RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 STAT5BP51692 787 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 PLCB4Q15147 1175 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 MIS18BP1Q6P0N0 1132 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 SESTD1Q86VW0 696 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 C7orf31Q8N865 590 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 ZBTB10Q96DT7 871 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 ZNF302Q9NR11 478 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 EIF4ENIF1Q9NRA8 985 aaKnown RBP22.06■■□□□ 1.12
CLN3-225ENST00000566824 SETD4Q9NVD3 440 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 GABBR1Q9UBS5 961 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 GTF2IRD1Q9UHL9 959 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 TBX21Q9UL17 535 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 SAMM50Q9Y512 469 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 PCDHA10Q9Y5I2 948 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 MYH15Q9Y2K3 1946 aa22.05■■□□□ 1.12
CLN3-225ENST00000566824 ZNF862O60290 1169 aa22.05■■□□□ 1.12
CLN3-225ENST00000566824 MARCH6O60337 910 aa22.05■■□□□ 1.12
CLN3-225ENST00000566824 PSAPP07602 524 aa22.05■■□□□ 1.12
CLN3-225ENST00000566824 PPP2R5CQ13362 524 aa22.05■■□□□ 1.12
CLN3-225ENST00000566824 FOXD4L5Q5VV16 416 aaPredicted RBP22.05■■□□□ 1.12
CLN3-225ENST00000566824 PLPPR4Q7Z2D5 763 aa22.05■■□□□ 1.12
CLN3-225ENST00000566824 MIER3Q7Z3K6 550 aa22.05■■□□□ 1.12
CLN3-225ENST00000566824 SMAP1Q8IYB5 467 aaPredicted RBP22.05■■□□□ 1.12
CLN3-225ENST00000566824 AFAP1L1Q8TED9 768 aa22.05■■□□□ 1.12
CLN3-225ENST00000566824 FOXD4L4Q8WXT5 416 aaPredicted RBP22.05■■□□□ 1.12
CLN3-225ENST00000566824 WNT8BQ93098 351 aa22.05■■□□□ 1.12
CLN3-225ENST00000566824 AZI2Q9H6S1 392 aa22.05■■□□□ 1.12
CLN3-225ENST00000566824 ERAP1Q9NZ08 941 aa22.05■■□□□ 1.12
CLN3-225ENST00000566824 ZNF215Q9UL58 517 aaPredicted RBP22.05■■□□□ 1.12
CLN3-225ENST00000566824 UMODL1Q5DID0 1318 aa22.04■■□□□ 1.12
CLN3-225ENST00000566824 MROH7Q68CQ1 1323 aa22.04■■□□□ 1.12
CLN3-225ENST00000566824 HOXC8P31273 242 aa22.04■■□□□ 1.12
CLN3-225ENST00000566824 PTPN11Q06124 597 aaPredicted RBP22.04■■□□□ 1.12
CLN3-225ENST00000566824 NCAPH2Q6IBW4 605 aa22.04■■□□□ 1.12
CLN3-225ENST00000566824 SLFN12Q8IYM2 578 aa22.04■■□□□ 1.12
CLN3-225ENST00000566824 DHX38Q92620 1227 aaKnown RBP22.04■■□□□ 1.12
CLN3-225ENST00000566824 FTOQ9C0B1 505 aaKnown RBP eCLIP22.04■■□□□ 1.12
CLN3-225ENST00000566824 TTC12Q9H892 705 aaPredicted RBP22.04■■□□□ 1.12
CLN3-225ENST00000566824 TMEM39AQ9NV64 488 aa22.04■■□□□ 1.12
CLN3-225ENST00000566824 MAFBQ9Y5Q3 323 aaPredicted RBP22.04■■□□□ 1.12
CLN3-225ENST00000566824 NR2E3Q9Y5X4 410 aa22.04■■□□□ 1.12
CLN3-225ENST00000566824 IGSF9BQ9UPX0 1349 aa22.03■■□□□ 1.12
CLN3-225ENST00000566824 KIAA0355O15063 1070 aa22.03■■□□□ 1.12
CLN3-225ENST00000566824 BAG4O95429 457 aaKnown RBP22.03■■□□□ 1.12
CLN3-225ENST00000566824 OR52Z1P0C646 297 aa22.03■■□□□ 1.12
CLN3-225ENST00000566824 JAK3P52333 1124 aa22.03■■□□□ 1.12
CLN3-225ENST00000566824 PTGDRQ13258 359 aa22.03■■□□□ 1.12
CLN3-225ENST00000566824 IL17AQ16552 155 aa22.03■■□□□ 1.12
CLN3-225ENST00000566824 PTGISQ16647 500 aa22.03■■□□□ 1.12
CLN3-225ENST00000566824 RILPL1Q5EBL4 403 aa22.03■■□□□ 1.12
CLN3-225ENST00000566824 PDXDC2PQ6P474 469 aa22.03■■□□□ 1.12
CLN3-225ENST00000566824 TRMT1LQ7Z2T5 733 aaKnown RBP22.03■■□□□ 1.12
CLN3-225ENST00000566824 TRAPPC12Q8WVT3 735 aa22.03■■□□□ 1.12
CLN3-225ENST00000566824 TCEAL9Q9UHQ7 104 aa22.03■■□□□ 1.12
CLN3-225ENST00000566824 TLR3O15455 904 aaKnown RBP22.02■■□□□ 1.12
CLN3-225ENST00000566824 TREHO43280 583 aa22.02■■□□□ 1.12
CLN3-225ENST00000566824 SFNP31947 248 aa22.02■■□□□ 1.12
CLN3-225ENST00000566824 ADAM17P78536 824 aa22.02■■□□□ 1.12
CLN3-225ENST00000566824 ORC2Q13416 577 aaPredicted RBP22.02■■□□□ 1.12
CLN3-225ENST00000566824 MARCH8Q5T0T0 291 aa22.02■■□□□ 1.12
CLN3-225ENST00000566824 FAM160B1Q5W0V3 765 aa22.02■■□□□ 1.12
CLN3-225ENST00000566824 BRAPQ7Z569 592 aa22.02■■□□□ 1.12
CLN3-225ENST00000566824 BANK1Q8NDB2 785 aa22.02■■□□□ 1.12
CLN3-225ENST00000566824 LMBR1Q8WVP7 490 aa22.02■■□□□ 1.12
CLN3-225ENST00000566824 SEZ6LQ9BYH1 1024 aa22.02■■□□□ 1.12
CLN3-225ENST00000566824 WRAP73Q9P2S5 460 aaPredicted RBP22.02■■□□□ 1.12
CLN3-225ENST00000566824 PCDHA12Q9UN75 941 aa22.02■■□□□ 1.12
CLN3-225ENST00000566824 SCN5AQ14524 2016 aa22.01■■□□□ 1.11
CLN3-225ENST00000566824 C17orf102A2RUQ5 167 aa22.01■■□□□ 1.11
CLN3-225ENST00000566824 POTEMA6NI47 508 aa22.01■■□□□ 1.11
CLN3-225ENST00000566824 STBD1O95210 358 aa22.01■■□□□ 1.11
CLN3-225ENST00000566824 INSRRP14616 1297 aa22.01■■□□□ 1.11
CLN3-225ENST00000566824 NOC4LQ9BVI4 516 aaKnown RBP22.01■■□□□ 1.11
CLN3-225ENST00000566824 PPP1R12CQ9BZL4 782 aa22.01■■□□□ 1.11
CLN3-225ENST00000566824 RGL1Q9NZL6 768 aa22.01■■□□□ 1.11
CLN3-225ENST00000566824 TRPC6Q9Y210 931 aa22.01■■□□□ 1.11
CLN3-225ENST00000566824 EVPLQ92817 2033 aa22■■□□□ 1.11
CLN3-225ENST00000566824 POTEB3A0JP26 581 aa22■■□□□ 1.11
CLN3-225ENST00000566824 TMEM150BA6NC51 233 aa22■■□□□ 1.11
CLN3-225ENST00000566824 ZBTB42B2RXF5 422 aa22■■□□□ 1.11
CLN3-225ENST00000566824 CYP2C18P33260 490 aa22■■□□□ 1.11
CLN3-225ENST00000566824 TECP42680 631 aa22■■□□□ 1.11
CLN3-225ENST00000566824 IGBP1P78318 339 aa22■■□□□ 1.11
CLN3-225ENST00000566824 PPFIA1Q13136 1202 aa22■■□□□ 1.11
CLN3-225ENST00000566824 BECN1Q14457 450 aa22■■□□□ 1.11
CLN3-225ENST00000566824 GRIK4Q16099 956 aa22■■□□□ 1.11
CLN3-225ENST00000566824 POTEBQ6S5H4 581 aa22■■□□□ 1.11
CLN3-225ENST00000566824 RDM1Q8NG50 284 aa22■■□□□ 1.11
CLN3-225ENST00000566824 ATP8B4Q8TF62 1192 aa22■■□□□ 1.11
CLN3-225ENST00000566824 DYDC2Q96IM9 177 aa22■■□□□ 1.11
CLN3-225ENST00000566824 ZDHHC9Q9Y397 364 aa22■■□□□ 1.11
CLN3-225ENST00000566824 PRKCEQ02156 737 aa21.99■■□□□ 1.11
CLN3-225ENST00000566824 EPHA7Q15375 998 aa21.99■■□□□ 1.11
CLN3-225ENST00000566824 TRIM71Q2Q1W2 868 aaKnown RBP21.99■■□□□ 1.11
CLN3-225ENST00000566824 RUFY4Q6ZNE9 571 aa21.99■■□□□ 1.11
CLN3-225ENST00000566824 CKAP2LQ8IYA6 745 aa21.99■■□□□ 1.11
CLN3-225ENST00000566824 BADQ92934 168 aa21.99■■□□□ 1.11
CLN3-225ENST00000566824 ATP6V0A1Q93050 837 aa21.99■■□□□ 1.11
CLN3-225ENST00000566824 CLIC4Q9Y696 253 aa21.99■■□□□ 1.11
CLN3-225ENST00000566824 ZSCAN22P10073 491 aaPredicted RBP21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms