RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 KRT76Q01546 638 aa23.26■■□□□ 1.31
VPS53-210ENST00000571456 CYFIP1Q7L576 1253 aa23.26■■□□□ 1.31
VPS53-210ENST00000571456 COPS5Q92905 334 aa23.26■■□□□ 1.31
VPS53-210ENST00000571456 STARD7Q9NQZ5 370 aa23.26■■□□□ 1.31
VPS53-210ENST00000571456 SLC9A2Q9UBY0 812 aa23.26■■□□□ 1.31
VPS53-210ENST00000571456 DAXXQ9UER7 740 aaPredicted RBP23.26■■□□□ 1.31
VPS53-210ENST00000571456 MSH4O15457 936 aa23.25■■□□□ 1.31
VPS53-210ENST00000571456 ATP9AO75110 1047 aa23.25■■□□□ 1.31
VPS53-210ENST00000571456 KCNQ1P51787 676 aa23.25■■□□□ 1.31
VPS53-210ENST00000571456 ZNF365Q70YC5 407 aa23.25■■□□□ 1.31
VPS53-210ENST00000571456 SMAP1Q8IYB5 467 aaPredicted RBP23.25■■□□□ 1.31
VPS53-210ENST00000571456 SLC5A5Q92911 643 aa23.25■■□□□ 1.31
VPS53-210ENST00000571456 GLT1D1Q96MS3 346 aa23.25■■□□□ 1.31
VPS53-210ENST00000571456 SLC28A3Q9HAS3 691 aa23.25■■□□□ 1.31
VPS53-210ENST00000571456 DOCK5Q9H7D0 1870 aa23.25■■□□□ 1.31
VPS53-210ENST00000571456 ELP1O95163 1332 aa23.25■■□□□ 1.31
VPS53-210ENST00000571456 LAD1O00515 517 aa23.24■■□□□ 1.31
VPS53-210ENST00000571456 NEMFO60524 1076 aa23.24■■□□□ 1.31
VPS53-210ENST00000571456 MMP3P08254 477 aa23.24■■□□□ 1.31
VPS53-210ENST00000571456 CSF2RAP15509 400 aa23.24■■□□□ 1.31
VPS53-210ENST00000571456 ACLYP53396 1101 aa23.24■■□□□ 1.31
VPS53-210ENST00000571456 KCNA10Q16322 511 aa23.24■■□□□ 1.31
VPS53-210ENST00000571456 TTC38Q5R3I4 469 aa23.24■■□□□ 1.31
VPS53-210ENST00000571456 TMEM63BQ5T3F8 832 aa23.24■■□□□ 1.31
VPS53-210ENST00000571456 ZNF746Q6NUN9 644 aaPredicted RBP23.24■■□□□ 1.31
VPS53-210ENST00000571456 PSRC1Q6PGN9 363 aaPredicted RBP23.24■■□□□ 1.31
VPS53-210ENST00000571456 AFG1LQ8WV93 481 aa23.24■■□□□ 1.31
VPS53-210ENST00000571456 SEPT1Q8WYJ6 367 aa23.24■■□□□ 1.31
VPS53-210ENST00000571456 NKX2-4Q9H2Z4 354 aa23.24■■□□□ 1.31
VPS53-210ENST00000571456 KCNMB3Q9NPA1 279 aa23.24■■□□□ 1.31
VPS53-210ENST00000571456 MTMR6Q9Y217 621 aa23.24■■□□□ 1.31
VPS53-210ENST00000571456 FAM205CA6NFA0 338 aa23.23■■□□□ 1.31
VPS53-210ENST00000571456 MARCH6O60337 910 aa23.23■■□□□ 1.31
VPS53-210ENST00000571456 GAS7O60861 476 aa23.23■■□□□ 1.31
VPS53-210ENST00000571456 BMP15O95972 392 aa23.23■■□□□ 1.31
VPS53-210ENST00000571456 ASGR1P07306 291 aa23.23■■□□□ 1.31
VPS53-210ENST00000571456 SFNP31947 248 aa23.23■■□□□ 1.31
VPS53-210ENST00000571456 ITGB3BPQ13352 177 aaPredicted RBP23.23■■□□□ 1.31
VPS53-210ENST00000571456 LRCH2Q5VUJ6 765 aa23.23■■□□□ 1.31
VPS53-210ENST00000571456 MICALL1Q8N3F8 863 aa23.23■■□□□ 1.31
VPS53-210ENST00000571456 TMEM199Q8N511 208 aa23.23■■□□□ 1.31
VPS53-210ENST00000571456 RDM1Q8NG50 284 aa23.23■■□□□ 1.31
VPS53-210ENST00000571456 ETNPPLQ8TBG4 499 aa23.23■■□□□ 1.31
VPS53-210ENST00000571456 KATNAL1Q9BW62 490 aa23.23■■□□□ 1.31
VPS53-210ENST00000571456 TEKT3Q9BXF9 490 aa23.23■■□□□ 1.31
VPS53-210ENST00000571456 DHX15O43143 795 aaKnown RBP23.22■■□□□ 1.31
VPS53-210ENST00000571456 ACRP10323 421 aa23.22■■□□□ 1.31
VPS53-210ENST00000571456 HSDL1Q3SXM5 330 aa23.22■■□□□ 1.31
VPS53-210ENST00000571456 ALYREFQ86V81 257 aaKnown RBP23.22■■□□□ 1.31
VPS53-210ENST00000571456 GPR20Q99678 358 aa23.22■■□□□ 1.31
VPS53-210ENST00000571456 MTG1Q9BT17 334 aaPredicted RBP23.22■■□□□ 1.31
VPS53-210ENST00000571456 MROH7Q68CQ1 1323 aa23.22■■□□□ 1.31
VPS53-210ENST00000571456 SCN10AQ9Y5Y9 1956 aa23.21■■□□□ 1.31
VPS53-210ENST00000571456 MYADML2A6NDP7 307 aa23.21■■□□□ 1.31
VPS53-210ENST00000571456 SLC37A4O43826 429 aa23.21■■□□□ 1.31
VPS53-210ENST00000571456 PSMD10O75832 226 aa23.21■■□□□ 1.31
VPS53-210ENST00000571456 JAK3P52333 1124 aa23.21■■□□□ 1.31
VPS53-210ENST00000571456 PURAQ00577 322 aaKnown RBP23.21■■□□□ 1.31
VPS53-210ENST00000571456 BEX3Q00994 111 aa23.21■■□□□ 1.31
VPS53-210ENST00000571456 CALCRLQ16602 461 aa23.21■■□□□ 1.31
VPS53-210ENST00000571456 HERVK_113Q902F9 699 aa23.21■■□□□ 1.31
VPS53-210ENST00000571456 TNPO1Q92973 898 aaKnown RBP23.21■■□□□ 1.31
VPS53-210ENST00000571456 EMSYQ7Z589 1322 aa23.2■■□□□ 1.3
VPS53-210ENST00000571456 GPR37L1O60883 481 aa23.2■■□□□ 1.3
VPS53-210ENST00000571456 ATG7O95352 703 aa23.2■■□□□ 1.3
VPS53-210ENST00000571456 SLC26A2P50443 739 aa23.2■■□□□ 1.3
VPS53-210ENST00000571456 MTIF3Q9H2K0 278 aaKnown RBP23.2■■□□□ 1.3
VPS53-210ENST00000571456 PKD2L1Q9P0L9 805 aa23.2■■□□□ 1.3
VPS53-210ENST00000571456 ZNF215Q9UL58 517 aaPredicted RBP23.2■■□□□ 1.3
VPS53-210ENST00000571456 CEP131Q9UPN4 1083 aa23.2■■□□□ 1.3
VPS53-210ENST00000571456 YBX2Q9Y2T7 364 aaKnown RBP23.2■■□□□ 1.3
VPS53-210ENST00000571456 MYH9P35579 1960 aaKnown RBP23.2■■□□□ 1.3
VPS53-210ENST00000571456 WDR64B1ANS9 1081 aa23.19■■□□□ 1.3
VPS53-210ENST00000571456 MYL3P08590 195 aa23.19■■□□□ 1.3
VPS53-210ENST00000571456 ZSCAN22P10073 491 aaPredicted RBP23.19■■□□□ 1.3
VPS53-210ENST00000571456 MCM7P33993 719 aa23.19■■□□□ 1.3
VPS53-210ENST00000571456 TOB1P50616 345 aaPredicted RBP23.19■■□□□ 1.3
VPS53-210ENST00000571456 ACTR2P61160 394 aa23.19■■□□□ 1.3
VPS53-210ENST00000571456 RESTQ13127 1097 aa23.19■■□□□ 1.3
VPS53-210ENST00000571456 SKIV2LQ15477 1246 aaKnown RBP23.19■■□□□ 1.3
VPS53-210ENST00000571456 MIS18BP1Q6P0N0 1132 aa23.19■■□□□ 1.3
VPS53-210ENST00000571456 POTEDQ86YR6 584 aa23.19■■□□□ 1.3
VPS53-210ENST00000571456 AZI2Q9H6S1 392 aa23.19■■□□□ 1.3
VPS53-210ENST00000571456 EIF4ENIF1Q9NRA8 985 aaKnown RBP23.19■■□□□ 1.3
VPS53-210ENST00000571456 A0A0U1RQG5 324 aaPredicted RBP23.18■■□□□ 1.3
VPS53-210ENST00000571456 F2P00734 622 aa23.18■■□□□ 1.3
VPS53-210ENST00000571456 ATP2B1P20020 1258 aa23.18■■□□□ 1.3
VPS53-210ENST00000571456 TCF7P36402 384 aaPredicted RBP23.18■■□□□ 1.3
VPS53-210ENST00000571456 PRPHP41219 470 aa23.18■■□□□ 1.3
VPS53-210ENST00000571456 PTPN11Q06124 597 aaPredicted RBP23.18■■□□□ 1.3
VPS53-210ENST00000571456 PPP2R5CQ13362 524 aa23.18■■□□□ 1.3
VPS53-210ENST00000571456 SPRYD3Q8NCJ5 442 aa23.18■■□□□ 1.3
VPS53-210ENST00000571456 MTMR9Q96QG7 549 aa23.18■■□□□ 1.3
VPS53-210ENST00000571456 SMARCAD1Q9H4L7 1026 aa23.18■■□□□ 1.3
VPS53-210ENST00000571456 PCDHA12Q9UN75 941 aa23.18■■□□□ 1.3
VPS53-210ENST00000571456 PCDHA10Q9Y5I2 948 aa23.18■■□□□ 1.3
VPS53-210ENST00000571456 MYH15Q9Y2K3 1946 aa23.18■■□□□ 1.3
VPS53-210ENST00000571456 BRWD1Q9NSI6 2320 aa23.17■■□□□ 1.3
VPS53-210ENST00000571456 GSTTP1A0A1W2PQM5 241 aa23.17■■□□□ 1.3
VPS53-210ENST00000571456 LGR5O75473 907 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms