RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 GUCY1A3Q02108 690 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 MAP4K2Q12851 820 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 NOGQ13253 232 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 ALFQ53S48 1182 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 ZBTB37Q5TC79 503 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 CCDC70Q6NSX1 233 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 PGM2L1Q6PCE3 622 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 KCNT2Q6UVM3 1135 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 Q7L0L9 218 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 TRIM46Q7Z4K8 759 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 SRLQ86TD4 932 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 SAPCD2Q86UD0 394 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 KIF18BQ86Y91 864 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 CMTR2Q8IYT2 770 aaKnown RBP7.05□□□□□ -1.28
VPS53-219ENST00000576019 CRACR2BQ8N4Y2 399 aaPredicted RBP7.05□□□□□ -1.28
VPS53-219ENST00000576019 IGSF22Q8N9C0 903 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 TEX19Q8NA77 164 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 CHTF18Q8WVB6 975 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 FAXDC2Q96IV6 333 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 AIFM3Q96NN9 605 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 PLCD4Q9BRC7 762 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 MTA3Q9BTC8 594 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 USP26Q9BXU7 913 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 ATP13A2Q9NQ11 1180 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 C14orf119Q9NWQ9 140 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 DMTF1Q9Y222 760 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 MORC2Q9Y6X9 1032 aaPredicted RBP7.05□□□□□ -1.28
VPS53-219ENST00000576019 ANKRD36BQ8N2N9 1353 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 DOT1LQ8TEK3 1739 aa7.04□□□□□ -1.28
VPS53-219ENST00000576019 WASHC2AQ641Q2 1341 aa7.04□□□□□ -1.28
VPS53-219ENST00000576019 KLRG2A4D1S0 409 aaPredicted RBP7.04□□□□□ -1.28
VPS53-219ENST00000576019 XPOTO43592 962 aaKnown RBP7.04□□□□□ -1.28
VPS53-219ENST00000576019 APPP05067 770 aa7.04□□□□□ -1.28
VPS53-219ENST00000576019 MYBP10242 640 aa7.04□□□□□ -1.28
VPS53-219ENST00000576019 ITGA4P13612 1032 aa7.04□□□□□ -1.28
VPS53-219ENST00000576019 ECI1P42126 302 aa7.04□□□□□ -1.28
VPS53-219ENST00000576019 PCBP4P57723 403 aaKnown RBP7.04□□□□□ -1.28
VPS53-219ENST00000576019 RING1Q06587 406 aa7.04□□□□□ -1.28
VPS53-219ENST00000576019 ADCY1Q08828 1119 aa7.04□□□□□ -1.28
VPS53-219ENST00000576019 PPP2R5DQ14738 602 aa7.04□□□□□ -1.28
VPS53-219ENST00000576019 NKG7Q16617 165 aa7.04□□□□□ -1.28
VPS53-219ENST00000576019 SLC6A19Q695T7 634 aa7.04□□□□□ -1.28
VPS53-219ENST00000576019 MTDHQ86UE4 582 aaKnown RBP7.04□□□□□ -1.28
VPS53-219ENST00000576019 FCHSD1Q86WN1 690 aa7.04□□□□□ -1.28
VPS53-219ENST00000576019 MRPL41Q8IXM3 137 aaKnown RBP7.04□□□□□ -1.28
VPS53-219ENST00000576019 CLRN3Q8NCR9 226 aa7.04□□□□□ -1.28
VPS53-219ENST00000576019 GTPBP3Q969Y2 492 aaKnown RBP7.04□□□□□ -1.28
VPS53-219ENST00000576019 KIFC2Q96AC6 838 aa7.04□□□□□ -1.28
VPS53-219ENST00000576019 RUNDC1Q96C34 613 aa7.04□□□□□ -1.28
VPS53-219ENST00000576019 TNIP3Q96KP6 325 aa7.04□□□□□ -1.28
VPS53-219ENST00000576019 ZFP42Q96MM3 310 aa7.04□□□□□ -1.28
VPS53-219ENST00000576019 SCLT1Q96NL6 688 aa7.04□□□□□ -1.28
VPS53-219ENST00000576019 HERPUD2Q9BSE4 406 aa7.04□□□□□ -1.28
VPS53-219ENST00000576019 PAGR1Q9BTK6 254 aa7.04□□□□□ -1.28
VPS53-219ENST00000576019 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.04□□□□□ -1.28
VPS53-219ENST00000576019 GP6Q9HCN6 339 aa7.04□□□□□ -1.28
VPS53-219ENST00000576019 CYP26B1Q9NR63 512 aa7.04□□□□□ -1.28
VPS53-219ENST00000576019 KLHL11Q9NVR0 708 aa7.04□□□□□ -1.28
VPS53-219ENST00000576019 GTF2A1LQ9UNN4 478 aa7.04□□□□□ -1.28
VPS53-219ENST00000576019 ZKSCAN5Q9Y2L8 839 aa7.04□□□□□ -1.28
VPS53-219ENST00000576019 PCDHGC5Q9Y5F6 944 aa7.04□□□□□ -1.28
VPS53-219ENST00000576019 PCDHA8Q9Y5H6 950 aa7.04□□□□□ -1.28
VPS53-219ENST00000576019 LINC01387J3KSC0 135 aa7.03□□□□□ -1.28
VPS53-219ENST00000576019 AQP7O14520 342 aa7.03□□□□□ -1.28
VPS53-219ENST00000576019 ULK1O75385 1050 aa7.03□□□□□ -1.28
VPS53-219ENST00000576019 SOD2P04179 222 aa7.03□□□□□ -1.28
VPS53-219ENST00000576019 RBP3P10745 1247 aa7.03□□□□□ -1.28
VPS53-219ENST00000576019 EN2P19622 333 aaPredicted RBP7.03□□□□□ -1.28
VPS53-219ENST00000576019 MAN1A1P33908 653 aa7.03□□□□□ -1.28
VPS53-219ENST00000576019 ADH7P40394 386 aa7.03□□□□□ -1.28
VPS53-219ENST00000576019 GJA9P57773 515 aa7.03□□□□□ -1.28
VPS53-219ENST00000576019 LONRF1Q17RB8 773 aa7.03□□□□□ -1.28
VPS53-219ENST00000576019 SLC4A8Q2Y0W8 1093 aa7.03□□□□□ -1.28
VPS53-219ENST00000576019 ZNF468Q5VIY5 522 aaPredicted RBP7.03□□□□□ -1.28
VPS53-219ENST00000576019 PSAPL1Q6NUJ1 521 aa7.03□□□□□ -1.28
VPS53-219ENST00000576019 C11orf74Q86VG3 221 aa7.03□□□□□ -1.28
VPS53-219ENST00000576019 HID1Q8IV36 788 aa7.03□□□□□ -1.28
VPS53-219ENST00000576019 TRIM22Q8IYM9 498 aa7.03□□□□□ -1.28
VPS53-219ENST00000576019 C7orf61Q8IZ16 206 aa7.03□□□□□ -1.28
VPS53-219ENST00000576019 ARHGEF39Q8N4T4 335 aa7.03□□□□□ -1.28
VPS53-219ENST00000576019 NGDNQ8NEJ9 315 aaKnown RBP7.03□□□□□ -1.28
VPS53-219ENST00000576019 ZNF837Q96EG3 531 aaPredicted RBP7.03□□□□□ -1.28
VPS53-219ENST00000576019 C1orf159Q96HA4 380 aa7.03□□□□□ -1.28
VPS53-219ENST00000576019 RCC1LQ96I51 464 aaKnown RBP7.03□□□□□ -1.28
VPS53-219ENST00000576019 WDR18Q9BV38 432 aa7.03□□□□□ -1.28
VPS53-219ENST00000576019 NLRC4Q9NPP4 1024 aa7.03□□□□□ -1.28
VPS53-219ENST00000576019 MKS1Q9NXB0 559 aa7.03□□□□□ -1.28
VPS53-219ENST00000576019 RNF186Q9NXI6 227 aa7.03□□□□□ -1.28
VPS53-219ENST00000576019 GTF2IRD1Q9UHL9 959 aa7.03□□□□□ -1.28
VPS53-219ENST00000576019 KLF15Q9UIH9 416 aa7.03□□□□□ -1.28
VPS53-219ENST00000576019 COQ6Q9Y2Z9 468 aa7.03□□□□□ -1.28
VPS53-219ENST00000576019 IPPQ9Y573 584 aa7.03□□□□□ -1.28
VPS53-219ENST00000576019 SCINQ9Y6U3 715 aa7.03□□□□□ -1.28
VPS53-219ENST00000576019 ANKRD30AQ9BXX3 1397 aa7.03□□□□□ -1.28
VPS53-219ENST00000576019 RPTORQ8N122 1335 aa7.02□□□□□ -1.28
VPS53-219ENST00000576019 CFAP69A5D8W1 941 aa7.02□□□□□ -1.29
VPS53-219ENST00000576019 SOBPA7XYQ1 873 aa7.02□□□□□ -1.29
VPS53-219ENST00000576019 PCDHGA12O60330 932 aa7.02□□□□□ -1.29
VPS53-219ENST00000576019 MAN1A2O60476 641 aa7.02□□□□□ -1.29
VPS53-219ENST00000576019 SIN3BO75182 1162 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 138.8 ms