RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 DYMQ7RTS9 669 aa11.73□□□□□ -0.53
ZNF540-208ENST00000589857 CTAGE6Q86UF2 777 aa11.73□□□□□ -0.53
ZNF540-208ENST00000589857 GPBP1Q86WP2 473 aa11.73□□□□□ -0.53
ZNF540-208ENST00000589857 CTAGE4Q8IX94 777 aa11.73□□□□□ -0.53
ZNF540-208ENST00000589857 ZBED3Q96IU2 234 aaPredicted RBP11.73□□□□□ -0.53
ZNF540-208ENST00000589857 CCDC42Q96M95 316 aa11.73□□□□□ -0.53
ZNF540-208ENST00000589857 SLF1Q9BQI6 1058 aa11.73□□□□□ -0.53
ZNF540-208ENST00000589857 GREB1LQ9C091 1923 aaPredicted RBP11.73□□□□□ -0.53
ZNF540-208ENST00000589857 TTYH3Q9C0H2 523 aa11.73□□□□□ -0.53
ZNF540-208ENST00000589857 SEMA6BQ9H3T3 888 aa11.73□□□□□ -0.53
ZNF540-208ENST00000589857 R3HDMLQ9H3Y0 253 aa11.73□□□□□ -0.53
ZNF540-208ENST00000589857 GINM1Q9NU53 330 aa11.73□□□□□ -0.53
ZNF540-208ENST00000589857 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.73□□□□□ -0.53
ZNF540-208ENST00000589857 MRPL11Q9Y3B7 192 aaKnown RBP11.73□□□□□ -0.53
ZNF540-208ENST00000589857 CSADQ9Y600 493 aa11.73□□□□□ -0.53
ZNF540-208ENST00000589857 V9GYY5 206 aaPredicted RBP11.73□□□□□ -0.53
ZNF540-208ENST00000589857 SPDYE2BA6NHP3 402 aa11.72□□□□□ -0.53
ZNF540-208ENST00000589857 CETN3O15182 167 aa11.72□□□□□ -0.53
ZNF540-208ENST00000589857 TBC1D12O60347 775 aa11.72□□□□□ -0.53
ZNF540-208ENST00000589857 COBLO75128 1261 aa11.72□□□□□ -0.53
ZNF540-208ENST00000589857 GH2P01242 217 aa11.72□□□□□ -0.53
ZNF540-208ENST00000589857 SSBP05455 408 aaKnown RBP eCLIP11.72□□□□□ -0.53
ZNF540-208ENST00000589857 SPDYE6P0CI01 402 aa11.72□□□□□ -0.53
ZNF540-208ENST00000589857 EN2P19622 333 aaPredicted RBP11.72□□□□□ -0.53
ZNF540-208ENST00000589857 RPA1P27694 616 aa11.72□□□□□ -0.53
ZNF540-208ENST00000589857 MARSP56192 900 aaKnown RBP11.72□□□□□ -0.53
ZNF540-208ENST00000589857 SETQ01105 290 aaPredicted RBP11.72□□□□□ -0.53
ZNF540-208ENST00000589857 KIF5AQ12840 1032 aa11.72□□□□□ -0.53
ZNF540-208ENST00000589857 GPS2Q13227 327 aa11.72□□□□□ -0.53
ZNF540-208ENST00000589857 TAF1CQ15572 869 aaPredicted RBP11.72□□□□□ -0.53
ZNF540-208ENST00000589857 MIIPQ5JXC2 388 aa11.72□□□□□ -0.53
ZNF540-208ENST00000589857 TEX35Q5T0J7 233 aa11.72□□□□□ -0.53
ZNF540-208ENST00000589857 CCDC70Q6NSX1 233 aa11.72□□□□□ -0.53
ZNF540-208ENST00000589857 RSRC2Q7L4I2 434 aaKnown RBP11.72□□□□□ -0.53
ZNF540-208ENST00000589857 SLC35F6Q8N357 371 aa11.72□□□□□ -0.53
ZNF540-208ENST00000589857 ACRBPQ8NEB7 543 aa11.72□□□□□ -0.53
ZNF540-208ENST00000589857 LRRC15Q8TF66 581 aa11.72□□□□□ -0.53
ZNF540-208ENST00000589857 SYN2Q92777 582 aaPredicted RBP11.72□□□□□ -0.53
ZNF540-208ENST00000589857 JAKMIP2Q96AA8 810 aa11.72□□□□□ -0.53
ZNF540-208ENST00000589857 DNAJC19Q96DA6 116 aa11.72□□□□□ -0.53
ZNF540-208ENST00000589857 ALS2CR12Q96Q35 445 aa11.72□□□□□ -0.53
ZNF540-208ENST00000589857 POLR3CQ9BUI4 534 aaPredicted RBP11.72□□□□□ -0.53
ZNF540-208ENST00000589857 DEF6Q9H4E7 631 aa11.72□□□□□ -0.53
ZNF540-208ENST00000589857 TDRD3Q9H7E2 651 aaKnown RBP11.72□□□□□ -0.53
ZNF540-208ENST00000589857 ARFGAP3Q9NP61 516 aa11.72□□□□□ -0.53
ZNF540-208ENST00000589857 KIAA1024Q9UPX6 916 aa11.72□□□□□ -0.53
ZNF540-208ENST00000589857 UBE4BO95155 1302 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 FRMD3A2A2Y4 597 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 USP17L15C9J2P7 530 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 USP17L13C9JLJ4 530 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 USP17L11C9JVI0 530 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 USP17L18D6R9N7 530 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 USP17L22D6RA61 530 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 USP17L17D6RBQ6 530 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 USP17L19D6RCP7 530 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 USP17L20D6RJB6 530 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 GCOM1H8Y6P7 765 aaPredicted RBP11.71□□□□□ -0.53
ZNF540-208ENST00000589857 MEIS2O14770 477 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 CALUO43852 315 aaPredicted RBP11.71□□□□□ -0.53
ZNF540-208ENST00000589857 TBCAO75347 108 aaKnown RBP11.71□□□□□ -0.53
ZNF540-208ENST00000589857 TACC1O75410 805 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 POLR2MP0CAP2 368 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 RPL13P26373 211 aaKnown RBP11.71□□□□□ -0.53
ZNF540-208ENST00000589857 HOXD10P28358 340 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 VAV2P52735 878 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 USP17L24Q0WX57 530 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 RASA3Q14644 834 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 PRR16Q569H4 304 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 HERC4Q5GLZ8 1057 aaPredicted RBP11.71□□□□□ -0.53
ZNF540-208ENST00000589857 CCDC122Q5T0U0 273 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 USP17L6PQ6QN14 398 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 LRRC55Q6ZSA7 311 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 SH3BP5LQ7L8J4 393 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 CACNA2D4Q7Z3S7 1137 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 FAM83AQ86UY5 434 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 FMNL3Q8IVF7 1028 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 ZFPM1Q8IX07 1006 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 SAMD3Q8N6K7 520 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 ETNPPLQ8TBG4 499 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 NEK9Q8TD19 979 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 CRYGNQ8WXF5 182 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 ZNF333Q96JL9 665 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 TANGO6Q9C0B7 1094 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 ACBD3Q9H3P7 528 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 NHEJ1Q9H9Q4 299 aaPredicted RBP11.71□□□□□ -0.53
ZNF540-208ENST00000589857 TUFT1Q9NNX1 390 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 ZCCHC17Q9NP64 241 aaKnown RBP11.71□□□□□ -0.53
ZNF540-208ENST00000589857 CEP72Q9P209 647 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 FEM1BQ9UK73 627 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 MYO6Q9UM54 1294 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 PLAGL2Q9UPG8 496 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 TMX2Q9Y320 296 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 DAAM1Q9Y4D1 1078 aa11.71□□□□□ -0.53
ZNF540-208ENST00000589857 PSME4Q14997 1843 aa11.7□□□□□ -0.54
ZNF540-208ENST00000589857 SSU72P8A0A1W2PR75 194 aa11.7□□□□□ -0.54
ZNF540-208ENST00000589857 CLRN2A0PK11 232 aa11.7□□□□□ -0.54
ZNF540-208ENST00000589857 CCDC151A5D8V7 595 aa11.7□□□□□ -0.54
ZNF540-208ENST00000589857 EDIL3O43854 480 aa11.7□□□□□ -0.54
ZNF540-208ENST00000589857 USP2O75604 605 aaPredicted RBP11.7□□□□□ -0.54
ZNF540-208ENST00000589857 GDF11O95390 407 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms