RNA–Protein interactions for RNA: ENST00000564845.5

CHD9-213, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHD9, Length 11,504 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-213ENST00000564845 CCDC194A0A1B0GVG4 234 aa3.68□□□□□ -1.82
CHD9-213ENST00000564845 PSMA3P25788 255 aa3.68□□□□□ -1.82
CHD9-213ENST00000564845 POLR2BP30876 1174 aaKnown RBP3.68□□□□□ -1.82
CHD9-213ENST00000564845 ADALQ6DHV7 355 aa3.68□□□□□ -1.82
CHD9-213ENST00000564845 KRBA2Q6ZNG9 492 aa3.68□□□□□ -1.82
CHD9-213ENST00000564845 SIAH1Q8IUQ4 282 aa3.68□□□□□ -1.82
CHD9-213ENST00000564845 C7orf57Q8NEG2 295 aa3.68□□□□□ -1.82
CHD9-213ENST00000564845 STAG1Q8WVM7 1258 aa3.68□□□□□ -1.82
CHD9-213ENST00000564845 LENG1Q96BZ8 264 aaPredicted RBP3.68□□□□□ -1.82
CHD9-213ENST00000564845 CUEDC2Q9H467 287 aa3.68□□□□□ -1.82
CHD9-213ENST00000564845 GUCA1BQ9UMX6 200 aa3.68□□□□□ -1.82
CHD9-213ENST00000564845 CDHR2Q9BYE9 1310 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 NCK2O43639 380 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 ONECUT3O60422 494 aaPredicted RBP3.67□□□□□ -1.82
CHD9-213ENST00000564845 NCAPHQ15003 741 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 SPA17Q15506 151 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 CERKLQ49MI3 558 aaPredicted RBP3.67□□□□□ -1.82
CHD9-213ENST00000564845 EPC2Q52LR7 807 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 NETO2Q8NC67 525 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 BBOF1Q8ND07 529 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 GFM2Q969S9 779 aaKnown RBP3.67□□□□□ -1.82
CHD9-213ENST00000564845 MRFAP1L1Q96HT8 127 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 TRIM4Q9C037 500 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 FAM124BQ9H5Z6 455 aaPredicted RBP3.67□□□□□ -1.82
CHD9-213ENST00000564845 GNA14O95837 355 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 CCDC33Q8N5R6 958 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 TTC25Q96NG3 672 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 NT5C3AQ9H0P0 336 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 JMJD4Q9H9V9 463 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 ZNF215Q9UL58 517 aaPredicted RBP3.67□□□□□ -1.82
CHD9-213ENST00000564845 MROH7Q68CQ1 1323 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 FAM86B1E9PN63 330 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 NFIBO00712 420 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 FAM86B2P0C5J1 330 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 UBXN1Q04323 297 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 SLC39A14Q15043 492 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 Q3C1V9 767 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 CCDC25Q86WR0 208 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 CCDC117Q8IWD4 279 aaPredicted RBP3.67□□□□□ -1.82
CHD9-213ENST00000564845 TDRD7Q8NHU6 1098 aaKnown RBP3.67□□□□□ -1.82
CHD9-213ENST00000564845 OSCP1Q8WVF1 389 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.67□□□□□ -1.822e-7■■■■■ 50.8
CHD9-213ENST00000564845 XPO5Q9HAV4 1204 aaKnown RBP eCLIP3.67□□□□□ -1.823e-7■■■■■ 34.2
CHD9-213ENST00000564845 ADM5C9JUS6 153 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 TRAF5O00463 557 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 E4F1Q66K89 784 aaPredicted RBP3.67□□□□□ -1.82
CHD9-213ENST00000564845 AADACL2Q6P093 401 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 CYFIP1Q7L576 1253 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 DPH6Q7L8W6 267 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 TRIM11Q96F44 468 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 NOX5Q96PH1 765 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 BRWD3Q6RI45 1802 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 KRT86O43790 486 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 DEXIO95424 95 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 KCNA3P22001 575 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 BARGINQ6ZT62 677 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 CPNE8Q86YQ8 564 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 TPH2Q8IWU9 490 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 ZNF557Q8N988 423 aaPredicted RBP3.67□□□□□ -1.82
CHD9-213ENST00000564845 TTC16Q8NEE8 873 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 IL31RAQ8NI17 732 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 PHF20Q9BVI0 1012 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 FAM129AQ9BZQ8 928 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 KIAA1024Q9UPX6 916 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 BZW2Q9Y6E2 419 aaKnown RBP3.67□□□□□ -1.82
CHD9-213ENST00000564845 TESPA1A2RU30 521 aaPredicted RBP3.67□□□□□ -1.82
CHD9-213ENST00000564845 PARP1P09874 1014 aaKnown RBP3.67□□□□□ -1.82
CHD9-213ENST00000564845 EIF2AK2P19525 551 aaKnown RBP3.67□□□□□ -1.82
CHD9-213ENST00000564845 LMNB1P20700 586 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 CCDC15Q0P6D6 951 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 PSMD6Q15008 389 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 BLIDQ8IZY5 108 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 RIN2Q8WYP3 895 aaPredicted RBP3.67□□□□□ -1.82
CHD9-213ENST00000564845 FAM212AQ96EL1 285 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 KDM3AQ9Y4C1 1321 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 C4BP0C0L5 1744 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 N4BP1O75113 896 aaKnown RBP3.67□□□□□ -1.82
CHD9-213ENST00000564845 TMEM62Q0P6H9 643 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 SF3B3Q15393 1217 aaKnown RBP3.67□□□□□ -1.82
CHD9-213ENST00000564845 UVSSAQ2YD98 709 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 PREPLQ4J6C6 727 aaPredicted RBP3.67□□□□□ -1.82
CHD9-213ENST00000564845 TCERG1LQ5VWI1 586 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 CNKSR1Q969H4 720 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 RCOR1Q9UKL0 485 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 LRRC37AA6NMS7 1700 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 RCCD1A6NED2 376 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 IRF6O14896 467 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 SEMA3EO15041 775 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 AP1G2O75843 785 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 RABGGTBP53611 331 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 DHX9Q08211 1270 aaKnown RBP3.67□□□□□ -1.82
CHD9-213ENST00000564845 PDE4DQ08499 809 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 PLA2G4FQ68DD2 849 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 PATL1Q86TB9 770 aaKnown RBP3.67□□□□□ -1.82
CHD9-213ENST00000564845 TMEM139Q8IV31 216 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 TRPM4Q8TD43 1214 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 CCDC77Q9BR77 488 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 LY75O60449 1722 aa3.67□□□□□ -1.82
CHD9-213ENST00000564845 ZSCAN5CA6NGD5 496 aaPredicted RBP3.67□□□□□ -1.82
CHD9-213ENST00000564845 FOXO6A8MYZ6 492 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms