RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 HIC1Q14526 733 aa11.1□□□□□ -0.63
CIITA-207ENST00000571545 MBTPS1Q14703 1052 aa11.1□□□□□ -0.63
CIITA-207ENST00000571545 IER5Q5VY09 327 aa11.1□□□□□ -0.63
CIITA-207ENST00000571545 FAM160B1Q5W0V3 765 aa11.1□□□□□ -0.63
CIITA-207ENST00000571545 Q6ZUG5 572 aa11.1□□□□□ -0.63
CIITA-207ENST00000571545 PLPPR4Q7Z2D5 763 aa11.1□□□□□ -0.63
CIITA-207ENST00000571545 FAM177A1Q8N128 213 aaPredicted RBP11.1□□□□□ -0.63
CIITA-207ENST00000571545 REXO1Q8N1G1 1221 aaKnown RBP11.1□□□□□ -0.63
CIITA-207ENST00000571545 MICALL1Q8N3F8 863 aa11.1□□□□□ -0.63
CIITA-207ENST00000571545 ASB2Q96Q27 587 aa11.1□□□□□ -0.63
CIITA-207ENST00000571545 RNF26Q9BY78 433 aaPredicted RBP11.1□□□□□ -0.63
CIITA-207ENST00000571545 AGXT2Q9BYV1 514 aa11.1□□□□□ -0.63
CIITA-207ENST00000571545 ZMYND12Q9H0C1 365 aa11.1□□□□□ -0.63
CIITA-207ENST00000571545 TRPC6Q9Y210 931 aa11.1□□□□□ -0.63
CIITA-207ENST00000571545 SNX14Q9Y5W7 946 aa11.1□□□□□ -0.63
CIITA-207ENST00000571545 SQORQ9Y6N5 450 aa11.1□□□□□ -0.63
CIITA-207ENST00000571545 RALGAPA2Q2PPJ7 1873 aa11.1□□□□□ -0.63
CIITA-207ENST00000571545 A0A0C4DFX4 3053 aa11.1□□□□□ -0.63
CIITA-207ENST00000571545 UNC80Q8N2C7 3258 aa11.1□□□□□ -0.63
CIITA-207ENST00000571545 GSTTP1A0A1W2PQM5 241 aa11.09□□□□□ -0.63
CIITA-207ENST00000571545 MEIS1O00470 390 aa11.09□□□□□ -0.63
CIITA-207ENST00000571545 PRPF3O43395 683 aaKnown RBP11.09□□□□□ -0.63
CIITA-207ENST00000571545 CYP3A4P08684 503 aa11.09□□□□□ -0.63
CIITA-207ENST00000571545 MARK3P27448 753 aa11.09□□□□□ -0.63
CIITA-207ENST00000571545 ACTR2P61160 394 aa11.09□□□□□ -0.63
CIITA-207ENST00000571545 ERVK-21P61565 698 aa11.09□□□□□ -0.63
CIITA-207ENST00000571545 HTRA4P83105 476 aaPredicted RBP11.09□□□□□ -0.63
CIITA-207ENST00000571545 COL9A3Q14050 684 aaPredicted RBP11.09□□□□□ -0.63
CIITA-207ENST00000571545 SKIV2LQ15477 1246 aaKnown RBP11.09□□□□□ -0.63
CIITA-207ENST00000571545 CCDC85BQ15834 202 aaPredicted RBP11.09□□□□□ -0.63
CIITA-207ENST00000571545 CPLX2Q6PUV4 134 aaKnown RBP11.09□□□□□ -0.63
CIITA-207ENST00000571545 TRIM22Q8IYM9 498 aa11.09□□□□□ -0.63
CIITA-207ENST00000571545 YME1L1Q96TA2 773 aa11.09□□□□□ -0.63
CIITA-207ENST00000571545 C22orf23Q9BZE7 217 aa11.09□□□□□ -0.63
CIITA-207ENST00000571545 BCAS3Q9H6U6 928 aa11.09□□□□□ -0.63
CIITA-207ENST00000571545 SH3GLB2Q9NR46 395 aa11.09□□□□□ -0.63
CIITA-207ENST00000571545 PKD2L1Q9P0L9 805 aa11.09□□□□□ -0.63
CIITA-207ENST00000571545 RWDD3Q9Y3V2 267 aa11.09□□□□□ -0.63
CIITA-207ENST00000571545 MTCH2Q9Y6C9 303 aa11.09□□□□□ -0.63
CIITA-207ENST00000571545 PRRC2BQ5JSZ5 2229 aaKnown RBP11.08□□□□□ -0.64
CIITA-207ENST00000571545 COL1A2P08123 1366 aa11.08□□□□□ -0.64
CIITA-207ENST00000571545 LINC01553A4QN01 128 aa11.08□□□□□ -0.64
CIITA-207ENST00000571545 IFNAR1P17181 557 aa11.08□□□□□ -0.64
CIITA-207ENST00000571545 CDC27P30260 824 aa11.08□□□□□ -0.64
CIITA-207ENST00000571545 ADD1P35611 737 aaKnown RBP11.08□□□□□ -0.64
CIITA-207ENST00000571545 STAT5BP51692 787 aa11.08□□□□□ -0.64
CIITA-207ENST00000571545 APOBRQ0VD83 1088 aa11.08□□□□□ -0.64
CIITA-207ENST00000571545 GRB10Q13322 594 aa11.08□□□□□ -0.64
CIITA-207ENST00000571545 PTPROQ16827 1216 aa11.08□□□□□ -0.64
CIITA-207ENST00000571545 ODR4Q5SWX8 454 aa11.08□□□□□ -0.64
CIITA-207ENST00000571545 TYW1BQ6NUM6 668 aa11.08□□□□□ -0.64
CIITA-207ENST00000571545 MIS18BP1Q6P0N0 1132 aa11.08□□□□□ -0.64
CIITA-207ENST00000571545 TSHZ1Q6ZSZ6 1077 aa11.08□□□□□ -0.64
CIITA-207ENST00000571545 SKAP1Q86WV1 359 aa11.08□□□□□ -0.64
CIITA-207ENST00000571545 PLA2G4DQ86XP0 818 aa11.08□□□□□ -0.64
CIITA-207ENST00000571545 NME8Q8N427 588 aa11.08□□□□□ -0.64
CIITA-207ENST00000571545 SP7Q8TDD2 431 aaPredicted RBP11.08□□□□□ -0.64
CIITA-207ENST00000571545 TOP1MTQ969P6 601 aa11.08□□□□□ -0.64
CIITA-207ENST00000571545 FTHL17Q9BXU8 183 aa11.08□□□□□ -0.64
CIITA-207ENST00000571545 CERS4Q9HA82 394 aa11.08□□□□□ -0.64
CIITA-207ENST00000571545 AGO4Q9HCK5 861 aaKnown RBP11.08□□□□□ -0.64
CIITA-207ENST00000571545 FAM217BQ9NTX9 383 aaPredicted RBP11.08□□□□□ -0.64
CIITA-207ENST00000571545 TBC1D22BQ9NU19 505 aa11.08□□□□□ -0.64
CIITA-207ENST00000571545 MYH9P35579 1960 aaKnown RBP11.08□□□□□ -0.64
CIITA-207ENST00000571545 CHD7Q9P2D1 2997 aa11.07□□□□□ -0.64
CIITA-207ENST00000571545 TRANK1O15050 2925 aa11.07□□□□□ -0.64
CIITA-207ENST00000571545 NLRC5Q86WI3 1866 aa11.07□□□□□ -0.64
CIITA-207ENST00000571545 POTEB3A0JP26 581 aa11.07□□□□□ -0.64
CIITA-207ENST00000571545 IPO5O00410 1097 aaKnown RBP11.07□□□□□ -0.64
CIITA-207ENST00000571545 CPLX1O14810 134 aa11.07□□□□□ -0.64
CIITA-207ENST00000571545 BACH1O14867 736 aa11.07□□□□□ -0.64
CIITA-207ENST00000571545 HBP1O60381 514 aa11.07□□□□□ -0.64
CIITA-207ENST00000571545 EVCP57679 992 aa11.07□□□□□ -0.64
CIITA-207ENST00000571545 MRPS6P82932 125 aaKnown RBP11.07□□□□□ -0.64
CIITA-207ENST00000571545 KRT76Q01546 638 aa11.07□□□□□ -0.64
CIITA-207ENST00000571545 ZNF746Q6NUN9 644 aaPredicted RBP11.07□□□□□ -0.64
CIITA-207ENST00000571545 POTEBQ6S5H4 581 aa11.07□□□□□ -0.64
CIITA-207ENST00000571545 RUFY3Q7L099 469 aa11.07□□□□□ -0.64
CIITA-207ENST00000571545 SMAP1Q8IYB5 467 aaPredicted RBP11.07□□□□□ -0.64
CIITA-207ENST00000571545 ZNF710Q8N1W2 664 aa11.07□□□□□ -0.64
CIITA-207ENST00000571545 FBXO22Q8NEZ5 403 aa11.07□□□□□ -0.64
CIITA-207ENST00000571545 ZNF577Q9BSK1 485 aa11.07□□□□□ -0.64
CIITA-207ENST00000571545 CEP131Q9UPN4 1083 aa11.07□□□□□ -0.64
CIITA-207ENST00000571545 PCDHA2Q9Y5H9 948 aa11.07□□□□□ -0.64
CIITA-207ENST00000571545 CYP46A1Q9Y6A2 500 aa11.07□□□□□ -0.64
CIITA-207ENST00000571545 TTC28Q96AY4 2481 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 SMIM35A0A1B0GVV1 85 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 LCHNA4D1U4 455 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 EPOPA6NHQ4 379 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 TNFRSF10AO00220 468 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 CDKL5O76039 1030 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 ATG7O95352 703 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 CHRNA1P02708 482 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 ARP10275 920 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 GHRP10912 638 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 INSRRP14616 1297 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 IGBP1P78318 339 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 MGAT3Q09327 533 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 ITGB3BPQ13352 177 aaPredicted RBP11.06□□□□□ -0.64
CIITA-207ENST00000571545 TIGD5Q53EQ6 642 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms