RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 BRIP1Q9BX63 1249 aa12.4□□□□□ -0.42
CLN3-238ENST00000569430 TLR10Q9BXR5 811 aa12.4□□□□□ -0.42
CLN3-238ENST00000569430 NOP53Q9NZM5 478 aaKnown RBP12.4□□□□□ -0.42
CLN3-238ENST00000569430 C1orf167Q5SNV9 1468 aa12.4□□□□□ -0.42
CLN3-238ENST00000569430 JCADQ9P266 1359 aa12.4□□□□□ -0.42
CLN3-238ENST00000569430 CNTNAP5Q8WYK1 1306 aa12.4□□□□□ -0.43
CLN3-238ENST00000569430 ENO4A6NNW6 628 aa12.39□□□□□ -0.43
CLN3-238ENST00000569430 TRIM37O94972 964 aa12.39□□□□□ -0.43
CLN3-238ENST00000569430 SMTNP53814 917 aa12.39□□□□□ -0.43
CLN3-238ENST00000569430 NBPF9Q3BBW0 867 aa12.39□□□□□ -0.43
CLN3-238ENST00000569430 CROCCP2Q86T23 111 aa12.39□□□□□ -0.43
CLN3-238ENST00000569430 TPH2Q8IWU9 490 aa12.39□□□□□ -0.43
CLN3-238ENST00000569430 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.39□□□□□ -0.433e-6■□□□□ 10.1
CLN3-238ENST00000569430 BZW2Q9Y6E2 419 aaKnown RBP12.39□□□□□ -0.43
CLN3-238ENST00000569430 PNPLA7Q6ZV29 1317 aa12.39□□□□□ -0.43
CLN3-238ENST00000569430 DIAPH2O60879 1101 aa12.39□□□□□ -0.43
CLN3-238ENST00000569430 SMIM24O75264 130 aa12.39□□□□□ -0.43
CLN3-238ENST00000569430 SLC18A3Q16572 532 aa12.39□□□□□ -0.43
CLN3-238ENST00000569430 TSNAXIP1Q2TAA8 658 aa12.39□□□□□ -0.43
CLN3-238ENST00000569430 MUM1Q2TAK8 710 aa12.39□□□□□ -0.43
CLN3-238ENST00000569430 PPP4R3AQ6IN85 833 aa12.39□□□□□ -0.43
CLN3-238ENST00000569430 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.39□□□□□ -0.43
CLN3-238ENST00000569430 KIF2BQ8N4N8 673 aa12.39□□□□□ -0.43
CLN3-238ENST00000569430 PPFIBP2Q8ND30 876 aa12.39□□□□□ -0.43
CLN3-238ENST00000569430 TMEM47Q9BQJ4 181 aa12.39□□□□□ -0.43
CLN3-238ENST00000569430 ANKRD2Q9GZV1 360 aa12.39□□□□□ -0.43
CLN3-238ENST00000569430 USTQ9Y2C2 406 aa12.39□□□□□ -0.43
CLN3-238ENST00000569430 NFAT5O94916 1531 aa12.39□□□□□ -0.43
CLN3-238ENST00000569430 RIMBP2O15034 1052 aa12.39□□□□□ -0.43
CLN3-238ENST00000569430 KIF1CO43896 1103 aaKnown RBP12.39□□□□□ -0.43
CLN3-238ENST00000569430 KRT5P13647 590 aa12.39□□□□□ -0.43
CLN3-238ENST00000569430 ADCY8P40145 1251 aa12.39□□□□□ -0.43
CLN3-238ENST00000569430 TRADDQ15628 312 aa12.39□□□□□ -0.43
CLN3-238ENST00000569430 CYP4F22Q6NT55 531 aa12.39□□□□□ -0.43
CLN3-238ENST00000569430 ZNF449Q6P9G9 518 aa12.39□□□□□ -0.43
CLN3-238ENST00000569430 STMN2Q93045 179 aa12.39□□□□□ -0.43
CLN3-238ENST00000569430 IKBKGQ9Y6K9 419 aa12.39□□□□□ -0.43
CLN3-238ENST00000569430 AGPSO00116 658 aa12.38□□□□□ -0.43
CLN3-238ENST00000569430 HLA-DOAP06340 250 aa12.38□□□□□ -0.43
CLN3-238ENST00000569430 PLA2G4BP0C869 781 aa12.38□□□□□ -0.43
CLN3-238ENST00000569430 CHN1P15882 459 aa12.38□□□□□ -0.43
CLN3-238ENST00000569430 HHATQ5VTY9 493 aa12.38□□□□□ -0.43
CLN3-238ENST00000569430 TPTE2Q6XPS3 522 aa12.38□□□□□ -0.43
CLN3-238ENST00000569430 LRP10Q7Z4F1 713 aa12.38□□□□□ -0.43
CLN3-238ENST00000569430 USP38Q8NB14 1042 aa12.38□□□□□ -0.43
CLN3-238ENST00000569430 RAPGEF5Q92565 580 aa12.38□□□□□ -0.43
CLN3-238ENST00000569430 MCUR1Q96AQ8 359 aa12.38□□□□□ -0.43
CLN3-238ENST00000569430 VCPKMTQ9H867 229 aa12.38□□□□□ -0.43
CLN3-238ENST00000569430 EIF3BP55884 814 aaKnown RBP12.38□□□□□ -0.43
CLN3-238ENST00000569430 COASYQ13057 564 aa12.38□□□□□ -0.43
CLN3-238ENST00000569430 ZNF804AQ7Z570 1209 aa12.38□□□□□ -0.43
CLN3-238ENST00000569430 DGKHQ86XP1 1220 aa12.38□□□□□ -0.43
CLN3-238ENST00000569430 MSL3Q8N5Y2 521 aaKnown RBP12.38□□□□□ -0.43
CLN3-238ENST00000569430 ANKS1AQ92625 1134 aa12.38□□□□□ -0.43
CLN3-238ENST00000569430 DUSP9Q99956 384 aaKnown RBP12.38□□□□□ -0.43
CLN3-238ENST00000569430 PARP2Q9UGN5 583 aa12.38□□□□□ -0.43
CLN3-238ENST00000569430 FAM205AQ6ZU69 1335 aa12.38□□□□□ -0.43
CLN3-238ENST00000569430 CCDC160A6NGH7 325 aa12.38□□□□□ -0.43
CLN3-238ENST00000569430 ZNF233A6NK53 670 aa12.38□□□□□ -0.43
CLN3-238ENST00000569430 TBC1D10BQ4KMP7 808 aaPredicted RBP12.38□□□□□ -0.43
CLN3-238ENST00000569430 VPS52Q8N1B4 723 aa12.38□□□□□ -0.43
CLN3-238ENST00000569430 WDR66Q8TBY9 1149 aa12.38□□□□□ -0.43
CLN3-238ENST00000569430 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.38□□□□□ -0.43
CLN3-238ENST00000569430 TPX2Q9ULW0 747 aaKnown RBP12.38□□□□□ -0.43
CLN3-238ENST00000569430 WDR17Q8IZU2 1322 aa12.38□□□□□ -0.43
CLN3-238ENST00000569430 SSU72P8A0A1W2PR75 194 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 GRID2IPA4D2P6 1211 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 EPHB6O15197 1021 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 PDHA1P08559 390 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 SEC23AQ15436 765 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 DDB1Q16531 1140 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 PPP2R5EQ16537 467 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 C6orf163Q5TEZ5 329 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 KLHDC7AQ5VTJ3 777 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 IRF2BP1Q8IU81 584 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 GLYCTKQ8IVS8 523 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 TAB3Q8N5C8 712 aaPredicted RBP12.37□□□□□ -0.43
CLN3-238ENST00000569430 SPATA20Q8TB22 786 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 XPO6Q96QU8 1125 aaKnown RBP12.37□□□□□ -0.43
CLN3-238ENST00000569430 PRMT1Q99873 361 aaKnown RBP12.37□□□□□ -0.43
CLN3-238ENST00000569430 BARHL2Q9NY43 387 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 TMOD4Q9NZQ9 345 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 PVALEFA0A1B0GWK0 134 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 POC1B-GALNT4F8VUJ3 575 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 PMS2P54278 862 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 TMEM132AQ24JP5 1023 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 GNPTABQ3T906 1256 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 TMED8Q6PL24 325 aaPredicted RBP12.37□□□□□ -0.43
CLN3-238ENST00000569430 BRINP3Q76B58 766 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 PHLDB2Q86SQ0 1253 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 TEX2Q8IWB9 1127 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 NSMCE1Q8WV22 266 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 SEMA6BQ9H3T3 888 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 DBR1Q9UK59 544 aaKnown RBP12.37□□□□□ -0.43
CLN3-238ENST00000569430 BCS1LQ9Y276 419 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 NPHP3-ACAD11A0A0J9YXS1 232 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 DDX39AO00148 427 aaKnown RBP12.37□□□□□ -0.43
CLN3-238ENST00000569430 SLC9A1P19634 815 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 FGFR4P22455 802 aa12.37□□□□□ -0.43
CLN3-238ENST00000569430 SCTRP47872 440 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms