredicted RBP13.3□□□□□ -0.28
LIG1-207ENST00000594759 FMNL1O95466 1100 aaPredicted RBP13.3□□□□□ -0.28
LIG1-207ENST00000594759 CYLC2Q14093 348 aaPredicted RBP13.3□□□□□ -0.28
LIG1-207ENST00000594759 PPP1R14CQ8TAE6 165 aa13.3□□□□□ -0.28
LIG1-207ENST00000594759 NDNQ99608 321 aa13.3□□□□□ -0.28
LIG1-207ENST00000594759 RTN2O75298 545 aa13.3□□□□□ -0.28
LIG1-207ENST00000594759 ECEL1O95672 775 aa13.3□□□□□ -0.28
LIG1-207ENST00000594759 EEF2P13639 858 aaKnown RBP13.3□□□□□ -0.28
LIG1-207ENST00000594759 PPP1R15BQ5SWA1 713 aa13.3□□□□□ -0.28
LIG1-207ENST00000594759 ZNF654Q8IZM8 581 aa13.3□□□□□ -0.28
LIG1-207ENST00000594759 ERP27Q96DN0 273 aa13.3□□□□□ -0.28
LIG1-207ENST00000594759 PUS7LQ9H0K6 701 aaKnown RBP13.3□□□□□ -0.28
LIG1-207ENST00000594759 NDST4Q9H3R1 872 aa13.3□□□□□ -0.28
LIG1-207ENST00000594759 PPLO60437 1756 aa13.3□□□□□ -0.28
LIG1-207ENST00000594759 LRRC53A6NM62 1247 aa13.3□□□□□ -0.28
LIG1-207ENST00000594759 CALB2P22676 271 aa13.3□□□□□ -0.28
LIG1-207ENST00000594759 KPNB1Q14974 876 aaKnown RBP13.3□□□□□ -0.28
LIG1-207ENST00000594759 CLUL1Q15846 466 aa13.3□□□□□ -0.28
LIG1-207ENST00000594759 PI16Q6UXB8 463 aa13.3□□□□□ -0.28
LIG1-207ENST00000594759 GSTA5Q7RTV2 222 aa13.3□□□□□ -0.28
LIG1-207ENST00000594759 MB21D2Q8IYB1 491 aaPredicted RBP13.3□□□□□ -0.28
LIG1-207ENST00000594759 FANCBQ8NB91 859 aa13.3□□□□□ -0.28
LIG1-207ENST00000594759 OXER1Q8TDS5 423 aa13.3□□□□□ -0.28
LIG1-207ENST00000594759 PCDHGC5Q9Y5F6 944 aa13.3□□□□□ -0.28
LIG1-207ENST00000594759 BZW2Q9Y6E2 419 aaKnown RBP13.3□□□□□ -0.28
LIG1-207ENST00000594759 ATP2A1O14983 1001 aa13.29□□□□□ -0.28
LIG1-207ENST00000594759 PDE8AO60658 829 aa13.29□□□□□ -0.28
LIG1-207ENST00000594759 DKC1O60832 514 aaKnown RBP eCLIP13.29□□□□□ -0.281e-6■■□□□ 12.5
LIG1-207ENST00000594759 RNF8O76064 485 aa13.29□□□□□ -0.28
LIG1-207ENST00000594759 AGTP01019 485 aa13.29□□□□□ -0.28
LIG1-207ENST00000594759 CCNE1P24864 410 aa13.29□□□□□ -0.28
LIG1-207ENST00000594759 ADORA1P30542 326 aa13.29□□□□□ -0.28
LIG1-207ENST00000594759 HSPA9P38646 679 aaKnown RBP13.29□□□□□ -0.28
LIG1-207ENST00000594759 IRX4P78413 519 aa13.29□□□□□ -0.28
LIG1-207ENST00000594759 CD302Q8IX05 232 aa13.29□□□□□ -0.28
LIG1-207ENST00000594759 PRPF31Q8WWY3 499 aaKnown RBP13.29□□□□□ -0.28
LIG1-207ENST00000594759 CCT6BQ92526 530 aa13.29□□□□□ -0.28
LIG1-207ENST00000594759 TTC1Q99614 292 aa13.29□□□□□ -0.28
LIG1-207ENST00000594759 MTRQ99707 1265 aa13.29□□□□□ -0.28
LIG1-207ENST00000594759 HSD3B7Q9H2F3 369 aa13.29□□□□□ -0.28
LIG1-207ENST00000594759 GREM2Q9H772 168 aa13.29□□□□□ -0.28
LIG1-207ENST00000594759 EBF2Q9HAK2 575 aa13.29□□□□□ -0.28
LIG1-207ENST00000594759 ABCF3Q9NUQ8 709 aa13.29□□□□□ -0.28
LIG1-207ENST00000594759 ESRRAP11474 423 aaPredicted RBP13.29□□□□□ -0.28
LIG1-207ENST00000594759 BRAFP15056 766 aa13.29□□□□□ -0.28
LIG1-207ENST00000594759 IFNAR1P17181 557 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms