RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 BCAS3Q9H6U6 928 aa12.02□□□□□ -0.48
SS18-213ENST00000579640 RGL1Q9NZL6 768 aa12.02□□□□□ -0.48
SS18-213ENST00000579640 SERTAD1Q9UHV2 236 aa12.02□□□□□ -0.48
SS18-213ENST00000579640 KIAA1024Q9UPX6 916 aa12.02□□□□□ -0.48
SS18-213ENST00000579640 CEP350Q5VT06 3117 aa12.02□□□□□ -0.48
SS18-213ENST00000579640 IGKV6D-21A0A0A0MT36 114 aa12.02□□□□□ -0.49
SS18-213ENST00000579640 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.02□□□□□ -0.49
SS18-213ENST00000579640 GSTTP1A0A1W2PQM5 241 aa12.02□□□□□ -0.49
SS18-213ENST00000579640 ELNP15502 786 aa12.02□□□□□ -0.49
SS18-213ENST00000579640 SP4Q02446 784 aa12.02□□□□□ -0.49
SS18-213ENST00000579640 CYP4A11Q02928 519 aa12.02□□□□□ -0.49
SS18-213ENST00000579640 CACNB2Q08289 660 aaPredicted RBP12.02□□□□□ -0.49
SS18-213ENST00000579640 CTTNQ14247 550 aaKnown RBP12.02□□□□□ -0.49
SS18-213ENST00000579640 NAALADL2Q58DX5 795 aa12.02□□□□□ -0.49
SS18-213ENST00000579640 FAM160B1Q5W0V3 765 aa12.02□□□□□ -0.49
SS18-213ENST00000579640 PDXDC2PQ6P474 469 aa12.02□□□□□ -0.49
SS18-213ENST00000579640 TPH2Q8IWU9 490 aa12.02□□□□□ -0.49
SS18-213ENST00000579640 C4orf19Q8IY42 314 aa12.02□□□□□ -0.49
SS18-213ENST00000579640 OR6J1Q8NGC5 347 aa12.02□□□□□ -0.49
SS18-213ENST00000579640 COPS5Q92905 334 aa12.02□□□□□ -0.49
SS18-213ENST00000579640 NACC1Q96RE7 527 aa12.02□□□□□ -0.49
SS18-213ENST00000579640 LRRC27Q9C0I9 530 aa12.02□□□□□ -0.49
SS18-213ENST00000579640 DNM3Q9UQ16 869 aa12.02□□□□□ -0.49
SS18-213ENST00000579640 GNEQ9Y223 722 aaKnown RBP12.02□□□□□ -0.49
SS18-213ENST00000579640 LOXHD1Q8IVV2 1947 aa12.01□□□□□ -0.49
SS18-213ENST00000579640 POTEFA5A3E0 1075 aa12.01□□□□□ -0.49
SS18-213ENST00000579640 BACH1O14867 736 aa12.01□□□□□ -0.49
SS18-213ENST00000579640 SEPT4O43236 478 aa12.01□□□□□ -0.49
SS18-213ENST00000579640 SORBS3O60504 671 aa12.01□□□□□ -0.49
SS18-213ENST00000579640 LETM1O95202 739 aaPredicted RBP12.01□□□□□ -0.49
SS18-213ENST00000579640 MYL1P05976 194 aa12.01□□□□□ -0.49
SS18-213ENST00000579640 HSPA8P11142 646 aaKnown RBP12.01□□□□□ -0.49
SS18-213ENST00000579640 XRCC6P12956 609 aaKnown RBP eCLIP12.01□□□□□ -0.49
SS18-213ENST00000579640 PRKAR2AP13861 404 aaKnown RBP12.01□□□□□ -0.49
SS18-213ENST00000579640 GRK4P32298 578 aa12.01□□□□□ -0.49
SS18-213ENST00000579640 ECM1Q16610 540 aa12.01□□□□□ -0.49
SS18-213ENST00000579640 HSDL1Q3SXM5 330 aa12.01□□□□□ -0.49
SS18-213ENST00000579640 MAP3K21Q5TCX8 1036 aa12.01□□□□□ -0.49
SS18-213ENST00000579640 POTEGQ6S5H5 508 aa12.01□□□□□ -0.49
SS18-213ENST00000579640 BANK1Q8NDB2 785 aa12.01□□□□□ -0.49
SS18-213ENST00000579640 TRPV1Q8NER1 839 aa12.01□□□□□ -0.49
SS18-213ENST00000579640 AFAP1L1Q8TED9 768 aa12.01□□□□□ -0.49
SS18-213ENST00000579640 LARP4BQ92615 738 aaKnown RBP12.01□□□□□ -0.49
SS18-213ENST00000579640 RAD54LQ92698 747 aa12.01□□□□□ -0.49
SS18-213ENST00000579640 PLIN2Q99541 437 aa12.01□□□□□ -0.49
SS18-213ENST00000579640 ANP32EQ9BTT0 268 aa12.01□□□□□ -0.49
SS18-213ENST00000579640 TNMDQ9H2S6 317 aa12.01□□□□□ -0.49
SS18-213ENST00000579640 AZI2Q9H6S1 392 aa12.01□□□□□ -0.49
SS18-213ENST00000579640 ZNF302Q9NR11 478 aa12.01□□□□□ -0.49
SS18-213ENST00000579640 TMEM63CQ9P1W3 806 aa12.01□□□□□ -0.49
SS18-213ENST00000579640 GABBR1Q9UBS5 961 aa12.01□□□□□ -0.49
SS18-213ENST00000579640 IGSF9BQ9UPX0 1349 aa12.01□□□□□ -0.49
SS18-213ENST00000579640 DUSP11O75319 330 aaKnown RBP12□□□□□ -0.49
SS18-213ENST00000579640 PPFIA4O75335 1185 aa12□□□□□ -0.49
SS18-213ENST00000579640 LGR5O75473 907 aa12□□□□□ -0.49
SS18-213ENST00000579640 EYA4O95677 639 aa12□□□□□ -0.49
SS18-213ENST00000579640 TCF7P36402 384 aaPredicted RBP12□□□□□ -0.49
SS18-213ENST00000579640 CTCFP49711 727 aaPredicted RBP12□□□□□ -0.49
SS18-213ENST00000579640 AMPD3Q01432 767 aa12□□□□□ -0.49
SS18-213ENST00000579640 BRDTQ58F21 947 aaPredicted RBP12□□□□□ -0.49
SS18-213ENST00000579640 TMEM63BQ5T3F8 832 aa12□□□□□ -0.49
SS18-213ENST00000579640 SWSAP1Q6NVH7 229 aa12□□□□□ -0.49
SS18-213ENST00000579640 SV2BQ7L1I2 683 aa12□□□□□ -0.49
SS18-213ENST00000579640 CCDC60Q8IWA6 550 aaPredicted RBP12□□□□□ -0.49
SS18-213ENST00000579640 AP5M1Q9H0R1 490 aa12□□□□□ -0.49
SS18-213ENST00000579640 BLOC1S4Q9NUP1 217 aa12□□□□□ -0.49
SS18-213ENST00000579640 KBTBD4Q9NVX7 518 aa12□□□□□ -0.49
SS18-213ENST00000579640 PTPN22Q9Y2R2 807 aa12□□□□□ -0.49
SS18-213ENST00000579640 MAFBQ9Y5Q3 323 aaPredicted RBP12□□□□□ -0.49
SS18-213ENST00000579640 PTCH2Q9Y6C5 1203 aa12□□□□□ -0.49
SS18-213ENST00000579640 EMSYQ7Z589 1322 aa12□□□□□ -0.49
SS18-213ENST00000579640 WDR81Q562E7 1941 aa12□□□□□ -0.49
SS18-213ENST00000579640 ADCY6O43306 1168 aa12□□□□□ -0.49
SS18-213ENST00000579640 HOXD8P13378 290 aaPredicted RBP12□□□□□ -0.49
SS18-213ENST00000579640 SLC26A2P50443 739 aa12□□□□□ -0.49
SS18-213ENST00000579640 STAT5BP51692 787 aa12□□□□□ -0.49
SS18-213ENST00000579640 GJC2Q5T442 439 aaPredicted RBP12□□□□□ -0.49
SS18-213ENST00000579640 PLPPR4Q7Z2D5 763 aa12□□□□□ -0.49
SS18-213ENST00000579640 SH3RF1Q7Z6J0 888 aa12□□□□□ -0.49
SS18-213ENST00000579640 TLK2Q86UE8 772 aa12□□□□□ -0.49
SS18-213ENST00000579640 PAGE5Q96GU1 130 aa12□□□□□ -0.49
SS18-213ENST00000579640 ANKEF1Q9NU02 776 aa12□□□□□ -0.49
SS18-213ENST00000579640 DBR1Q9UK59 544 aaKnown RBP12□□□□□ -0.49
SS18-213ENST00000579640 A6NJR5 290 aa11.99□□□□□ -0.49
SS18-213ENST00000579640 E9PMD0 336 aa11.99□□□□□ -0.49
SS18-213ENST00000579640 FOXN1O15353 648 aa11.99□□□□□ -0.49
SS18-213ENST00000579640 DYNC1LI2O43237 492 aaPredicted RBP11.99□□□□□ -0.49
SS18-213ENST00000579640 MSCO60682 206 aa11.99□□□□□ -0.49
SS18-213ENST00000579640 INHAP05111 366 aa11.99□□□□□ -0.49
SS18-213ENST00000579640 MMP3P08254 477 aa11.99□□□□□ -0.49
SS18-213ENST00000579640 PLA2G4BP0C869 781 aa11.99□□□□□ -0.49
SS18-213ENST00000579640 HSPA1AP0DMV8 641 aaKnown RBP11.99□□□□□ -0.49
SS18-213ENST00000579640 HSPA1BP0DMV9 641 aaKnown RBP11.99□□□□□ -0.49
SS18-213ENST00000579640 RARBP10826 455 aa11.99□□□□□ -0.49
SS18-213ENST00000579640 CNGA1P29973 690 aa11.99□□□□□ -0.49
SS18-213ENST00000579640 CPT1AP50416 773 aa11.99□□□□□ -0.49
SS18-213ENST00000579640 TRIM32Q13049 653 aa11.99□□□□□ -0.49
SS18-213ENST00000579640 POSTNQ15063 836 aa11.99□□□□□ -0.49
SS18-213ENST00000579640 UGCGQ16739 394 aa11.99□□□□□ -0.49
SS18-213ENST00000579640 DGKDQ16760 1214 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms