RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 CEP44Q9C0F1 390 aa9.65□□□□□ -0.86
SMAD4-209ENST00000589941 SUGCTQ9HAC7 445 aa9.65□□□□□ -0.86
SMAD4-209ENST00000589941 PRR33A8MZF0 331 aa9.64□□□□□ -0.87
SMAD4-209ENST00000589941 PI4K2BG5E9Z4 385 aa9.64□□□□□ -0.87
SMAD4-209ENST00000589941 KIAA0355O15063 1070 aa9.64□□□□□ -0.87
SMAD4-209ENST00000589941 ERC2O15083 957 aa9.64□□□□□ -0.87
SMAD4-209ENST00000589941 ZNF862O60290 1169 aa9.64□□□□□ -0.87
SMAD4-209ENST00000589941 LIG1P18858 919 aa9.64□□□□□ -0.87
SMAD4-209ENST00000589941 BMP6P22004 513 aa9.64□□□□□ -0.87
SMAD4-209ENST00000589941 NME2P22392 152 aa9.64□□□□□ -0.87
SMAD4-209ENST00000589941 ARNTP27540 789 aa9.64□□□□□ -0.87
SMAD4-209ENST00000589941 NEXNQ0ZGT2 675 aa9.64□□□□□ -0.87
SMAD4-209ENST00000589941 SPP2Q13103 211 aa9.64□□□□□ -0.87
SMAD4-209ENST00000589941 UBE4AQ14139 1066 aa9.64□□□□□ -0.87
SMAD4-209ENST00000589941 C12orf50Q8NA57 414 aaPredicted RBP9.64□□□□□ -0.87
SMAD4-209ENST00000589941 GRIN3AQ8TCU5 1115 aa9.64□□□□□ -0.87
SMAD4-209ENST00000589941 TBC1D22AQ8WUA7 517 aa9.64□□□□□ -0.87
SMAD4-209ENST00000589941 UIMC1Q96RL1 719 aa9.64□□□□□ -0.87
SMAD4-209ENST00000589941 CYP4F12Q9HCS2 524 aa9.64□□□□□ -0.87
SMAD4-209ENST00000589941 DDX4Q9NQI0 724 aaKnown RBP9.64□□□□□ -0.87
SMAD4-209ENST00000589941 CNNM1Q9NRU3 951 aa9.64□□□□□ -0.87
SMAD4-209ENST00000589941 COL11A1P12107 1806 aaPredicted RBP9.63□□□□□ -0.87
SMAD4-209ENST00000589941 SCN5AQ14524 2016 aa9.63□□□□□ -0.87
SMAD4-209ENST00000589941 MAST3O60307 1309 aa9.63□□□□□ -0.87
SMAD4-209ENST00000589941 KBTBD13C9JR72 458 aa9.63□□□□□ -0.87
SMAD4-209ENST00000589941 DYRK3O43781 588 aa9.63□□□□□ -0.87
SMAD4-209ENST00000589941 SORBS3O60504 671 aa9.63□□□□□ -0.87
SMAD4-209ENST00000589941 CTNND1O60716 968 aaKnown RBP9.63□□□□□ -0.87
SMAD4-209ENST00000589941 PQBP1O60828 265 aaKnown RBP9.63□□□□□ -0.87
SMAD4-209ENST00000589941 ZNF853P0CG23 659 aa9.63□□□□□ -0.87
SMAD4-209ENST00000589941 RAG1P15918 1043 aa9.63□□□□□ -0.87
SMAD4-209ENST00000589941 ZNF16P17020 682 aaPredicted RBP9.63□□□□□ -0.87
SMAD4-209ENST00000589941 ITGB7P26010 798 aa9.63□□□□□ -0.87
SMAD4-209ENST00000589941 PRDX5P30044 214 aa9.63□□□□□ -0.87
SMAD4-209ENST00000589941 HERVK_113P62684 666 aa9.63□□□□□ -0.87
SMAD4-209ENST00000589941 ERVK-24P63145 666 aa9.63□□□□□ -0.87
SMAD4-209ENST00000589941 SHROOM1Q2M3G4 852 aaPredicted RBP9.63□□□□□ -0.87
SMAD4-209ENST00000589941 LMBR1LQ6UX01 489 aa9.63□□□□□ -0.87
SMAD4-209ENST00000589941 LDHAL6AQ6ZMR3 332 aa9.63□□□□□ -0.87
SMAD4-209ENST00000589941 TSPYL6Q8N831 410 aa9.63□□□□□ -0.87
SMAD4-209ENST00000589941 NPLOC4Q8TAT6 608 aa9.63□□□□□ -0.87
SMAD4-209ENST00000589941 PAGR1Q9BTK6 254 aa9.63□□□□□ -0.87
SMAD4-209ENST00000589941 WDR18Q9BV38 432 aa9.63□□□□□ -0.87
SMAD4-209ENST00000589941 RBPJLQ9UBG7 517 aa9.63□□□□□ -0.87
SMAD4-209ENST00000589941 LRRFIP2Q9Y608 721 aaKnown RBP9.63□□□□□ -0.87
SMAD4-209ENST00000589941 ZFHX4Q86UP3 3567 aa9.63□□□□□ -0.87
SMAD4-209ENST00000589941 ATG2AQ2TAZ0 1938 aa9.62□□□□□ -0.87
SMAD4-209ENST00000589941 EPOPA6NHQ4 379 aa9.62□□□□□ -0.87
SMAD4-209ENST00000589941 RFXAPO00287 272 aa9.62□□□□□ -0.87
SMAD4-209ENST00000589941 SART1O43290 800 aaKnown RBP9.62□□□□□ -0.87
SMAD4-209ENST00000589941 MYOGP15173 224 aa9.62□□□□□ -0.87
SMAD4-209ENST00000589941 MAPK4P31152 587 aa9.62□□□□□ -0.87
SMAD4-209ENST00000589941 ZNF252P-AS1Q0IIN9 211 aa9.62□□□□□ -0.87
SMAD4-209ENST00000589941 FAM47AQ5JRC9 791 aa9.62□□□□□ -0.87
SMAD4-209ENST00000589941 TMEM240Q5SV17 173 aa9.62□□□□□ -0.87
SMAD4-209ENST00000589941 PRR23CQ6ZRP0 262 aa9.62□□□□□ -0.87
SMAD4-209ENST00000589941 PLEKHH3Q7Z736 793 aa9.62□□□□□ -0.87
SMAD4-209ENST00000589941 GPRC5AQ8NFJ5 357 aa9.62□□□□□ -0.87
SMAD4-209ENST00000589941 KCNB2Q92953 911 aa9.62□□□□□ -0.87
SMAD4-209ENST00000589941 UTP4Q969X6 686 aaKnown RBP9.62□□□□□ -0.87
SMAD4-209ENST00000589941 MRIQ9BWK5 157 aa9.62□□□□□ -0.87
SMAD4-209ENST00000589941 USP40Q9NVE5 1235 aa9.62□□□□□ -0.87
SMAD4-209ENST00000589941 VTI1BQ9UEU0 232 aa9.62□□□□□ -0.87
SMAD4-209ENST00000589941 CACNA1BQ00975 2339 aa9.61□□□□□ -0.87
SMAD4-209ENST00000589941 FRAT2O75474 233 aaPredicted RBP9.61□□□□□ -0.87
SMAD4-209ENST00000589941 CNMDO75829 334 aa9.61□□□□□ -0.87
SMAD4-209ENST00000589941 H2AFB1P0C5Y9 115 aa9.61□□□□□ -0.87
SMAD4-209ENST00000589941 H2AFB2P0C5Z0 115 aa9.61□□□□□ -0.87
SMAD4-209ENST00000589941 ACRP10323 421 aa9.61□□□□□ -0.87
SMAD4-209ENST00000589941 ADH5P11766 374 aa9.61□□□□□ -0.87
SMAD4-209ENST00000589941 IRX3P78415 501 aaPredicted RBP9.61□□□□□ -0.87
SMAD4-209ENST00000589941 SOX4Q06945 474 aaPredicted RBP9.61□□□□□ -0.87
SMAD4-209ENST00000589941 LRRC41Q15345 812 aa9.61□□□□□ -0.87
SMAD4-209ENST00000589941 AAK1Q2M2I8 961 aa9.61□□□□□ -0.87
SMAD4-209ENST00000589941 MFSD14CQ5VZR4 134 aa9.61□□□□□ -0.87
SMAD4-209ENST00000589941 MYRFLQ96LU7 910 aa9.61□□□□□ -0.87
SMAD4-209ENST00000589941 CBX8Q9HC52 389 aa9.61□□□□□ -0.87
SMAD4-209ENST00000589941 MRS2Q9HD23 443 aa9.61□□□□□ -0.87
SMAD4-209ENST00000589941 RAD18Q9NS91 495 aa9.61□□□□□ -0.87
SMAD4-209ENST00000589941 DMDP11532 3685 aa9.61□□□□□ -0.87
SMAD4-209ENST00000589941 K7ELQ4 463 aaPredicted RBP9.6□□□□□ -0.87
SMAD4-209ENST00000589941 MSCO60682 206 aa9.6□□□□□ -0.87
SMAD4-209ENST00000589941 RABGGTBP53611 331 aa9.6□□□□□ -0.87
SMAD4-209ENST00000589941 JAG1P78504 1218 aa9.6□□□□□ -0.87
SMAD4-209ENST00000589941 UVSSAQ2YD98 709 aa9.6□□□□□ -0.87
SMAD4-209ENST00000589941 CCDC184Q52MB2 194 aa9.6□□□□□ -0.87
SMAD4-209ENST00000589941 TAF7LQ5H9L4 462 aa9.6□□□□□ -0.87
SMAD4-209ENST00000589941 PCNX4Q63HM2 1172 aa9.6□□□□□ -0.87
SMAD4-209ENST00000589941 SV2BQ7L1I2 683 aa9.6□□□□□ -0.87
SMAD4-209ENST00000589941 VPS37DQ86XT2 251 aa9.6□□□□□ -0.87
SMAD4-209ENST00000589941 VGLL2Q8N8G2 317 aa9.6□□□□□ -0.87
SMAD4-209ENST00000589941 C2CD4AQ8NCU7 369 aaPredicted RBP9.6□□□□□ -0.87
SMAD4-209ENST00000589941 RGS22Q8NE09 1264 aa9.6□□□□□ -0.87
SMAD4-209ENST00000589941 PNNQ9H307 717 aaKnown RBP9.6□□□□□ -0.87
SMAD4-209ENST00000589941 PPP1R9AQ9ULJ8 1098 aa9.6□□□□□ -0.87
SMAD4-209ENST00000589941 TACC3Q9Y6A5 838 aa9.6□□□□□ -0.87
SMAD4-209ENST00000589941 MTCH2Q9Y6C9 303 aa9.6□□□□□ -0.87
SMAD4-209ENST00000589941 MCM3APO60318 1980 aa9.6□□□□□ -0.87
SMAD4-209ENST00000589941 VPS13AQ96RL7 3174 aa9.59□□□□□ -0.87
SMAD4-209ENST00000589941 ADAM23O75077 832 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms