RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 HIP1RO75146 1068 aa6.78□□□□□ -1.32
NUP88-208ENST00000574087 KRT37O76014 449 aa6.78□□□□□ -1.32
NUP88-208ENST00000574087 ATP2A2P16615 1042 aaKnown RBP6.78□□□□□ -1.32
NUP88-208ENST00000574087 DLX2Q07687 328 aaPredicted RBP6.78□□□□□ -1.32
NUP88-208ENST00000574087 VWA3BQ502W6 1294 aa6.78□□□□□ -1.32
NUP88-208ENST00000574087 CC2D1AQ6P1N0 951 aaPredicted RBP6.78□□□□□ -1.32
NUP88-208ENST00000574087 TMC5Q6UXY8 1006 aa6.78□□□□□ -1.32
NUP88-208ENST00000574087 STK32CQ86UX6 486 aa6.78□□□□□ -1.32
NUP88-208ENST00000574087 LEO1Q8WVC0 666 aaPredicted RBP6.78□□□□□ -1.32
NUP88-208ENST00000574087 TMEM209Q96SK2 561 aa6.78□□□□□ -1.32
NUP88-208ENST00000574087 ZKSCAN5Q9Y2L8 839 aa6.78□□□□□ -1.32
NUP88-208ENST00000574087 PRAMEF25A6NGN4 478 aa6.77□□□□□ -1.33
NUP88-208ENST00000574087 RASSF10A6NK89 507 aa6.77□□□□□ -1.33
NUP88-208ENST00000574087 DBX1A6NMT0 343 aa6.77□□□□□ -1.33
NUP88-208ENST00000574087 ZNF839A8K0R7 811 aa6.77□□□□□ -1.33
NUP88-208ENST00000574087 ENO2P09104 434 aaPredicted RBP6.77□□□□□ -1.33
NUP88-208ENST00000574087 PFKPQ01813 784 aa6.77□□□□□ -1.33
NUP88-208ENST00000574087 VASNQ6EMK4 673 aa6.77□□□□□ -1.33
NUP88-208ENST00000574087 SAPCD2Q86UD0 394 aa6.77□□□□□ -1.33
NUP88-208ENST00000574087 FAM177A1Q8N128 213 aaPredicted RBP6.77□□□□□ -1.33
NUP88-208ENST00000574087 DTX3Q8N9I9 347 aa6.77□□□□□ -1.33
NUP88-208ENST00000574087 SMC1BQ8NDV3 1235 aa6.77□□□□□ -1.33
NUP88-208ENST00000574087 CHAC2Q8WUX2 184 aa6.77□□□□□ -1.33
NUP88-208ENST00000574087 ZBTB8AQ96BR9 441 aa6.77□□□□□ -1.33
NUP88-208ENST00000574087 IFT57Q9NWB7 429 aa6.77□□□□□ -1.33
NUP88-208ENST00000574087 SPATA6Q9NWH7 488 aaPredicted RBP6.77□□□□□ -1.33
NUP88-208ENST00000574087 OXSMQ9NWU1 459 aa6.77□□□□□ -1.33
NUP88-208ENST00000574087 BTBD7Q9P203 1132 aa6.77□□□□□ -1.33
NUP88-208ENST00000574087 H7C1D1 291 aa6.76□□□□□ -1.33
NUP88-208ENST00000574087 GAS7O60861 476 aa6.76□□□□□ -1.33
NUP88-208ENST00000574087 AOAHP28039 575 aa6.76□□□□□ -1.33
NUP88-208ENST00000574087 SOX5P35711 763 aa6.76□□□□□ -1.33
NUP88-208ENST00000574087 SCNN1BP51168 640 aa6.76□□□□□ -1.33
NUP88-208ENST00000574087 SMAD4Q13485 552 aaKnown RBP6.76□□□□□ -1.33
NUP88-208ENST00000574087 RTP5Q14D33 572 aa6.76□□□□□ -1.33
NUP88-208ENST00000574087 DHCR24Q15392 516 aa6.76□□□□□ -1.33
NUP88-208ENST00000574087 CATSPEREQ5SY80 951 aa6.76□□□□□ -1.33
NUP88-208ENST00000574087 C1QL4Q86Z23 238 aa6.76□□□□□ -1.33
NUP88-208ENST00000574087 UBR7Q8N806 425 aa6.76□□□□□ -1.33
NUP88-208ENST00000574087 TTLL6Q8N841 843 aa6.76□□□□□ -1.33
NUP88-208ENST00000574087 OR2W6PQ8NHA6 318 aa6.76□□□□□ -1.33
NUP88-208ENST00000574087 SPC25Q9HBM1 224 aa6.76□□□□□ -1.33
NUP88-208ENST00000574087 DLL4Q9NR61 685 aa6.76□□□□□ -1.33
NUP88-208ENST00000574087 H2AFY2Q9P0M6 372 aaPredicted RBP6.76□□□□□ -1.33
NUP88-208ENST00000574087 SH3D21A4FU49 640 aa6.75□□□□□ -1.33
NUP88-208ENST00000574087 FFAR3O14843 346 aa6.75□□□□□ -1.33
NUP88-208ENST00000574087 FOXP2O15409 715 aa6.75□□□□□ -1.33
NUP88-208ENST00000574087 NUAK1O60285 661 aa6.75□□□□□ -1.33
NUP88-208ENST00000574087 MMEP08473 750 aa6.75□□□□□ -1.33
NUP88-208ENST00000574087 CANXP27824 592 aaKnown RBP6.75□□□□□ -1.33
NUP88-208ENST00000574087 CFPP27918 469 aa6.75□□□□□ -1.33
NUP88-208ENST00000574087 AFF3P51826 1226 aaKnown RBP6.75□□□□□ -1.33
NUP88-208ENST00000574087 KIF11P52732 1056 aa6.75□□□□□ -1.33
NUP88-208ENST00000574087 TMEM132BQ14DG7 1078 aa6.75□□□□□ -1.33
NUP88-208ENST00000574087 PRR31Q5SQ13 230 aa6.75□□□□□ -1.33
NUP88-208ENST00000574087 RNF187Q5TA31 235 aaPredicted RBP6.75□□□□□ -1.33
NUP88-208ENST00000574087 CIAPIN1Q6FI81 312 aa6.75□□□□□ -1.33
NUP88-208ENST00000574087 DDX46Q7L014 1031 aaKnown RBP6.75□□□□□ -1.33
NUP88-208ENST00000574087 STRA8Q7Z7C7 330 aa6.75□□□□□ -1.33
NUP88-208ENST00000574087 AFAP1L2Q8N4X5 818 aa6.75□□□□□ -1.33
NUP88-208ENST00000574087 KIAA1958Q8N8K9 716 aa6.75□□□□□ -1.33
NUP88-208ENST00000574087 IGDCC4Q8TDY8 1250 aa6.75□□□□□ -1.33
NUP88-208ENST00000574087 CHTF18Q8WVB6 975 aa6.75□□□□□ -1.33
NUP88-208ENST00000574087 ASB15Q8WXK1 588 aa6.75□□□□□ -1.33
NUP88-208ENST00000574087 TOX2Q96NM4 488 aa6.75□□□□□ -1.33
NUP88-208ENST00000574087 IRF2BPLQ9H1B7 796 aa6.75□□□□□ -1.33
NUP88-208ENST00000574087 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.75□□□□□ -1.33
NUP88-208ENST00000574087 SLC39A2Q9NP94 309 aa6.75□□□□□ -1.33
NUP88-208ENST00000574087 ACSS2Q9NR19 701 aa6.75□□□□□ -1.33
NUP88-208ENST00000574087 SPO11Q9Y5K1 396 aa6.75□□□□□ -1.33
NUP88-208ENST00000574087 DNAJC6O75061 913 aa6.74□□□□□ -1.33
NUP88-208ENST00000574087 BPIP17213 487 aa6.74□□□□□ -1.33
NUP88-208ENST00000574087 ADCYAP1R1P41586 468 aa6.74□□□□□ -1.33
NUP88-208ENST00000574087 FNTBP49356 437 aa6.74□□□□□ -1.33
NUP88-208ENST00000574087 ZNF174Q15697 407 aa6.74□□□□□ -1.33
NUP88-208ENST00000574087 SKIDA1Q1XH10 827 aa6.74□□□□□ -1.33
NUP88-208ENST00000574087 FILIP1Q7Z7B0 1213 aa6.74□□□□□ -1.33
NUP88-208ENST00000574087 TMEM151BQ8IW70 566 aa6.74□□□□□ -1.33
NUP88-208ENST00000574087 ZNF526Q8TF50 670 aaPredicted RBP6.74□□□□□ -1.33
NUP88-208ENST00000574087 ZSWIM3Q96MP5 696 aa6.74□□□□□ -1.33
NUP88-208ENST00000574087 CLIC6Q96NY7 704 aa6.74□□□□□ -1.33
NUP88-208ENST00000574087 GBP4Q96PP9 640 aa6.74□□□□□ -1.33
NUP88-208ENST00000574087 THG1LQ9NWX6 298 aaKnown RBP6.74□□□□□ -1.33
NUP88-208ENST00000574087 ARHGAP28Q9P2N2 729 aa6.74□□□□□ -1.33
NUP88-208ENST00000574087 ASB1Q9Y576 335 aa6.74□□□□□ -1.33
NUP88-208ENST00000574087 GOLGA6L22H0YM25 854 aa6.73□□□□□ -1.33
NUP88-208ENST00000574087 MPIG6BO95866 241 aa6.73□□□□□ -1.33
NUP88-208ENST00000574087 IL18BPO95998 194 aa6.73□□□□□ -1.33
NUP88-208ENST00000574087 CYP17A1P05093 508 aa6.73□□□□□ -1.33
NUP88-208ENST00000574087 SLC9A1P19634 815 aa6.73□□□□□ -1.33
NUP88-208ENST00000574087 POU3F3P20264 500 aaPredicted RBP6.73□□□□□ -1.33
NUP88-208ENST00000574087 PTGS1P23219 599 aa6.73□□□□□ -1.33
NUP88-208ENST00000574087 RPL13P26373 211 aaKnown RBP6.73□□□□□ -1.33
NUP88-208ENST00000574087 MC4RP32245 332 aa6.73□□□□□ -1.33
NUP88-208ENST00000574087 LSSP48449 732 aa6.73□□□□□ -1.33
NUP88-208ENST00000574087 LRRC56Q8IYG6 542 aaPredicted RBP6.73□□□□□ -1.33
NUP88-208ENST00000574087 EFHBQ8N7U6 833 aa6.73□□□□□ -1.33
NUP88-208ENST00000574087 LINC01356Q8N9X3 169 aa6.73□□□□□ -1.33
NUP88-208ENST00000574087 TP53I13Q8NBR0 393 aaPredicted RBP6.73□□□□□ -1.33
NUP88-208ENST00000574087 FOXRED1Q96CU9 486 aaPredicted RBP6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms