RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 VSIG10LQ86VR7 867 aa21.06■□□□□ 0.96
CLK3-227ENST00000570296 FTHL17Q9BXU8 183 aa21.06■□□□□ 0.96
CLK3-227ENST00000570296 SMOC2Q9H3U7 446 aa21.06■□□□□ 0.96
CLK3-227ENST00000570296 NRCAMQ92823 1304 aa21.05■□□□□ 0.96
CLK3-227ENST00000570296 FSCN2O14926 492 aa21.05■□□□□ 0.96
CLK3-227ENST00000570296 HSD17B4P51659 736 aa21.05■□□□□ 0.96
CLK3-227ENST00000570296 GHRHRQ02643 423 aa21.05■□□□□ 0.96
CLK3-227ENST00000570296 ZMYM1Q5SVZ6 1142 aa21.05■□□□□ 0.96
CLK3-227ENST00000570296 UBA5Q9GZZ9 404 aa21.05■□□□□ 0.96
CLK3-227ENST00000570296 AAASQ9NRG9 546 aa21.05■□□□□ 0.96
CLK3-227ENST00000570296 TOMM22Q9NS69 142 aa21.05■□□□□ 0.96
CLK3-227ENST00000570296 SMARCA5O60264 1052 aaPredicted RBP21.04■□□□□ 0.96
CLK3-227ENST00000570296 CFBP00751 764 aa21.04■□□□□ 0.96
CLK3-227ENST00000570296 GOLGA8HP0CJ92 632 aa21.04■□□□□ 0.96
CLK3-227ENST00000570296 ERVFC1P60507 584 aa21.04■□□□□ 0.96
CLK3-227ENST00000570296 DTWD2Q8NBA8 298 aa21.04■□□□□ 0.96
CLK3-227ENST00000570296 FLCNQ8NFG4 579 aa21.04■□□□□ 0.96
CLK3-227ENST00000570296 RTP3Q9BQQ7 232 aa21.04■□□□□ 0.96
CLK3-227ENST00000570296 APOL5Q9BWW9 433 aa21.04■□□□□ 0.96
CLK3-227ENST00000570296 CPVLQ9H3G5 476 aa21.04■□□□□ 0.96
CLK3-227ENST00000570296 TPRNQ4KMQ1 711 aa21.03■□□□□ 0.96
CLK3-227ENST00000570296 RUFY4Q6ZNE9 571 aa21.03■□□□□ 0.96
CLK3-227ENST00000570296 STOX1Q6ZVD7 989 aa21.03■□□□□ 0.96
CLK3-227ENST00000570296 RTN4RL1Q86UN2 441 aaPredicted RBP21.03■□□□□ 0.96
CLK3-227ENST00000570296 ZDHHC14Q8IZN3 488 aa21.03■□□□□ 0.96
CLK3-227ENST00000570296 POMKQ9H5K3 350 aa21.03■□□□□ 0.96
CLK3-227ENST00000570296 ZBTB40Q9NUA8 1239 aa21.03■□□□□ 0.96
CLK3-227ENST00000570296 MAP3K20Q9NYL2 800 aaKnown RBP21.03■□□□□ 0.96
CLK3-227ENST00000570296 FNDC1Q4ZHG4 1894 aaPredicted RBP21.03■□□□□ 0.96
CLK3-227ENST00000570296 FGF18O76093 207 aa21.02■□□□□ 0.96
CLK3-227ENST00000570296 ITIH3Q06033 890 aa21.02■□□□□ 0.96
CLK3-227ENST00000570296 PGM5Q15124 567 aa21.02■□□□□ 0.96
CLK3-227ENST00000570296 QRICH1Q2TAL8 776 aa21.02■□□□□ 0.96
CLK3-227ENST00000570296 RRP12Q5JTH9 1297 aaKnown RBP21.02■□□□□ 0.96
CLK3-227ENST00000570296 CES5AQ6NT32 575 aa21.02■□□□□ 0.96
CLK3-227ENST00000570296 METTL7BQ6UX53 244 aa21.02■□□□□ 0.96
CLK3-227ENST00000570296 ADGRF4Q8IZF3 695 aa21.02■□□□□ 0.96
CLK3-227ENST00000570296 GPKOWQ92917 476 aaPredicted RBP eCLIP21.02■□□□□ 0.96
CLK3-227ENST00000570296 GPR20Q99678 358 aa21.02■□□□□ 0.96
CLK3-227ENST00000570296 SUPT16HQ9Y5B9 1047 aaKnown RBP21.02■□□□□ 0.96
CLK3-227ENST00000570296 SQORQ9Y6N5 450 aa21.02■□□□□ 0.96
CLK3-227ENST00000570296 DOCK5Q9H7D0 1870 aa21.02■□□□□ 0.96
CLK3-227ENST00000570296 FANCMQ8IYD8 2048 aa21.01■□□□□ 0.95
CLK3-227ENST00000570296 PI15O43692 258 aa21.01■□□□□ 0.95
CLK3-227ENST00000570296 ASGR2P07307 311 aa21.01■□□□□ 0.95
CLK3-227ENST00000570296 SCG2P13521 617 aa21.01■□□□□ 0.95
CLK3-227ENST00000570296 CD52P31358 61 aa21.01■□□□□ 0.95
CLK3-227ENST00000570296 TRIM50Q86XT4 487 aa21.01■□□□□ 0.95
CLK3-227ENST00000570296 ADAM7Q9H2U9 754 aa21.01■□□□□ 0.95
CLK3-227ENST00000570296 AGO3Q9H9G7 860 aaKnown RBP21.01■□□□□ 0.95
CLK3-227ENST00000570296 LZTS1Q9Y250 596 aa21.01■□□□□ 0.95
CLK3-227ENST00000570296 CDY2AQ9Y6F7 541 aa21.01■□□□□ 0.95
CLK3-227ENST00000570296 LOXHD1Q8IVV2 1947 aa21■□□□□ 0.95
CLK3-227ENST00000570296 RPLP2P05387 115 aaKnown RBP21■□□□□ 0.95
CLK3-227ENST00000570296 NPR3P17342 541 aa21■□□□□ 0.95
CLK3-227ENST00000570296 CCND2P30279 289 aa21■□□□□ 0.95
CLK3-227ENST00000570296 NEDD9Q14511 834 aa21■□□□□ 0.95
CLK3-227ENST00000570296 SPOUT1Q5T280 376 aaKnown RBP21■□□□□ 0.95
CLK3-227ENST00000570296 TSHZ3Q63HK5 1081 aa21■□□□□ 0.95
CLK3-227ENST00000570296 LLGL2Q6P1M3 1020 aa21■□□□□ 0.95
CLK3-227ENST00000570296 THNSL1Q8IYQ7 743 aa21■□□□□ 0.95
CLK3-227ENST00000570296 SAMD3Q8N6K7 520 aa21■□□□□ 0.95
CLK3-227ENST00000570296 TDRD5Q8NAT2 981 aaKnown RBP21■□□□□ 0.95
CLK3-227ENST00000570296 IL31RAQ8NI17 732 aa21■□□□□ 0.95
CLK3-227ENST00000570296 CYP2W1Q8TAV3 490 aa21■□□□□ 0.95
CLK3-227ENST00000570296 CASP10Q92851 521 aa21■□□□□ 0.95
CLK3-227ENST00000570296 HINFPQ9BQA5 517 aa21■□□□□ 0.95
CLK3-227ENST00000570296 BCAS3Q9H6U6 928 aa21■□□□□ 0.95
CLK3-227ENST00000570296 TMEM260Q9NX78 707 aa21■□□□□ 0.95
CLK3-227ENST00000570296 LRFN2Q9ULH4 789 aa21■□□□□ 0.95
CLK3-227ENST00000570296 OPLAHO14841 1288 aa20.99■□□□□ 0.95
CLK3-227ENST00000570296 MTHFRP42898 656 aa20.99■□□□□ 0.95
CLK3-227ENST00000570296 GATMP50440 423 aa20.99■□□□□ 0.95
CLK3-227ENST00000570296 ALX1Q15699 326 aa20.99■□□□□ 0.95
CLK3-227ENST00000570296 PLPP4Q5VZY2 271 aa20.99■□□□□ 0.95
CLK3-227ENST00000570296 PLCD3Q8N3E9 789 aa20.99■□□□□ 0.95
CLK3-227ENST00000570296 RUBCNQ92622 972 aa20.99■□□□□ 0.95
CLK3-227ENST00000570296 CDH22Q9UJ99 828 aa20.99■□□□□ 0.95
CLK3-227ENST00000570296 DDX19BQ9UMR2 479 aa20.99■□□□□ 0.95
CLK3-227ENST00000570296 GPR179Q6PRD1 2367 aa20.99■□□□□ 0.95
CLK3-227ENST00000570296 MRPS6P82932 125 aaKnown RBP20.98■□□□□ 0.95
CLK3-227ENST00000570296 ST3GAL2Q16842 350 aa20.98■□□□□ 0.95
CLK3-227ENST00000570296 GNPTABQ3T906 1256 aa20.98■□□□□ 0.95
CLK3-227ENST00000570296 NGRNQ9NPE2 291 aaKnown RBP20.98■□□□□ 0.95
CLK3-227ENST00000570296 LIMD1Q9UGP4 676 aa20.98■□□□□ 0.95
CLK3-227ENST00000570296 TUBE1Q9UJT0 475 aa20.98■□□□□ 0.95
CLK3-227ENST00000570296 USTQ9Y2C2 406 aa20.98■□□□□ 0.95
CLK3-227ENST00000570296 FAM208BQ5VWN6 2430 aa20.97■□□□□ 0.95
CLK3-227ENST00000570296 MBLAC1A4D2B0 266 aaPredicted RBP20.97■□□□□ 0.95
CLK3-227ENST00000570296 MS4A1P11836 297 aa20.97■□□□□ 0.95
CLK3-227ENST00000570296 RSPO4Q2I0M5 234 aaPredicted RBP20.97■□□□□ 0.95
CLK3-227ENST00000570296 UTP14CQ5TAP6 766 aaKnown RBP20.97■□□□□ 0.95
CLK3-227ENST00000570296 FAM43BQ6ZT52 329 aaPredicted RBP20.97■□□□□ 0.95
CLK3-227ENST00000570296 CYFIP1Q7L576 1253 aa20.97■□□□□ 0.95
CLK3-227ENST00000570296 COLGALT1Q8NBJ5 622 aa20.97■□□□□ 0.95
CLK3-227ENST00000570296 DNAJB3Q8WWF6 145 aa20.97■□□□□ 0.95
CLK3-227ENST00000570296 PUF60Q9UHX1 559 aaKnown RBP20.97■□□□□ 0.95
CLK3-227ENST00000570296 R4GN57 208 aa20.97■□□□□ 0.95
CLK3-227ENST00000570296 PPFIA1Q13136 1202 aa20.96■□□□□ 0.95
CLK3-227ENST00000570296 ASPRV1Q53RT3 343 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 199 ms