RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 MSLNLQ96KJ4 702 aa13.01□□□□□ -0.33
CLN3-226ENST00000567160 PHF7Q9BWX1 381 aaPredicted RBP13.01□□□□□ -0.33
CLN3-226ENST00000567160 SLKQ9H2G2 1235 aaPredicted RBP13.01□□□□□ -0.33
CLN3-226ENST00000567160 GPCPD1Q9NPB8 672 aa13.01□□□□□ -0.33
CLN3-226ENST00000567160 MYH7BA7E2Y1 1941 aa13.01□□□□□ -0.33
CLN3-226ENST00000567160 DCHS1Q96JQ0 3298 aa13□□□□□ -0.33
CLN3-226ENST00000567160 HAS3O00219 553 aa13□□□□□ -0.33
CLN3-226ENST00000567160 LINC01565O15544 149 aa13□□□□□ -0.33
CLN3-226ENST00000567160 GALR2O43603 387 aaPredicted RBP13□□□□□ -0.33
CLN3-226ENST00000567160 CAND2O75155 1236 aa13□□□□□ -0.33
CLN3-226ENST00000567160 PARP1P09874 1014 aaKnown RBP13□□□□□ -0.33
CLN3-226ENST00000567160 ZNF286BP0CG31 522 aa13□□□□□ -0.33
CLN3-226ENST00000567160 CALM1P0DP23 149 aa13□□□□□ -0.33
CLN3-226ENST00000567160 CALM2P0DP24 149 aa13□□□□□ -0.33
CLN3-226ENST00000567160 CALM3P0DP25 149 aa13□□□□□ -0.33
CLN3-226ENST00000567160 ICAM3P32942 547 aa13□□□□□ -0.33
CLN3-226ENST00000567160 SLC16A2P36021 539 aa13□□□□□ -0.33
CLN3-226ENST00000567160 NBL1P41271 181 aa13□□□□□ -0.33
CLN3-226ENST00000567160 MCM2P49736 904 aa13□□□□□ -0.33
CLN3-226ENST00000567160 COASYQ13057 564 aa13□□□□□ -0.33
CLN3-226ENST00000567160 LAMC2Q13753 1193 aa13□□□□□ -0.33
CLN3-226ENST00000567160 GRM4Q14833 912 aa13□□□□□ -0.33
CLN3-226ENST00000567160 RTN1Q16799 776 aa13□□□□□ -0.33
CLN3-226ENST00000567160 MCTP2Q6DN12 878 aa13□□□□□ -0.33
CLN3-226ENST00000567160 HSCBQ8IWL3 235 aa13□□□□□ -0.33
CLN3-226ENST00000567160 FANCBQ8NB91 859 aa13□□□□□ -0.33
CLN3-226ENST00000567160 ZNF274Q96GC6 653 aaPredicted RBP13□□□□□ -0.33
CLN3-226ENST00000567160 ZSCAN31Q96LW9 406 aaPredicted RBP13□□□□□ -0.33
CLN3-226ENST00000567160 PLVAPQ9BX97 442 aa13□□□□□ -0.33
CLN3-226ENST00000567160 MAF1Q9H063 256 aa13□□□□□ -0.33
CLN3-226ENST00000567160 NCOA5Q9HCD5 579 aaKnown RBP13□□□□□ -0.33
CLN3-226ENST00000567160 ADGRA3Q8IWK6 1321 aa12.99□□□□□ -0.33
CLN3-226ENST00000567160 PFKFB2O60825 505 aa12.99□□□□□ -0.33
CLN3-226ENST00000567160 CDC27P30260 824 aa12.99□□□□□ -0.33
CLN3-226ENST00000567160 GTF2F1P35269 517 aaKnown RBP eCLIP12.99□□□□□ -0.33
CLN3-226ENST00000567160 ZNF200P98182 395 aaPredicted RBP12.99□□□□□ -0.33
CLN3-226ENST00000567160 ZNF543Q08ER8 600 aa12.99□□□□□ -0.33
CLN3-226ENST00000567160 STXBP2Q15833 593 aa12.99□□□□□ -0.33
CLN3-226ENST00000567160 TTBK2Q6IQ55 1244 aa12.99□□□□□ -0.33
CLN3-226ENST00000567160 CCDC83Q8IWF9 413 aa12.99□□□□□ -0.33
CLN3-226ENST00000567160 STAG2Q8N3U4 1231 aa12.99□□□□□ -0.33
CLN3-226ENST00000567160 EFHBQ8N7U6 833 aa12.99□□□□□ -0.33
CLN3-226ENST00000567160 RGS22Q8NE09 1264 aa12.99□□□□□ -0.33
CLN3-226ENST00000567160 NKD2Q969F2 451 aaPredicted RBP12.99□□□□□ -0.33
CLN3-226ENST00000567160 SNX21Q969T3 373 aa12.99□□□□□ -0.33
CLN3-226ENST00000567160 TMX3Q96JJ7 454 aa12.99□□□□□ -0.33
CLN3-226ENST00000567160 RPGRIP1Q96KN7 1286 aa12.99□□□□□ -0.33
CLN3-226ENST00000567160 CPVLQ9H3G5 476 aa12.99□□□□□ -0.33
CLN3-226ENST00000567160 MAD2L2Q9UI95 211 aa12.99□□□□□ -0.33
CLN3-226ENST00000567160 RBM19Q9Y4C8 960 aaKnown RBP12.99□□□□□ -0.33
CLN3-226ENST00000567160 NID2Q14112 1375 aa12.98□□□□□ -0.33
CLN3-226ENST00000567160 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.98□□□□□ -0.33
CLN3-226ENST00000567160 PALM3A6NDB9 673 aaPredicted RBP12.98□□□□□ -0.33
CLN3-226ENST00000567160 K7ELQ4 463 aaPredicted RBP12.98□□□□□ -0.33
CLN3-226ENST00000567160 DTNBO60941 627 aa12.98□□□□□ -0.33
CLN3-226ENST00000567160 CSPG5O95196 566 aa12.98□□□□□ -0.33
CLN3-226ENST00000567160 PLEKHA8P1O95397 391 aa12.98□□□□□ -0.33
CLN3-226ENST00000567160 SNHG28P0DPA3 235 aa12.98□□□□□ -0.33
CLN3-226ENST00000567160 KIF5BP33176 963 aa12.98□□□□□ -0.33
CLN3-226ENST00000567160 ANP32AP39687 249 aaKnown RBP12.98□□□□□ -0.33
CLN3-226ENST00000567160 RCAN1P53805 252 aa12.98□□□□□ -0.33
CLN3-226ENST00000567160 SCRN1Q12765 414 aa12.98□□□□□ -0.33
CLN3-226ENST00000567160 PTPN21Q16825 1174 aa12.98□□□□□ -0.33
CLN3-226ENST00000567160 ASPRV1Q53RT3 343 aa12.98□□□□□ -0.33
CLN3-226ENST00000567160 ZBTB33Q86T24 672 aa12.98□□□□□ -0.33
CLN3-226ENST00000567160 CMTR1Q8N1G2 835 aaKnown RBP12.98□□□□□ -0.33
CLN3-226ENST00000567160 NSUN6Q8TEA1 469 aaKnown RBP12.98□□□□□ -0.33
CLN3-226ENST00000567160 CLP1Q92989 425 aaKnown RBP12.98□□□□□ -0.33
CLN3-226ENST00000567160 ATP6V0A1Q93050 837 aa12.98□□□□□ -0.33
CLN3-226ENST00000567160 IWS1Q96ST2 819 aa12.98□□□□□ -0.33
CLN3-226ENST00000567160 MAP3K14Q99558 947 aa12.98□□□□□ -0.33
CLN3-226ENST00000567160 UBA5Q9GZZ9 404 aa12.98□□□□□ -0.33
CLN3-226ENST00000567160 SH2B1Q9NRF2 756 aaPredicted RBP12.98□□□□□ -0.33
CLN3-226ENST00000567160 USP15Q9Y4E8 981 aaPredicted RBP12.98□□□□□ -0.33
CLN3-226ENST00000567160 GVINP1Q7Z2Y8 2422 aa12.98□□□□□ -0.33
CLN3-226ENST00000567160 FSD2A1L4K1 749 aa12.97□□□□□ -0.33
CLN3-226ENST00000567160 C17orf102A2RUQ5 167 aa12.97□□□□□ -0.33
CLN3-226ENST00000567160 KLRF2D3W0D1 207 aa12.97□□□□□ -0.33
CLN3-226ENST00000567160 DHX16O60231 1041 aaKnown RBP12.97□□□□□ -0.33
CLN3-226ENST00000567160 PPFIA4O75335 1185 aa12.97□□□□□ -0.33
CLN3-226ENST00000567160 ATF7P17544 494 aaPredicted RBP12.97□□□□□ -0.33
CLN3-226ENST00000567160 ADD1P35611 737 aaKnown RBP12.97□□□□□ -0.33
CLN3-226ENST00000567160 ST3GAL1Q11201 340 aa12.97□□□□□ -0.33
CLN3-226ENST00000567160 NAALADL2Q58DX5 795 aa12.97□□□□□ -0.33
CLN3-226ENST00000567160 GPATCH4Q5T3I0 446 aaKnown RBP12.97□□□□□ -0.33
CLN3-226ENST00000567160 CCDC82Q8N4S0 544 aa12.97□□□□□ -0.33
CLN3-226ENST00000567160 PIBF1Q8WXW3 757 aa12.97□□□□□ -0.33
CLN3-226ENST00000567160 P2RX5Q93086 422 aa12.97□□□□□ -0.33
CLN3-226ENST00000567160 GTF3C6Q969F1 213 aa12.97□□□□□ -0.33
CLN3-226ENST00000567160 RIPOR3Q96MK2 946 aa12.97□□□□□ -0.33
CLN3-226ENST00000567160 FAM217BQ9NTX9 383 aaPredicted RBP12.97□□□□□ -0.33
CLN3-226ENST00000567160 RBM28Q9NW13 759 aaKnown RBP12.97□□□□□ -0.33
CLN3-226ENST00000567160 CLEC1BQ9P126 229 aa12.97□□□□□ -0.33
CLN3-226ENST00000567160 DDX41Q9UJV9 622 aaKnown RBP12.97□□□□□ -0.33
CLN3-226ENST00000567160 MRVI1Q9Y6F6 885 aa12.97□□□□□ -0.33
CLN3-226ENST00000567160 CCDC196A0A1B0GTZ2 297 aa12.96□□□□□ -0.33
CLN3-226ENST00000567160 CPLX1O14810 134 aa12.96□□□□□ -0.33
CLN3-226ENST00000567160 PPFIA3O75145 1194 aa12.96□□□□□ -0.33
CLN3-226ENST00000567160 CTSHP09668 335 aa12.96□□□□□ -0.33
CLN3-226ENST00000567160 HOXD8P13378 290 aaPredicted RBP12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms