RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 ARP10275 920 aa18.37■□□□□ 0.53
CLN3-229ENST00000567963 CLK2P49760 499 aaKnown RBP18.37■□□□□ 0.53
CLN3-229ENST00000567963 MGAT3Q09327 533 aa18.37■□□□□ 0.53
CLN3-229ENST00000567963 CEP55Q53EZ4 464 aa18.37■□□□□ 0.53
CLN3-229ENST00000567963 RSPH3Q86UC2 560 aa18.37■□□□□ 0.53
CLN3-229ENST00000567963 FBXO22Q8NEZ5 403 aa18.37■□□□□ 0.53
CLN3-229ENST00000567963 YME1L1Q96TA2 773 aa18.37■□□□□ 0.53
CLN3-229ENST00000567963 ANO3Q9BYT9 981 aa18.37■□□□□ 0.53
CLN3-229ENST00000567963 GLT8D2Q9H1C3 349 aa18.37■□□□□ 0.53
CLN3-229ENST00000567963 NFASCO94856 1347 aa18.37■□□□□ 0.53
CLN3-229ENST00000567963 GHRP10912 638 aa18.36■□□□□ 0.53
CLN3-229ENST00000567963 INSRRP14616 1297 aa18.36■□□□□ 0.53
CLN3-229ENST00000567963 ADD1P35611 737 aaKnown RBP18.36■□□□□ 0.53
CLN3-229ENST00000567963 AP3B2Q13367 1082 aa18.36■□□□□ 0.53
CLN3-229ENST00000567963 DNAJB3Q8WWF6 145 aa18.36■□□□□ 0.53
CLN3-229ENST00000567963 KCNB2Q92953 911 aa18.36■□□□□ 0.53
CLN3-229ENST00000567963 NECAB3Q96P71 396 aaPredicted RBP18.36■□□□□ 0.53
CLN3-229ENST00000567963 SDF4Q9BRK5 362 aa18.36■□□□□ 0.53
CLN3-229ENST00000567963 AZI2Q9H6S1 392 aa18.36■□□□□ 0.53
CLN3-229ENST00000567963 TMEM260Q9NX78 707 aa18.36■□□□□ 0.53
CLN3-229ENST00000567963 RRN3P2A6NIE6 340 aa18.35■□□□□ 0.53
CLN3-229ENST00000567963 MEIS1O00470 390 aa18.35■□□□□ 0.53
CLN3-229ENST00000567963 CPA1P15085 419 aa18.35■□□□□ 0.53
CLN3-229ENST00000567963 SREBF1P36956 1147 aa18.35■□□□□ 0.53
CLN3-229ENST00000567963 ACTR2P61160 394 aa18.35■□□□□ 0.53
CLN3-229ENST00000567963 IGBP1P78318 339 aa18.35■□□□□ 0.53
CLN3-229ENST00000567963 FGD1P98174 961 aa18.35■□□□□ 0.53
CLN3-229ENST00000567963 LPIN1Q14693 890 aa18.35■□□□□ 0.53
CLN3-229ENST00000567963 EPC2Q52LR7 807 aa18.35■□□□□ 0.53
CLN3-229ENST00000567963 PLPPR4Q7Z2D5 763 aa18.35■□□□□ 0.53
CLN3-229ENST00000567963 TNPO1Q92973 898 aaKnown RBP18.35■□□□□ 0.53
CLN3-229ENST00000567963 SAMD11Q96NU1 681 aa18.35■□□□□ 0.53
CLN3-229ENST00000567963 AGO4Q9HCK5 861 aaKnown RBP18.35■□□□□ 0.53
CLN3-229ENST00000567963 NAP1L2Q9ULW6 460 aaPredicted RBP18.35■□□□□ 0.53
CLN3-229ENST00000567963 NCOR1O75376 2440 aa18.34■□□□□ 0.53
CLN3-229ENST00000567963 ATG7O95352 703 aa18.34■□□□□ 0.53
CLN3-229ENST00000567963 METAP2P50579 478 aaKnown RBP eCLIP18.34■□□□□ 0.53
CLN3-229ENST00000567963 STAT5BP51692 787 aa18.34■□□□□ 0.53
CLN3-229ENST00000567963 ITGB3BPQ13352 177 aaPredicted RBP18.34■□□□□ 0.53
CLN3-229ENST00000567963 PFKFB3Q16875 520 aaPredicted RBP18.34■□□□□ 0.53
CLN3-229ENST00000567963 FBXO47Q5MNV8 452 aa18.34■□□□□ 0.53
CLN3-229ENST00000567963 Q6ZUG5 572 aa18.34■□□□□ 0.53
CLN3-229ENST00000567963 ZBTB10Q96DT7 871 aa18.34■□□□□ 0.53
CLN3-229ENST00000567963 CCDC196A0A1B0GTZ2 297 aa18.33■□□□□ 0.53
CLN3-229ENST00000567963 RPLP2P05387 115 aaKnown RBP18.33■□□□□ 0.53
CLN3-229ENST00000567963 HSPA4P34932 840 aa18.33■□□□□ 0.53
CLN3-229ENST00000567963 APOBRQ0VD83 1088 aa18.33■□□□□ 0.53
CLN3-229ENST00000567963 PLCB4Q15147 1175 aa18.33■□□□□ 0.53
CLN3-229ENST00000567963 CDY2AQ9Y6F7 541 aa18.33■□□□□ 0.53
CLN3-229ENST00000567963 COL4A6Q14031 1691 aa18.33■□□□□ 0.53
CLN3-229ENST00000567963 BDP1A6H8Y1 2624 aa18.33■□□□□ 0.52
CLN3-229ENST00000567963 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP18.33■□□□□ 0.52
CLN3-229ENST00000567963 H3BNC9 293 aa18.33■□□□□ 0.52
CLN3-229ENST00000567963 ENPP3O14638 875 aa18.33■□□□□ 0.52
CLN3-229ENST00000567963 SCG2P13521 617 aa18.33■□□□□ 0.52
CLN3-229ENST00000567963 ZNF76P36508 570 aa18.33■□□□□ 0.52
CLN3-229ENST00000567963 MRPS6P82932 125 aaKnown RBP18.33■□□□□ 0.52
CLN3-229ENST00000567963 IER5Q5VY09 327 aa18.33■□□□□ 0.52
CLN3-229ENST00000567963 NIPA1Q7RTP0 329 aa18.33■□□□□ 0.52
CLN3-229ENST00000567963 TMEM192Q8IY95 271 aa18.33■□□□□ 0.52
CLN3-229ENST00000567963 BRF1Q92994 677 aa18.33■□□□□ 0.52
CLN3-229ENST00000567963 IL17RAQ96F46 866 aa18.33■□□□□ 0.52
CLN3-229ENST00000567963 JAKMIP1Q96N16 626 aaKnown RBP18.33■□□□□ 0.52
CLN3-229ENST00000567963 TRPC6Q9Y210 931 aa18.33■□□□□ 0.52
CLN3-229ENST00000567963 SNX14Q9Y5W7 946 aa18.33■□□□□ 0.52
CLN3-229ENST00000567963 IGKV6D-21A0A0A0MT36 114 aa18.32■□□□□ 0.52
CLN3-229ENST00000567963 FAM86B1E9PN63 330 aa18.32■□□□□ 0.52
CLN3-229ENST00000567963 FAM86B2P0C5J1 330 aa18.32■□□□□ 0.52
CLN3-229ENST00000567963 JAKMIP3Q5VZ66 844 aa18.32■□□□□ 0.52
CLN3-229ENST00000567963 TSHZ1Q6ZSZ6 1077 aa18.32■□□□□ 0.52
CLN3-229ENST00000567963 FBXL16Q8N461 479 aa18.32■□□□□ 0.52
CLN3-229ENST00000567963 CRYGNQ8WXF5 182 aa18.32■□□□□ 0.52
CLN3-229ENST00000567963 MRPL38Q96DV4 380 aaKnown RBP18.32■□□□□ 0.52
CLN3-229ENST00000567963 ZMYND12Q9H0C1 365 aa18.32■□□□□ 0.52
CLN3-229ENST00000567963 FAM49AQ9H0Q0 323 aaPredicted RBP18.32■□□□□ 0.52
CLN3-229ENST00000567963 PCDHA2Q9Y5H9 948 aa18.32■□□□□ 0.52
CLN3-229ENST00000567963 SQORQ9Y6N5 450 aa18.32■□□□□ 0.52
CLN3-229ENST00000567963 NLRC5Q86WI3 1866 aa18.32■□□□□ 0.52
CLN3-229ENST00000567963 POTEB3A0JP26 581 aa18.31■□□□□ 0.52
CLN3-229ENST00000567963 CYP3A4P08684 503 aa18.31■□□□□ 0.52
CLN3-229ENST00000567963 SLC26A2P50443 739 aa18.31■□□□□ 0.52
CLN3-229ENST00000567963 GPM6BQ13491 265 aa18.31■□□□□ 0.52
CLN3-229ENST00000567963 PKN1Q16512 942 aa18.31■□□□□ 0.52
CLN3-229ENST00000567963 PTPROQ16827 1216 aa18.31■□□□□ 0.52
CLN3-229ENST00000567963 BLOC1S2Q6QNY1 142 aa18.31■□□□□ 0.52
CLN3-229ENST00000567963 POTEBQ6S5H4 581 aa18.31■□□□□ 0.52
CLN3-229ENST00000567963 ABHD15Q6UXT9 468 aa18.31■□□□□ 0.52
CLN3-229ENST00000567963 TRAPPC12Q8WVT3 735 aa18.31■□□□□ 0.52
CLN3-229ENST00000567963 AGO3Q9H9G7 860 aaKnown RBP18.31■□□□□ 0.52
CLN3-229ENST00000567963 IGLV3-22A0A075B6J6 115 aa18.3■□□□□ 0.52
CLN3-229ENST00000567963 ESYT2A0FGR8 921 aa18.3■□□□□ 0.52
CLN3-229ENST00000567963 ADAMTS3O15072 1205 aa18.3■□□□□ 0.52
CLN3-229ENST00000567963 DHX15O43143 795 aaKnown RBP18.3■□□□□ 0.52
CLN3-229ENST00000567963 PRPF3O43395 683 aaKnown RBP18.3■□□□□ 0.52
CLN3-229ENST00000567963 CCNE2O96020 404 aa18.3■□□□□ 0.52
CLN3-229ENST00000567963 PLA2G4DQ86XP0 818 aa18.3■□□□□ 0.52
CLN3-229ENST00000567963 FIBCD1Q8N539 461 aa18.3■□□□□ 0.52
CLN3-229ENST00000567963 AGXT2Q9BYV1 514 aa18.3■□□□□ 0.52
CLN3-229ENST00000567963 UBE2ZQ9H832 354 aaPredicted RBP18.3■□□□□ 0.52
CLN3-229ENST00000567963 RC3H2Q9HBD1 1191 aaKnown RBP18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms