RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 PCDHA12Q9UN75 941 aa10.47□□□□□ -0.73
VPS35-211ENST00000569950 PCDHA10Q9Y5I2 948 aa10.47□□□□□ -0.73
VPS35-211ENST00000569950 SRPRBQ9Y5M8 271 aaKnown RBP10.47□□□□□ -0.73
VPS35-211ENST00000569950 A0A087X0B3 334 aa10.46□□□□□ -0.73
VPS35-211ENST00000569950 TMEM150BA6NC51 233 aa10.46□□□□□ -0.73
VPS35-211ENST00000569950 VWA3AA6NCI4 1184 aa10.46□□□□□ -0.73
VPS35-211ENST00000569950 WDR64B1ANS9 1081 aa10.46□□□□□ -0.73
VPS35-211ENST00000569950 ZBTB39O15060 712 aa10.46□□□□□ -0.73
VPS35-211ENST00000569950 SPTLC2O15270 562 aa10.46□□□□□ -0.73
VPS35-211ENST00000569950 PPP6R2O75170 966 aa10.46□□□□□ -0.73
VPS35-211ENST00000569950 SLITRK3O94933 977 aa10.46□□□□□ -0.73
VPS35-211ENST00000569950 CPT1AP50416 773 aa10.46□□□□□ -0.73
VPS35-211ENST00000569950 CDK7P50613 346 aa10.46□□□□□ -0.73
VPS35-211ENST00000569950 JAK3P52333 1124 aa10.46□□□□□ -0.73
VPS35-211ENST00000569950 PSMC6P62333 389 aa10.46□□□□□ -0.73
VPS35-211ENST00000569950 ADAM17P78536 824 aa10.46□□□□□ -0.73
VPS35-211ENST00000569950 PDIA5Q14554 519 aa10.46□□□□□ -0.73
VPS35-211ENST00000569950 SNX17Q15036 470 aa10.46□□□□□ -0.73
VPS35-211ENST00000569950 EPHA7Q15375 998 aa10.46□□□□□ -0.73
VPS35-211ENST00000569950 SHC4Q6S5L8 630 aa10.46□□□□□ -0.73
VPS35-211ENST00000569950 KCNK18Q7Z418 384 aa10.46□□□□□ -0.73
VPS35-211ENST00000569950 TNS4Q8IZW8 715 aa10.46□□□□□ -0.73
VPS35-211ENST00000569950 ANKLE1Q8NAG6 615 aa10.46□□□□□ -0.73
VPS35-211ENST00000569950 RDM1Q8NG50 284 aa10.46□□□□□ -0.73
VPS35-211ENST00000569950 ZNF396Q96N95 335 aaPredicted RBP10.46□□□□□ -0.73
VPS35-211ENST00000569950 PNMA5Q96PV4 448 aa10.46□□□□□ -0.73
VPS35-211ENST00000569950 EIF2AK1Q9BQI3 630 aaKnown RBP10.46□□□□□ -0.73
VPS35-211ENST00000569950 AP5M1Q9H0R1 490 aa10.46□□□□□ -0.73
VPS35-211ENST00000569950 CSRNP2Q9H175 543 aa10.46□□□□□ -0.73
VPS35-211ENST00000569950 RNPEPQ9H4A4 650 aa10.46□□□□□ -0.73
VPS35-211ENST00000569950 GDPD2Q9HCC8 539 aa10.46□□□□□ -0.73
VPS35-211ENST00000569950 PCDHA7Q9UN72 937 aa10.46□□□□□ -0.73
VPS35-211ENST00000569950 PDE4DIPQ5VU43 2346 aa10.46□□□□□ -0.74
VPS35-211ENST00000569950 A0A087WWV3 80 aa10.45□□□□□ -0.74
VPS35-211ENST00000569950 MOXD2PA6NHM9 499 aa10.45□□□□□ -0.74
VPS35-211ENST00000569950 LYPLA2O95372 231 aa10.45□□□□□ -0.74
VPS35-211ENST00000569950 BMP15O95972 392 aa10.45□□□□□ -0.74
VPS35-211ENST00000569950 MYL3P08590 195 aa10.45□□□□□ -0.74
VPS35-211ENST00000569950 SFNP31947 248 aa10.45□□□□□ -0.74
VPS35-211ENST00000569950 SOX10P56693 466 aa10.45□□□□□ -0.74
VPS35-211ENST00000569950 GRB10Q13322 594 aa10.45□□□□□ -0.74
VPS35-211ENST00000569950 PLCB4Q15147 1175 aa10.45□□□□□ -0.74
VPS35-211ENST00000569950 TARBP2Q15633 366 aaKnown RBP10.45□□□□□ -0.74
VPS35-211ENST00000569950 DGKDQ16760 1214 aa10.45□□□□□ -0.74
VPS35-211ENST00000569950 SPECC1Q5M775 1068 aa10.45□□□□□ -0.74
VPS35-211ENST00000569950 HYIQ5T013 277 aa10.45□□□□□ -0.74
VPS35-211ENST00000569950 MARCH8Q5T0T0 291 aa10.45□□□□□ -0.74
VPS35-211ENST00000569950 UTP14CQ5TAP6 766 aaKnown RBP10.45□□□□□ -0.74
VPS35-211ENST00000569950 NCAPH2Q6IBW4 605 aa10.45□□□□□ -0.74
VPS35-211ENST00000569950 SWSAP1Q6NVH7 229 aa10.45□□□□□ -0.74
VPS35-211ENST00000569950 DTHD1Q6ZMT9 781 aa10.45□□□□□ -0.74
VPS35-211ENST00000569950 ANO5Q75V66 913 aa10.45□□□□□ -0.74
VPS35-211ENST00000569950 PLPPR4Q7Z2D5 763 aa10.45□□□□□ -0.74
VPS35-211ENST00000569950 MIER3Q7Z3K6 550 aa10.45□□□□□ -0.74
VPS35-211ENST00000569950 RNF180Q86T96 592 aa10.45□□□□□ -0.74
VPS35-211ENST00000569950 CATSPER3Q86XQ3 398 aa10.45□□□□□ -0.74
VPS35-211ENST00000569950 ZNF579Q8NAF0 562 aaKnown RBP10.45□□□□□ -0.74
VPS35-211ENST00000569950 ARRDC4Q8NCT1 418 aa10.45□□□□□ -0.74
VPS35-211ENST00000569950 BANK1Q8NDB2 785 aa10.45□□□□□ -0.74
VPS35-211ENST00000569950 FERMT2Q96AC1 680 aa10.45□□□□□ -0.74
VPS35-211ENST00000569950 DYDC2Q96IM9 177 aa10.45□□□□□ -0.74
VPS35-211ENST00000569950 PAWRQ96IZ0 340 aaKnown RBP10.45□□□□□ -0.74
VPS35-211ENST00000569950 EPSTI1Q96J88 318 aa10.45□□□□□ -0.74
VPS35-211ENST00000569950 POLR3CQ9BUI4 534 aaPredicted RBP10.45□□□□□ -0.74
VPS35-211ENST00000569950 RANBP2P49792 3224 aaKnown RBP10.45□□□□□ -0.74
VPS35-211ENST00000569950 LTBP2Q14767 1821 aa10.44□□□□□ -0.74
VPS35-211ENST00000569950 FAM237AA0A1B0GTK4 181 aa10.44□□□□□ -0.74
VPS35-211ENST00000569950 POTEB3A0JP26 581 aa10.44□□□□□ -0.74
VPS35-211ENST00000569950 H3BRB1 525 aa10.44□□□□□ -0.74
VPS35-211ENST00000569950 NOP56O00567 594 aaKnown RBP10.44□□□□□ -0.74
VPS35-211ENST00000569950 BAG4O95429 457 aaKnown RBP10.44□□□□□ -0.74
VPS35-211ENST00000569950 TFRCP02786 760 aaKnown RBP10.44□□□□□ -0.74
VPS35-211ENST00000569950 PSAPP07602 524 aa10.44□□□□□ -0.74
VPS35-211ENST00000569950 RPA1P27694 616 aa10.44□□□□□ -0.74
VPS35-211ENST00000569950 LONP1P36776 959 aaKnown RBP10.44□□□□□ -0.74
VPS35-211ENST00000569950 PSEN2P49810 448 aa10.44□□□□□ -0.74
VPS35-211ENST00000569950 STAT5BP51692 787 aa10.44□□□□□ -0.74
VPS35-211ENST00000569950 KRT85P78386 507 aa10.44□□□□□ -0.74
VPS35-211ENST00000569950 CYP4A11Q02928 519 aa10.44□□□□□ -0.74
VPS35-211ENST00000569950 CTTNQ14247 550 aaKnown RBP10.44□□□□□ -0.74
VPS35-211ENST00000569950 MFSD10Q14728 455 aa10.44□□□□□ -0.74
VPS35-211ENST00000569950 NBPF20Q3BBV1 942 aa10.44□□□□□ -0.74
VPS35-211ENST00000569950 TMEM119Q4V9L6 283 aa10.44□□□□□ -0.74
VPS35-211ENST00000569950 NAALADL2Q58DX5 795 aa10.44□□□□□ -0.74
VPS35-211ENST00000569950 MIS18BP1Q6P0N0 1132 aa10.44□□□□□ -0.74
VPS35-211ENST00000569950 POTEBQ6S5H4 581 aa10.44□□□□□ -0.74
VPS35-211ENST00000569950 SESTD1Q86VW0 696 aa10.44□□□□□ -0.74
VPS35-211ENST00000569950 KRI1Q8N9T8 703 aaKnown RBP10.44□□□□□ -0.74
VPS35-211ENST00000569950 TMEM87AQ8NBN3 555 aa10.44□□□□□ -0.74
VPS35-211ENST00000569950 PCSK9Q8NBP7 692 aaKnown RBP10.44□□□□□ -0.74
VPS35-211ENST00000569950 ZBTB10Q96DT7 871 aa10.44□□□□□ -0.74
VPS35-211ENST00000569950 LXNQ9BS40 222 aa10.44□□□□□ -0.74
VPS35-211ENST00000569950 MTG1Q9BT17 334 aaPredicted RBP10.44□□□□□ -0.74
VPS35-211ENST00000569950 TMEM106CQ9BVX2 250 aa10.44□□□□□ -0.74
VPS35-211ENST00000569950 TUT1Q9H6E5 874 aaKnown RBP10.44□□□□□ -0.74
VPS35-211ENST00000569950 ZNF302Q9NR11 478 aa10.44□□□□□ -0.74
VPS35-211ENST00000569950 GABBR1Q9UBS5 961 aa10.44□□□□□ -0.74
VPS35-211ENST00000569950 LRWD1Q9UFC0 647 aa10.44□□□□□ -0.74
VPS35-211ENST00000569950 CEP131Q9UPN4 1083 aa10.44□□□□□ -0.74
VPS35-211ENST00000569950 TANC1Q9C0D5 1861 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms