RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	OXSM	Q9NWU1	459 aa		6.13	□□□□□ -1.43
SS18-223	ENST00000583595	ZNF281	Q9Y2X9	895 aa		6.13	□□□□□ -1.43
SS18-223	ENST00000583595	NPFFR2	Q9Y5X5	522 aa		6.13	□□□□□ -1.43
SS18-223	ENST00000583595	HMGB1P1	B2RPK0	211 aa	Predicted RBP	6.12	□□□□□ -1.43
SS18-223	ENST00000583595	STXBP3	O00186	592 aa		6.12	□□□□□ -1.43
SS18-223	ENST00000583595	TBX3	O15119	743 aa		6.12	□□□□□ -1.43
SS18-223	ENST00000583595	H2AFY	O75367	372 aa	Known RBP	6.12	□□□□□ -1.43
SS18-223	ENST00000583595	PRAMEF1	O95521	474 aa		6.12	□□□□□ -1.43
SS18-223	ENST00000583595	CFB	P00751	764 aa		6.12	□□□□□ -1.43
SS18-223	ENST00000583595	MYB	P10242	640 aa		6.12	□□□□□ -1.43
SS18-223	ENST00000583595	PHKG2	P15735	406 aa		6.12	□□□□□ -1.43
SS18-223	ENST00000583595	NAT1	P18440	290 aa		6.12	□□□□□ -1.43
SS18-223	ENST00000583595	PCBP3	P57721	371 aa	Known RBP	6.12	□□□□□ -1.43
SS18-223	ENST00000583595	SESN3	P58005	492 aa		6.12	□□□□□ -1.43
SS18-223	ENST00000583595	RBM10	P98175	930 aa	Known RBP	6.12	□□□□□ -1.43
SS18-223	ENST00000583595	CHRNE	Q04844	493 aa		6.12	□□□□□ -1.43
SS18-223	ENST00000583595	FOXD4	Q12950	439 aa	Predicted RBP	6.12	□□□□□ -1.43
SS18-223	ENST00000583595	PAK1	Q13153	545 aa		6.12	□□□□□ -1.43
SS18-223	ENST00000583595	LRRC32	Q14392	662 aa		6.12	□□□□□ -1.43
SS18-223	ENST00000583595	WASHC2A	Q641Q2	1341 aa		6.12	□□□□□ -1.43
SS18-223	ENST00000583595	CYB5RL	Q6IPT4	315 aa		6.12	□□□□□ -1.43
SS18-223	ENST00000583595	LBX2	Q6XYB7	198 aa		6.12	□□□□□ -1.43
SS18-223	ENST00000583595	WAPL	Q7Z5K2	1190 aa		6.12	□□□□□ -1.43
SS18-223	ENST00000583595	ANKS4B	Q8N8V4	417 aa		6.12	□□□□□ -1.43
SS18-223	ENST00000583595	CHST14	Q8NCH0	376 aa		6.12	□□□□□ -1.43
SS18-223	ENST00000583595	MYRIP	Q8NFW9	859 aa		6.12	□□□□□ -1.43
SS18-223	ENST00000583595	NPLOC4	Q8TAT6	608 aa		6.12	□□□□□ -1.43
SS18-223	ENST00000583595	DIO2	Q92813	273 aa		6.12	□□□□□ -1.43
SS18-223	ENST00000583595	CLSPN	Q9HAW4	1339 aa		6.12	□□□□□ -1.43
SS18-223	ENST00000583595	TCFL5	Q9UL49	500 aa		6.12	□□□□□ -1.43
SS18-223	ENST00000583595	C2orf71	A6NGG8	1288 aa		6.11	□□□□□ -1.43
SS18-223	ENST00000583595	RASSF10	A6NK89	507 aa		6.11	□□□□□ -1.43
SS18-223	ENST00000583595	GOLGA8A	A7E2F4	631 aa		6.11	□□□□□ -1.43
SS18-223	ENST00000583595	GOLGA8B	A8MQT2	603 aa		6.11	□□□□□ -1.43
SS18-223	ENST00000583595	NPHP1	O15259	732 aa		6.11	□□□□□ -1.43
SS18-223	ENST00000583595	MEFV	O15553	781 aa	Predicted RBP	6.11	□□□□□ -1.43
SS18-223	ENST00000583595	XPOT	O43592	962 aa	Known RBP	6.11	□□□□□ -1.43
SS18-223	ENST00000583595	SIGLEC6	O43699	453 aa		6.11	□□□□□ -1.43
SS18-223	ENST00000583595	AP1G1	O43747	822 aa		6.11	□□□□□ -1.43
SS18-223	ENST00000583595	PSPN	O60542	156 aa		6.11	□□□□□ -1.43
SS18-223	ENST00000583595	TSPAN15	O95858	294 aa		6.11	□□□□□ -1.43
SS18-223	ENST00000583595	SYP	P08247	313 aa		6.11	□□□□□ -1.43
SS18-223	ENST00000583595	MYL3	P08590	195 aa		6.11	□□□□□ -1.43
SS18-223	ENST00000583595	TRAPPC10	P48553	1259 aa		6.11	□□□□□ -1.43
SS18-223	ENST00000583595	POU4F1	Q01851	419 aa		6.11	□□□□□ -1.43
SS18-223	ENST00000583595	DDB1	Q16531	1140 aa		6.11	□□□□□ -1.43
SS18-223	ENST00000583595	GPR158	Q5T848	1215 aa		6.11	□□□□□ -1.43
SS18-223	ENST00000583595	CREB3L3	Q68CJ9	461 aa		6.11	□□□□□ -1.43
SS18-223	ENST00000583595	CLEC4G	Q6UXB4	293 aa		6.11	□□□□□ -1.43
SS18-223	ENST00000583595	RSPO2	Q6UXX9	243 aa	Predicted RBP	6.11	□□□□□ -1.43
SS18-223	ENST00000583595	LINC00116	Q8NCU8	138 aa		6.11	□□□□□ -1.43
SS18-223	ENST00000583595	SLC35G2	Q8TBE7	412 aa		6.11	□□□□□ -1.43
SS18-223	ENST00000583595	FCRL3	Q96P31	734 aa	Predicted RBP	6.11	□□□□□ -1.43
SS18-223	ENST00000583595	ZFYVE21	Q9BQ24	234 aa		6.11	□□□□□ -1.43
SS18-223	ENST00000583595	G6PC3	Q9BUM1	346 aa		6.11	□□□□□ -1.43
SS18-223	ENST00000583595	NAA15	Q9BXJ9	866 aa	Known RBP	6.11	□□□□□ -1.43
SS18-223	ENST00000583595	KRTAP4-9	Q9BYQ8	210 aa		6.11	□□□□□ -1.43
SS18-223	ENST00000583595	CELF4	Q9BZC1	486 aa	Known RBP	6.11	□□□□□ -1.43
SS18-223	ENST00000583595	MS4A5	Q9H3V2	200 aa		6.11	□□□□□ -1.43
SS18-223	ENST00000583595	DDX21	Q9NR30	783 aa	Known RBP eCLIP	6.11	□□□□□ -1.43
SS18-223	ENST00000583595	GPR27	Q9NS67	375 aa		6.11	□□□□□ -1.43
SS18-223	ENST00000583595	GPR160	Q9UJ42	338 aa		6.11	□□□□□ -1.43
SS18-223	ENST00000583595	PHTF1	Q9UMS5	762 aa		6.11	□□□□□ -1.43
SS18-223	ENST00000583595	DNM3	Q9UQ16	869 aa		6.11	□□□□□ -1.43
SS18-223	ENST00000583595	CCDC66	A2RUB6	948 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	KLHL33	A6NCF5	533 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	ERC2	O15083	957 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	PMM2	O15305	246 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	CTNND1	O60716	968 aa	Known RBP	6.1	□□□□□ -1.43
SS18-223	ENST00000583595	FKTN	O75072	461 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	TCEA3	O75764	348 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	ZRANB2	O95218	330 aa	Known RBP eCLIP	6.1	□□□□□ -1.43
SS18-223	ENST00000583595	KRT1	P04264	644 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	CD3E	P07766	207 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	C1QTNF9	P0C862	333 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	CTSK	P43235	329 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	GPR3	P46089	330 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	ZNF280A	P59817	542 aa	Predicted RBP	6.1	□□□□□ -1.43
SS18-223	ENST00000583595	OCRL	Q01968	901 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	RAPGEF1	Q13905	1077 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	SNX17	Q15036	470 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	CLUL1	Q15846	466 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	EFCAB2	Q5VUJ9	269 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	B3GNT9	Q6UX72	402 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	NME8	Q8N427	588 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	CISD2	Q8N5K1	135 aa	Known RBP	6.1	□□□□□ -1.43
SS18-223	ENST00000583595	C2orf69	Q8N8R5	385 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	6.1	□□□□□ -1.43
SS18-223	ENST00000583595	RUNDC1	Q96C34	613 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	AIFM3	Q96NN9	605 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	KRTAP4-2	Q9BYR5	136 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	SLC6A17	Q9H1V8	727 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	IPPK	Q9H8X2	491 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	CASS4	Q9NQ75	786 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	TOPORS	Q9NS56	1045 aa	Predicted RBP	6.1	□□□□□ -1.43
SS18-223	ENST00000583595	CHST7	Q9NS84	486 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	CLEC1B	Q9P126	229 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	ZNF652	Q9Y2D9	606 aa		6.1	□□□□□ -1.43
SS18-223	ENST00000583595	YBX2	Q9Y2T7	364 aa	Known RBP	6.1	□□□□□ -1.43
SS18-223	ENST00000583595	TMEM82	A0PJX8	343 aa		6.09	□□□□□ -1.43

Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms