RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 TBC1D22AQ8WUA7 517 aa17.14■□□□□ 0.33
NUP88-207ENST00000573584 KAT2BQ92831 832 aa17.14■□□□□ 0.33
NUP88-207ENST00000573584 ISCUQ9H1K1 167 aa17.14■□□□□ 0.33
NUP88-207ENST00000573584 CDK5RAP2Q96SN8 1893 aa17.13■□□□□ 0.33
NUP88-207ENST00000573584 USP17L15C9J2P7 530 aa17.13■□□□□ 0.33
NUP88-207ENST00000573584 USP17L13C9JLJ4 530 aa17.13■□□□□ 0.33
NUP88-207ENST00000573584 USP17L11C9JVI0 530 aa17.13■□□□□ 0.33
NUP88-207ENST00000573584 USP17L18D6R9N7 530 aa17.13■□□□□ 0.33
NUP88-207ENST00000573584 USP17L22D6RA61 530 aa17.13■□□□□ 0.33
NUP88-207ENST00000573584 USP17L17D6RBQ6 530 aa17.13■□□□□ 0.33
NUP88-207ENST00000573584 USP17L19D6RCP7 530 aa17.13■□□□□ 0.33
NUP88-207ENST00000573584 USP17L20D6RJB6 530 aa17.13■□□□□ 0.33
NUP88-207ENST00000573584 UCHL3P15374 230 aa17.13■□□□□ 0.33
NUP88-207ENST00000573584 HSPA9P38646 679 aaKnown RBP17.13■□□□□ 0.33
NUP88-207ENST00000573584 USP11P51784 963 aa17.13■□□□□ 0.33
NUP88-207ENST00000573584 GTF2A1P52655 376 aaPredicted RBP17.13■□□□□ 0.33
NUP88-207ENST00000573584 ERVK-9P63128 1117 aa17.13■□□□□ 0.33
NUP88-207ENST00000573584 USP17L24Q0WX57 530 aa17.13■□□□□ 0.33
NUP88-207ENST00000573584 USP17L6PQ6QN14 398 aa17.13■□□□□ 0.33
NUP88-207ENST00000573584 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.13■□□□□ 0.33
NUP88-207ENST00000573584 NAP1L4Q99733 375 aaKnown RBP17.13■□□□□ 0.33
NUP88-207ENST00000573584 ARMCX3Q9UH62 379 aaPredicted RBP17.13■□□□□ 0.33
NUP88-207ENST00000573584 SWAP70Q9UH65 585 aa17.13■□□□□ 0.33
NUP88-207ENST00000573584 ATF5Q9Y2D1 282 aaPredicted RBP17.13■□□□□ 0.33
NUP88-207ENST00000573584 BZW2Q9Y6E2 419 aaKnown RBP17.13■□□□□ 0.33
NUP88-207ENST00000573584 HMGB1P1B2RPK0 211 aaPredicted RBP17.13■□□□□ 0.33
NUP88-207ENST00000573584 STAT3P40763 770 aa17.13■□□□□ 0.33
NUP88-207ENST00000573584 CASP5P51878 434 aa17.13■□□□□ 0.33
NUP88-207ENST00000573584 IFI16Q16666 785 aaKnown RBP17.13■□□□□ 0.33
NUP88-207ENST00000573584 PTPROQ16827 1216 aa17.13■□□□□ 0.33
NUP88-207ENST00000573584 DNAAF5Q86Y56 855 aa17.13■□□□□ 0.33
NUP88-207ENST00000573584 C1orf131Q8NDD1 294 aaKnown RBP17.13■□□□□ 0.33
NUP88-207ENST00000573584 PBKQ96KB5 322 aa17.13■□□□□ 0.33
NUP88-207ENST00000573584 NAGPAQ9UK23 515 aa17.13■□□□□ 0.33
NUP88-207ENST00000573584 GOLGA6L10A6NI86 522 aa17.12■□□□□ 0.33
NUP88-207ENST00000573584 MED24O75448 989 aa17.12■□□□□ 0.33
NUP88-207ENST00000573584 PPP1R37O75864 691 aa17.12■□□□□ 0.33
NUP88-207ENST00000573584 GPATCH4Q5T3I0 446 aaKnown RBP17.12■□□□□ 0.33
NUP88-207ENST00000573584 MMS22LQ6ZRQ5 1243 aa17.12■□□□□ 0.33
NUP88-207ENST00000573584 PLCB1Q9NQ66 1216 aa17.12■□□□□ 0.33
NUP88-207ENST00000573584 FRMD3A2A2Y4 597 aa17.12■□□□□ 0.33
NUP88-207ENST00000573584 POTEFA5A3E0 1075 aa17.12■□□□□ 0.33
NUP88-207ENST00000573584 KIAA0754O94854 1291 aa17.12■□□□□ 0.33
NUP88-207ENST00000573584 AFPP02771 609 aaKnown RBP17.12■□□□□ 0.33
NUP88-207ENST00000573584 POTEIP0CG38 1075 aa17.12■□□□□ 0.33
NUP88-207ENST00000573584 SLC12A3P55017 1021 aa17.12■□□□□ 0.33
NUP88-207ENST00000573584 EXOC3L4Q17RC7 722 aa17.12■□□□□ 0.33
NUP88-207ENST00000573584 ALKBH5Q6P6C2 394 aaKnown RBP17.12■□□□□ 0.33
NUP88-207ENST00000573584 POTEGQ6S5H5 508 aa17.12■□□□□ 0.33
NUP88-207ENST00000573584 POTEEQ6S8J3 1075 aa17.12■□□□□ 0.33
NUP88-207ENST00000573584 FRMD5Q7Z6J6 570 aa17.12■□□□□ 0.33
NUP88-207ENST00000573584 SCFD2Q8WU76 684 aa17.12■□□□□ 0.33
NUP88-207ENST00000573584 AP1M1Q9BXS5 423 aa17.12■□□□□ 0.33
NUP88-207ENST00000573584 DHX36Q9H2U1 1008 aaKnown RBP17.12■□□□□ 0.33
NUP88-207ENST00000573584 CENPHQ9H3R5 247 aa17.12■□□□□ 0.33
NUP88-207ENST00000573584 SERPINB13Q9UIV8 391 aa17.12■□□□□ 0.33
NUP88-207ENST00000573584 PITPNM2Q9BZ72 1349 aa17.11■□□□□ 0.33
NUP88-207ENST00000573584 MDH1P40925 334 aaKnown RBP17.11■□□□□ 0.33
NUP88-207ENST00000573584 TRAPPC3LQ5T215 181 aa17.11■□□□□ 0.33
NUP88-207ENST00000573584 DPY19L2P1Q6NXN4 242 aa17.11■□□□□ 0.33
NUP88-207ENST00000573584 SPATS2Q86XZ4 545 aaKnown RBP17.11■□□□□ 0.33
NUP88-207ENST00000573584 OTUD6BQ8N6M0 293 aa17.11■□□□□ 0.33
NUP88-207ENST00000573584 LRRC57Q8N9N7 239 aa17.11■□□□□ 0.33
NUP88-207ENST00000573584 ACTRT1Q8TDG2 376 aa17.11■□□□□ 0.33
NUP88-207ENST00000573584 KCNMB3Q9NPA1 279 aa17.11■□□□□ 0.33
NUP88-207ENST00000573584 AHDC1Q5TGY3 1603 aaPredicted RBP17.11■□□□□ 0.33
NUP88-207ENST00000573584 PON1P27169 355 aa17.11■□□□□ 0.33
NUP88-207ENST00000573584 ITGB3BPQ13352 177 aaPredicted RBP17.11■□□□□ 0.33
NUP88-207ENST00000573584 CUL1Q13616 776 aa17.11■□□□□ 0.33
NUP88-207ENST00000573584 PTGISQ16647 500 aa17.11■□□□□ 0.33
NUP88-207ENST00000573584 NAA35Q5VZE5 725 aa17.11■□□□□ 0.33
NUP88-207ENST00000573584 EIF1ADQ8N9N8 165 aaKnown RBP17.11■□□□□ 0.33
NUP88-207ENST00000573584 MPHOSPH10O00566 681 aaKnown RBP17.1■□□□□ 0.33
NUP88-207ENST00000573584 XRCC5P13010 732 aaKnown RBP17.1■□□□□ 0.33
NUP88-207ENST00000573584 ECHS1P30084 290 aa17.1■□□□□ 0.33
NUP88-207ENST00000573584 HSD17B3P37058 310 aa17.1■□□□□ 0.33
NUP88-207ENST00000573584 KNOP1Q1ED39 458 aaKnown RBP17.1■□□□□ 0.33
NUP88-207ENST00000573584 FBXW10Q5XX13 1052 aa17.1■□□□□ 0.33
NUP88-207ENST00000573584 DDX42Q86XP3 938 aaKnown RBP eCLIP17.1■□□□□ 0.33
NUP88-207ENST00000573584 IPO4Q8TEX9 1081 aaKnown RBP17.1■□□□□ 0.33
NUP88-207ENST00000573584 DDX4Q9NQI0 724 aaKnown RBP17.1■□□□□ 0.33
NUP88-207ENST00000573584 POLLQ9UGP5 575 aa17.1■□□□□ 0.33
NUP88-207ENST00000573584 TRAF3IP3Q9Y228 551 aa17.1■□□□□ 0.33
NUP88-207ENST00000573584 TMCO5BA8MYB1 307 aa17.1■□□□□ 0.33
NUP88-207ENST00000573584 PGRMC1O00264 195 aaKnown RBP17.1■□□□□ 0.33
NUP88-207ENST00000573584 MEFVO15553 781 aaPredicted RBP17.1■□□□□ 0.33
NUP88-207ENST00000573584 SART1O43290 800 aaKnown RBP17.1■□□□□ 0.33
NUP88-207ENST00000573584 FLOT1O75955 427 aa17.1■□□□□ 0.33
NUP88-207ENST00000573584 HPDP32754 393 aaPredicted RBP17.1■□□□□ 0.33
NUP88-207ENST00000573584 SEC24CP53992 1094 aa17.1■□□□□ 0.33
NUP88-207ENST00000573584 GTF2IP78347 998 aa17.1■□□□□ 0.33
NUP88-207ENST00000573584 GIT2Q14161 759 aa17.1■□□□□ 0.33
NUP88-207ENST00000573584 DCAF17Q5H9S7 520 aaPredicted RBP17.1■□□□□ 0.33
NUP88-207ENST00000573584 PROCA1Q8NCQ7 364 aaPredicted RBP17.1■□□□□ 0.33
NUP88-207ENST00000573584 RBM46Q8TBY0 533 aaKnown RBP17.1■□□□□ 0.33
NUP88-207ENST00000573584 TMBIM4Q9HC24 238 aa17.1■□□□□ 0.33
NUP88-207ENST00000573584 F8W031 263 aaPredicted RBP17.1■□□□□ 0.33
NUP88-207ENST00000573584 GCOM1H8Y6P7 765 aaPredicted RBP17.1■□□□□ 0.33
NUP88-207ENST00000573584 MYZAPP0CAP1 466 aa17.1■□□□□ 0.33
NUP88-207ENST00000573584 PSMC6P62333 389 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms