RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 FSBPO95073 299 aa11.77□□□□□ -0.53
CCDC40-207ENST00000572253 FAM107AO95990 144 aa11.77□□□□□ -0.53
CCDC40-207ENST00000572253 H2AFZP0C0S5 128 aa11.77□□□□□ -0.53
CCDC40-207ENST00000572253 XRCC5P13010 732 aaKnown RBP11.77□□□□□ -0.53
CCDC40-207ENST00000572253 RPL13P26373 211 aaKnown RBP11.77□□□□□ -0.53
CCDC40-207ENST00000572253 KCNQ4P56696 695 aa11.77□□□□□ -0.53
CCDC40-207ENST00000572253 RC3H1Q5TC82 1133 aaKnown RBP11.77□□□□□ -0.53
CCDC40-207ENST00000572253 ALKBH5Q6P6C2 394 aaKnown RBP11.77□□□□□ -0.53
CCDC40-207ENST00000572253 H2AFVQ71UI9 128 aa11.77□□□□□ -0.53
CCDC40-207ENST00000572253 FRMD5Q7Z6J6 570 aa11.77□□□□□ -0.53
CCDC40-207ENST00000572253 CNPY4Q8N129 248 aa11.77□□□□□ -0.53
CCDC40-207ENST00000572253 TBC1D22AQ8WUA7 517 aa11.77□□□□□ -0.53
CCDC40-207ENST00000572253 UBLCP1Q8WVY7 318 aaPredicted RBP11.77□□□□□ -0.53
CCDC40-207ENST00000572253 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.77□□□□□ -0.53
CCDC40-207ENST00000572253 PAGR1Q9BTK6 254 aa11.77□□□□□ -0.53
CCDC40-207ENST00000572253 KANSL2Q9H9L4 492 aa11.77□□□□□ -0.53
CCDC40-207ENST00000572253 TM4SF1P30408 202 aa11.77□□□□□ -0.53
CCDC40-207ENST00000572253 EIF6P56537 245 aaKnown RBP11.77□□□□□ -0.53
CCDC40-207ENST00000572253 PTK2Q05397 1052 aa11.77□□□□□ -0.53
CCDC40-207ENST00000572253 GPATCH4Q5T3I0 446 aaKnown RBP11.77□□□□□ -0.53
CCDC40-207ENST00000572253 TCERG1LQ5VWI1 586 aa11.77□□□□□ -0.53
CCDC40-207ENST00000572253 MYCBPAPQ8TBZ2 947 aa11.77□□□□□ -0.53
CCDC40-207ENST00000572253 SCFD1Q8WVM8 642 aa11.77□□□□□ -0.53
CCDC40-207ENST00000572253 PIK3R5Q8WYR1 880 aa11.77□□□□□ -0.53
CCDC40-207ENST00000572253 METTL14Q9HCE5 456 aaKnown RBP11.77□□□□□ -0.53
CCDC40-207ENST00000572253 CD209Q9NNX6 404 aa11.77□□□□□ -0.53
CCDC40-207ENST00000572253 GGA2Q9UJY4 613 aa11.77□□□□□ -0.53
CCDC40-207ENST00000572253 PITPNM2Q9BZ72 1349 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 TTLL1O95922 423 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 HSD17B3P37058 310 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 CACNB1Q02641 598 aaPredicted RBP11.76□□□□□ -0.53
CCDC40-207ENST00000572253 ECM1Q16610 540 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 SWT1Q5T5J6 900 aaKnown RBP11.76□□□□□ -0.53
CCDC40-207ENST00000572253 DPP8Q6V1X1 898 aaPredicted RBP11.76□□□□□ -0.53
CCDC40-207ENST00000572253 C15orf52Q6ZUT6 534 aaKnown RBP11.76□□□□□ -0.53
CCDC40-207ENST00000572253 KAT2BQ92831 832 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 RPGRQ92834 1020 aaKnown RBP11.76□□□□□ -0.53
CCDC40-207ENST00000572253 HAS1Q92839 578 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 PPANQ9NQ55 473 aaKnown RBP11.76□□□□□ -0.53
CCDC40-207ENST00000572253 SWAP70Q9UH65 585 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 ATP2B4P23634 1241 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 ERVK-9P63128 1117 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 ZNF543Q08ER8 600 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 ITGB3BPQ13352 177 aaPredicted RBP11.76□□□□□ -0.53
CCDC40-207ENST00000572253 DCAF17Q5H9S7 520 aaPredicted RBP11.76□□□□□ -0.53
CCDC40-207ENST00000572253 MFSD14BQ5SR56 506 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 SLFN12Q8IYM2 578 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 ADGRF4Q8IZF3 695 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 C3orf20Q8ND61 904 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 SLITRK6Q9H5Y7 841 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 JMJD4Q9H9V9 463 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 POTEB3A0JP26 581 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 POTECB2RU33 542 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 MYBP10242 640 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 UCHL3P15374 230 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 CYP11B2P19099 503 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 RDXP35241 583 aaKnown RBP11.76□□□□□ -0.53
CCDC40-207ENST00000572253 NOVP48745 357 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 DRP2Q13474 957 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 POTEBQ6S5H4 581 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 SMIM5Q71RC9 77 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 MXD3Q9BW11 206 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 KCTD10Q9H3F6 313 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 TMEM59LQ9UK28 342 aa11.76□□□□□ -0.53
CCDC40-207ENST00000572253 NOC2LQ9Y3T9 749 aaKnown RBP11.76□□□□□ -0.53
CCDC40-207ENST00000572253 SART1O43290 800 aaKnown RBP11.75□□□□□ -0.53
CCDC40-207ENST00000572253 IFT88Q13099 833 aa11.75□□□□□ -0.53
CCDC40-207ENST00000572253 PICALMQ13492 652 aa11.75□□□□□ -0.53
CCDC40-207ENST00000572253 PRPF38AQ8NAV1 312 aaKnown RBP11.75□□□□□ -0.53
CCDC40-207ENST00000572253 SCFD2Q8WU76 684 aa11.75□□□□□ -0.53
CCDC40-207ENST00000572253 GPR101Q96P66 508 aaPredicted RBP11.75□□□□□ -0.53
CCDC40-207ENST00000572253 AP1M1Q9BXS5 423 aa11.75□□□□□ -0.53
CCDC40-207ENST00000572253 POLD4Q9HCU8 107 aa11.75□□□□□ -0.53
CCDC40-207ENST00000572253 FAM114A2Q9NRY5 505 aa11.75□□□□□ -0.53
CCDC40-207ENST00000572253 GGA1Q9UJY5 639 aa11.75□□□□□ -0.53
CCDC40-207ENST00000572253 UTP11Q9Y3A2 253 aaKnown RBP11.75□□□□□ -0.53
CCDC40-207ENST00000572253 ZBTB5O15062 677 aa11.75□□□□□ -0.53
CCDC40-207ENST00000572253 PPP1R12BO60237 982 aaPredicted RBP11.75□□□□□ -0.53
CCDC40-207ENST00000572253 IFFO1Q0D2I5 559 aa11.75□□□□□ -0.53
CCDC40-207ENST00000572253 ZNF571Q7Z3V5 609 aaPredicted RBP11.75□□□□□ -0.53
CCDC40-207ENST00000572253 DHX36Q9H2U1 1008 aaKnown RBP11.75□□□□□ -0.53
CCDC40-207ENST00000572253 NAGPAQ9UK23 515 aa11.75□□□□□ -0.53
CCDC40-207ENST00000572253 DNM3Q9UQ16 869 aa11.75□□□□□ -0.53
CCDC40-207ENST00000572253 STK24Q9Y6E0 443 aa11.75□□□□□ -0.53
CCDC40-207ENST00000572253 WNK3Q9BYP7 1800 aa11.75□□□□□ -0.53
CCDC40-207ENST00000572253 NPHP3-ACAD11A0A0J9YXS1 232 aa11.75□□□□□ -0.53
CCDC40-207ENST00000572253 SEC24CP53992 1094 aa11.75□□□□□ -0.53
CCDC40-207ENST00000572253 AGBL2Q5U5Z8 902 aa11.75□□□□□ -0.53
CCDC40-207ENST00000572253 BARGINQ6ZT62 677 aa11.75□□□□□ -0.53
CCDC40-207ENST00000572253 FAM163AQ96GL9 167 aaPredicted RBP11.75□□□□□ -0.53
CCDC40-207ENST00000572253 PLIN4Q96Q06 1357 aa11.75□□□□□ -0.53
CCDC40-207ENST00000572253 SPATA31A5Q5VU36 1347 aa11.74□□□□□ -0.53
CCDC40-207ENST00000572253 SPATA31A7Q8IWB4 1347 aa11.74□□□□□ -0.53
CCDC40-207ENST00000572253 GMNCA6NCL1 334 aa11.74□□□□□ -0.53
CCDC40-207ENST00000572253 TBCAO75347 108 aaKnown RBP11.74□□□□□ -0.53
CCDC40-207ENST00000572253 SNHG28P0DPA3 235 aa11.74□□□□□ -0.53
CCDC40-207ENST00000572253 ACTN1P12814 892 aa11.74□□□□□ -0.53
CCDC40-207ENST00000572253 FERP16591 822 aa11.74□□□□□ -0.53
CCDC40-207ENST00000572253 HDLBPQ00341 1268 aaKnown RBP11.74□□□□□ -0.53
CCDC40-207ENST00000572253 NFIXQ14938 502 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms