RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 hCG_1642624A0A1W2PR95 340 aa16.54■□□□□ 0.24
SMARCE1-216ENST00000580419 LINC01553A4QN01 128 aa16.54■□□□□ 0.24
SMARCE1-216ENST00000580419 GNA11P29992 359 aa16.54■□□□□ 0.24
SMARCE1-216ENST00000580419 METAP2P50579 478 aaKnown RBP eCLIP16.54■□□□□ 0.24
SMARCE1-216ENST00000580419 MGAT3Q09327 533 aa16.54■□□□□ 0.24
SMARCE1-216ENST00000580419 GRB10Q13322 594 aa16.54■□□□□ 0.24
SMARCE1-216ENST00000580419 GRIK4Q16099 956 aa16.54■□□□□ 0.24
SMARCE1-216ENST00000580419 MARCH8Q5T0T0 291 aa16.54■□□□□ 0.24
SMARCE1-216ENST00000580419 UTP14CQ5TAP6 766 aaKnown RBP16.54■□□□□ 0.24
SMARCE1-216ENST00000580419 NME8Q8N427 588 aa16.54■□□□□ 0.24
SMARCE1-216ENST00000580419 ARNTL2Q8WYA1 636 aa16.54■□□□□ 0.24
SMARCE1-216ENST00000580419 GLG1Q92896 1179 aa16.54■□□□□ 0.24
SMARCE1-216ENST00000580419 RNF26Q9BY78 433 aaPredicted RBP16.54■□□□□ 0.24
SMARCE1-216ENST00000580419 IFIH1Q9BYX4 1025 aaKnown RBP16.54■□□□□ 0.24
SMARCE1-216ENST00000580419 AZI2Q9H6S1 392 aa16.54■□□□□ 0.24
SMARCE1-216ENST00000580419 AGO4Q9HCK5 861 aaKnown RBP16.54■□□□□ 0.24
SMARCE1-216ENST00000580419 SNX14Q9Y5W7 946 aa16.54■□□□□ 0.24
SMARCE1-216ENST00000580419 WDR81Q562E7 1941 aa16.53■□□□□ 0.24
SMARCE1-216ENST00000580419 EPOPA6NHQ4 379 aa16.53■□□□□ 0.24
SMARCE1-216ENST00000580419 ARHGEF15O94989 841 aa16.53■□□□□ 0.24
SMARCE1-216ENST00000580419 CHRNA1P02708 482 aa16.53■□□□□ 0.24
SMARCE1-216ENST00000580419 RPS6KB1P23443 525 aa16.53■□□□□ 0.24
SMARCE1-216ENST00000580419 ADD1P35611 737 aaKnown RBP16.53■□□□□ 0.24
SMARCE1-216ENST00000580419 FGD1P98174 961 aa16.53■□□□□ 0.24
SMARCE1-216ENST00000580419 SETQ01105 290 aaPredicted RBP16.53■□□□□ 0.24
SMARCE1-216ENST00000580419 BICD2Q8TD16 824 aa16.53■□□□□ 0.24
SMARCE1-216ENST00000580419 PCYT2Q99447 389 aa16.53■□□□□ 0.24
SMARCE1-216ENST00000580419 TM6SF1Q9BZW5 370 aa16.53■□□□□ 0.24
SMARCE1-216ENST00000580419 C6orf50Q9HD87 102 aa16.53■□□□□ 0.24
SMARCE1-216ENST00000580419 SH3GLB2Q9NR46 395 aa16.53■□□□□ 0.24
SMARCE1-216ENST00000580419 TELO2Q9Y4R8 837 aa16.53■□□□□ 0.24
SMARCE1-216ENST00000580419 COL4A4P53420 1690 aaPredicted RBP16.53■□□□□ 0.24
SMARCE1-216ENST00000580419 LCHNA4D1U4 455 aa16.52■□□□□ 0.24
SMARCE1-216ENST00000580419 IFNAR1P17181 557 aa16.52■□□□□ 0.24
SMARCE1-216ENST00000580419 CIITAP33076 1130 aa16.52■□□□□ 0.24
SMARCE1-216ENST00000580419 STAT5BP51692 787 aa16.52■□□□□ 0.24
SMARCE1-216ENST00000580419 ACTR2P61160 394 aa16.52■□□□□ 0.24
SMARCE1-216ENST00000580419 NTRK3Q16288 839 aa16.52■□□□□ 0.24
SMARCE1-216ENST00000580419 IER5Q5VY09 327 aa16.52■□□□□ 0.24
SMARCE1-216ENST00000580419 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.52■□□□□ 0.242e-7■■□□□ 13.5
SMARCE1-216ENST00000580419 RAB11FIP4Q86YS3 637 aa16.52■□□□□ 0.24
SMARCE1-216ENST00000580419 ZNF710Q8N1W2 664 aa16.52■□□□□ 0.24
SMARCE1-216ENST00000580419 TCEANC2Q96MN5 208 aa16.52■□□□□ 0.24
SMARCE1-216ENST00000580419 JAKMIP1Q96N16 626 aaKnown RBP16.52■□□□□ 0.24
SMARCE1-216ENST00000580419 FTHL17Q9BXU8 183 aa16.52■□□□□ 0.24
SMARCE1-216ENST00000580419 SUGCTQ9HAC7 445 aa16.52■□□□□ 0.24
SMARCE1-216ENST00000580419 TBC1D22BQ9NU19 505 aa16.52■□□□□ 0.24
SMARCE1-216ENST00000580419 PCDHA2Q9Y5H9 948 aa16.52■□□□□ 0.24
SMARCE1-216ENST00000580419 NLRC5Q86WI3 1866 aa16.52■□□□□ 0.23
SMARCE1-216ENST00000580419 COL1A2P08123 1366 aa16.51■□□□□ 0.23
SMARCE1-216ENST00000580419 IGLV3-22A0A075B6J6 115 aa16.51■□□□□ 0.23
SMARCE1-216ENST00000580419 SMIM35A0A1B0GVV1 85 aa16.51■□□□□ 0.23
SMARCE1-216ENST00000580419 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.51■□□□□ 0.23
SMARCE1-216ENST00000580419 TNFRSF10AO00220 468 aa16.51■□□□□ 0.23
SMARCE1-216ENST00000580419 BMP1P13497 986 aa16.51■□□□□ 0.23
SMARCE1-216ENST00000580419 INSRRP14616 1297 aa16.51■□□□□ 0.23
SMARCE1-216ENST00000580419 SP4Q02446 784 aa16.51■□□□□ 0.23
SMARCE1-216ENST00000580419 ITGB3BPQ13352 177 aaPredicted RBP16.51■□□□□ 0.23
SMARCE1-216ENST00000580419 PKN1Q16512 942 aa16.51■□□□□ 0.23
SMARCE1-216ENST00000580419 FBXO47Q5MNV8 452 aa16.51■□□□□ 0.23
SMARCE1-216ENST00000580419 ABHD15Q6UXT9 468 aa16.51■□□□□ 0.23
SMARCE1-216ENST00000580419 TSHZ1Q6ZSZ6 1077 aa16.51■□□□□ 0.23
SMARCE1-216ENST00000580419 Q6ZUG5 572 aa16.51■□□□□ 0.23
SMARCE1-216ENST00000580419 MYOCDQ8IZQ8 938 aa16.51■□□□□ 0.23
SMARCE1-216ENST00000580419 REXO1Q8N1G1 1221 aaKnown RBP16.51■□□□□ 0.23
SMARCE1-216ENST00000580419 CCDC148Q8NFR7 591 aa16.51■□□□□ 0.23
SMARCE1-216ENST00000580419 CYP2W1Q8TAV3 490 aa16.51■□□□□ 0.23
SMARCE1-216ENST00000580419 BRF1Q92994 677 aa16.51■□□□□ 0.23
SMARCE1-216ENST00000580419 PRDM6Q9NQX0 595 aa16.51■□□□□ 0.23
SMARCE1-216ENST00000580419 RWDD3Q9Y3V2 267 aa16.51■□□□□ 0.23
SMARCE1-216ENST00000580419 LOXHD1Q8IVV2 1947 aa16.51■□□□□ 0.23
SMARCE1-216ENST00000580419 EVPLQ92817 2033 aa16.5■□□□□ 0.23
SMARCE1-216ENST00000580419 C5orf67F2Z3F1 127 aa16.5■□□□□ 0.23
SMARCE1-216ENST00000580419 DHX15O43143 795 aaKnown RBP16.5■□□□□ 0.23
SMARCE1-216ENST00000580419 HBP1O60381 514 aa16.5■□□□□ 0.23
SMARCE1-216ENST00000580419 ARP10275 920 aa16.5■□□□□ 0.23
SMARCE1-216ENST00000580419 MRPS6P82932 125 aaKnown RBP16.5■□□□□ 0.23
SMARCE1-216ENST00000580419 LPIN1Q14693 890 aa16.5■□□□□ 0.23
SMARCE1-216ENST00000580419 CCDC85BQ15834 202 aaPredicted RBP16.5■□□□□ 0.23
SMARCE1-216ENST00000580419 FAM160B1Q5W0V3 765 aa16.5■□□□□ 0.23
SMARCE1-216ENST00000580419 ZNF746Q6NUN9 644 aaPredicted RBP16.5■□□□□ 0.23
SMARCE1-216ENST00000580419 SKAP1Q86WV1 359 aa16.5■□□□□ 0.23
SMARCE1-216ENST00000580419 SMAP1Q8IYB5 467 aaPredicted RBP16.5■□□□□ 0.23
SMARCE1-216ENST00000580419 PPM1EQ8WY54 764 aa16.5■□□□□ 0.23
SMARCE1-216ENST00000580419 C22orf23Q9BZE7 217 aa16.5■□□□□ 0.23
SMARCE1-216ENST00000580419 ZSWIM6Q9HCJ5 1215 aa16.5■□□□□ 0.23
SMARCE1-216ENST00000580419 RNF216Q9NWF9 866 aaPredicted RBP16.5■□□□□ 0.23
SMARCE1-216ENST00000580419 MYO7AQ13402 2215 aa16.5■□□□□ 0.23
SMARCE1-216ENST00000580419 POTEB3A0JP26 581 aa16.49■□□□□ 0.23
SMARCE1-216ENST00000580419 FAM86B1E9PN63 330 aa16.49■□□□□ 0.23
SMARCE1-216ENST00000580419 IPO5O00410 1097 aaKnown RBP16.49■□□□□ 0.23
SMARCE1-216ENST00000580419 RB1P06400 928 aa16.49■□□□□ 0.23
SMARCE1-216ENST00000580419 CTSHP09668 335 aa16.49■□□□□ 0.23
SMARCE1-216ENST00000580419 FAM86B2P0C5J1 330 aa16.49■□□□□ 0.23
SMARCE1-216ENST00000580419 ZNF76P36508 570 aa16.49■□□□□ 0.23
SMARCE1-216ENST00000580419 USP11P51784 963 aa16.49■□□□□ 0.23
SMARCE1-216ENST00000580419 AKAP17AQ02040 695 aaKnown RBP16.49■□□□□ 0.23
SMARCE1-216ENST00000580419 APOBRQ0VD83 1088 aa16.49■□□□□ 0.23
SMARCE1-216ENST00000580419 PLCB4Q15147 1175 aa16.49■□□□□ 0.23
SMARCE1-216ENST00000580419 ERICH6BQ5W0A0 696 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms