RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 TEX2Q8IWB9 1127 aa13.47□□□□□ -0.25
CLIP3-204ENST00000590559 BANK1Q8NDB2 785 aa13.47□□□□□ -0.25
CLIP3-204ENST00000590559 LINC01599Q8WXQ3 324 aa13.47□□□□□ -0.25
CLIP3-204ENST00000590559 PABPC5Q96DU9 382 aaKnown RBP13.47□□□□□ -0.25
CLIP3-204ENST00000590559 IL17RAQ96F46 866 aa13.47□□□□□ -0.25
CLIP3-204ENST00000590559 SMARCAD1Q9H4L7 1026 aa13.47□□□□□ -0.25
CLIP3-204ENST00000590559 TUBE1Q9UJT0 475 aa13.47□□□□□ -0.25
CLIP3-204ENST00000590559 SQORQ9Y6N5 450 aa13.47□□□□□ -0.25
CLIP3-204ENST00000590559 FNDC1Q4ZHG4 1894 aaPredicted RBP13.46□□□□□ -0.25
CLIP3-204ENST00000590559 PLXNA4Q9HCM2 1894 aa13.46□□□□□ -0.25
CLIP3-204ENST00000590559 CNTNAP5Q8WYK1 1306 aa13.46□□□□□ -0.25
CLIP3-204ENST00000590559 EVPLQ92817 2033 aa13.46□□□□□ -0.25
CLIP3-204ENST00000590559 POTEB3A0JP26 581 aa13.46□□□□□ -0.25
CLIP3-204ENST00000590559 ATG7O95352 703 aa13.46□□□□□ -0.25
CLIP3-204ENST00000590559 RB1P06400 928 aa13.46□□□□□ -0.25
CLIP3-204ENST00000590559 BMPR1AP36894 532 aa13.46□□□□□ -0.25
CLIP3-204ENST00000590559 EXOSC10Q01780 885 aaKnown RBP13.46□□□□□ -0.25
CLIP3-204ENST00000590559 PUS10Q3MIT2 529 aaKnown RBP13.46□□□□□ -0.25
CLIP3-204ENST00000590559 TCEAL5Q5H9L2 206 aa13.46□□□□□ -0.25
CLIP3-204ENST00000590559 TMEM31Q5JXX7 168 aa13.46□□□□□ -0.25
CLIP3-204ENST00000590559 PTCRAQ6ISU1 281 aaPredicted RBP13.46□□□□□ -0.25
CLIP3-204ENST00000590559 POTEBQ6S5H4 581 aa13.46□□□□□ -0.25
CLIP3-204ENST00000590559 NFXL1Q6ZNB6 911 aa13.46□□□□□ -0.25
CLIP3-204ENST00000590559 TSHZ1Q6ZSZ6 1077 aa13.46□□□□□ -0.25
CLIP3-204ENST00000590559 RTN4RL1Q86UN2 441 aaPredicted RBP13.46□□□□□ -0.25
CLIP3-204ENST00000590559 GJD3Q8N144 294 aa13.46□□□□□ -0.25
CLIP3-204ENST00000590559 FIBCD1Q8N539 461 aa13.46□□□□□ -0.25
CLIP3-204ENST00000590559 CYP2W1Q8TAV3 490 aa13.46□□□□□ -0.25
CLIP3-204ENST00000590559 DNAJB3Q8WWF6 145 aa13.46□□□□□ -0.25
CLIP3-204ENST00000590559 MXRA8Q9BRK3 442 aa13.46□□□□□ -0.25
CLIP3-204ENST00000590559 LRRC2Q9BYS8 371 aa13.46□□□□□ -0.25
CLIP3-204ENST00000590559 NSUN3Q9H649 340 aaKnown RBP13.46□□□□□ -0.25
CLIP3-204ENST00000590559 AGO3Q9H9G7 860 aaKnown RBP13.46□□□□□ -0.25
CLIP3-204ENST00000590559 KCNH7Q9NS40 1196 aa13.46□□□□□ -0.25
CLIP3-204ENST00000590559 SLC12A7Q9Y666 1083 aa13.46□□□□□ -0.25
CLIP3-204ENST00000590559 NFASCO94856 1347 aa13.45□□□□□ -0.26
CLIP3-204ENST00000590559 ADGRA3Q8IWK6 1321 aa13.45□□□□□ -0.26
CLIP3-204ENST00000590559 SPDYE3A6NKU9 549 aa13.45□□□□□ -0.26
CLIP3-204ENST00000590559 DGKIO75912 1065 aa13.45□□□□□ -0.26
CLIP3-204ENST00000590559 RPLP2P05387 115 aaKnown RBP13.45□□□□□ -0.26
CLIP3-204ENST00000590559 INSRRP14616 1297 aa13.45□□□□□ -0.26
CLIP3-204ENST00000590559 MARK3P27448 753 aa13.45□□□□□ -0.26
CLIP3-204ENST00000590559 MRPS6P82932 125 aaKnown RBP13.45□□□□□ -0.26
CLIP3-204ENST00000590559 CAMK1Q14012 370 aa13.45□□□□□ -0.26
CLIP3-204ENST00000590559 WWC2Q6AWC2 1192 aa13.45□□□□□ -0.26
CLIP3-204ENST00000590559 APOA5Q6Q788 366 aa13.45□□□□□ -0.26
CLIP3-204ENST00000590559 RAB11FIP4Q86YS3 637 aa13.45□□□□□ -0.26
CLIP3-204ENST00000590559 CCDC82Q8N4S0 544 aa13.45□□□□□ -0.26
CLIP3-204ENST00000590559 ZBTB10Q96DT7 871 aa13.45□□□□□ -0.26
CLIP3-204ENST00000590559 LMAN2LQ9H0V9 348 aa13.45□□□□□ -0.26
CLIP3-204ENST00000590559 JPH1Q9HDC5 661 aaPredicted RBP13.45□□□□□ -0.26
CLIP3-204ENST00000590559 RIC8AQ9NPQ8 531 aa13.45□□□□□ -0.26
CLIP3-204ENST00000590559 SLC9A2Q9UBY0 812 aa13.45□□□□□ -0.26
CLIP3-204ENST00000590559 CDY2AQ9Y6F7 541 aa13.45□□□□□ -0.26
CLIP3-204ENST00000590559 KDM3AQ9Y4C1 1321 aa13.44□□□□□ -0.26
CLIP3-204ENST00000590559 MYH9P35579 1960 aaKnown RBP13.44□□□□□ -0.26
CLIP3-204ENST00000590559 IGKV6D-21A0A0A0MT36 114 aa13.44□□□□□ -0.26
CLIP3-204ENST00000590559 RRN3P2A6NIE6 340 aa13.44□□□□□ -0.26
CLIP3-204ENST00000590559 C19orf67A6NJJ6 358 aa13.44□□□□□ -0.26
CLIP3-204ENST00000590559 H3BQ06 376 aaPredicted RBP13.44□□□□□ -0.26
CLIP3-204ENST00000590559 GRM6O15303 877 aa13.44□□□□□ -0.26
CLIP3-204ENST00000590559 CLK2P49760 499 aaKnown RBP13.44□□□□□ -0.26
CLIP3-204ENST00000590559 IRX6P78412 446 aaPredicted RBP13.44□□□□□ -0.26
CLIP3-204ENST00000590559 ITGB3BPQ13352 177 aaPredicted RBP13.44□□□□□ -0.26
CLIP3-204ENST00000590559 PLCB4Q15147 1175 aa13.44□□□□□ -0.26
CLIP3-204ENST00000590559 TSGA10IPQ3SY00 556 aa13.44□□□□□ -0.26
CLIP3-204ENST00000590559 PLPPR4Q7Z2D5 763 aa13.44□□□□□ -0.26
CLIP3-204ENST00000590559 RSPH3Q86UC2 560 aa13.44□□□□□ -0.26
CLIP3-204ENST00000590559 CRYGNQ8WXF5 182 aa13.44□□□□□ -0.26
CLIP3-204ENST00000590559 GLG1Q92896 1179 aa13.44□□□□□ -0.26
CLIP3-204ENST00000590559 FAM122AQ96E09 287 aa13.44□□□□□ -0.26
CLIP3-204ENST00000590559 PKD2L1Q9P0L9 805 aa13.44□□□□□ -0.26
CLIP3-204ENST00000590559 RWDD3Q9Y3V2 267 aa13.44□□□□□ -0.26
CLIP3-204ENST00000590559 PCDHA2Q9Y5H9 948 aa13.44□□□□□ -0.26
CLIP3-204ENST00000590559 IGSF9BQ9UPX0 1349 aa13.43□□□□□ -0.26
CLIP3-204ENST00000590559 MEIS1O00470 390 aa13.43□□□□□ -0.26
CLIP3-204ENST00000590559 ARP10275 920 aa13.43□□□□□ -0.26
CLIP3-204ENST00000590559 HOXD11P31277 338 aaPredicted RBP13.43□□□□□ -0.26
CLIP3-204ENST00000590559 CD52P31358 61 aa13.43□□□□□ -0.26
CLIP3-204ENST00000590559 CTNNB1P35222 781 aa13.43□□□□□ -0.26
CLIP3-204ENST00000590559 ACTR2P61160 394 aa13.43□□□□□ -0.26
CLIP3-204ENST00000590559 PPP1R18Q6NYC8 613 aa13.43□□□□□ -0.26
CLIP3-204ENST00000590559 USP34Q70CQ2 3546 aa13.43□□□□□ -0.26
CLIP3-204ENST00000590559 HEATR3Q7Z4Q2 680 aa13.43□□□□□ -0.26
CLIP3-204ENST00000590559 MICU3Q86XE3 530 aa13.43□□□□□ -0.26
CLIP3-204ENST00000590559 C11orf84Q9BUA3 381 aaPredicted RBP13.43□□□□□ -0.26
CLIP3-204ENST00000590559 PLVAPQ9BX97 442 aa13.43□□□□□ -0.26
CLIP3-204ENST00000590559 AGO4Q9HCK5 861 aaKnown RBP13.43□□□□□ -0.26
CLIP3-204ENST00000590559 FAM217BQ9NTX9 383 aaPredicted RBP13.43□□□□□ -0.26
CLIP3-204ENST00000590559 PRKAG3Q9UGI9 489 aa13.43□□□□□ -0.26
CLIP3-204ENST00000590559 BRPF3Q9ULD4 1205 aa13.43□□□□□ -0.26
CLIP3-204ENST00000590559 SMIM35A0A1B0GVV1 85 aa13.42□□□□□ -0.26
CLIP3-204ENST00000590559 FAM86C2PA6NEL3 165 aa13.42□□□□□ -0.26
CLIP3-204ENST00000590559 PRR33A8MZF0 331 aa13.42□□□□□ -0.26
CLIP3-204ENST00000590559 STXBP3O00186 592 aa13.42□□□□□ -0.26
CLIP3-204ENST00000590559 NCK2O43639 380 aa13.42□□□□□ -0.26
CLIP3-204ENST00000590559 FOSP01100 380 aaPredicted RBP13.42□□□□□ -0.26
CLIP3-204ENST00000590559 MMP1P03956 469 aa13.42□□□□□ -0.26
CLIP3-204ENST00000590559 SREBF1P36956 1147 aa13.42□□□□□ -0.26
CLIP3-204ENST00000590559 IGBP1P78318 339 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms