RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 MAMDC2Q7Z304 686 aaPredicted RBP6.23□□□□□ -1.41
VPS35-205ENST00000563984 CREBRFQ8IUR6 639 aa6.23□□□□□ -1.41
VPS35-205ENST00000563984 FAM26EQ8N5C1 309 aa6.23□□□□□ -1.41
VPS35-205ENST00000563984 TTLL6Q8N841 843 aa6.23□□□□□ -1.41
VPS35-205ENST00000563984 KYQ8NBH2 561 aa6.23□□□□□ -1.41
VPS35-205ENST00000563984 SLC16A11Q8NCK7 471 aa6.23□□□□□ -1.41
VPS35-205ENST00000563984 ZCRB1Q8TBF4 217 aaKnown RBP6.23□□□□□ -1.41
VPS35-205ENST00000563984 TOE1Q96GM8 510 aaKnown RBP6.23□□□□□ -1.41
VPS35-205ENST00000563984 DEPDC7Q96QD5 511 aa6.23□□□□□ -1.41
VPS35-205ENST00000563984 JAM3Q9BX67 310 aa6.23□□□□□ -1.41
VPS35-205ENST00000563984 SPATA6Q9NWH7 488 aaPredicted RBP6.23□□□□□ -1.41
VPS35-205ENST00000563984 DTLQ9NZJ0 730 aa6.23□□□□□ -1.41
VPS35-205ENST00000563984 NTMQ9P121 344 aa6.23□□□□□ -1.41
VPS35-205ENST00000563984 MYOTQ9UBF9 498 aa6.23□□□□□ -1.41
VPS35-205ENST00000563984 PFDN2Q9UHV9 154 aa6.23□□□□□ -1.41
VPS35-205ENST00000563984 TRBV23-1A0A0A0MS06 115 aa6.22□□□□□ -1.41
VPS35-205ENST00000563984 GRK2P25098 689 aa6.22□□□□□ -1.41
VPS35-205ENST00000563984 GRK3P35626 688 aa6.22□□□□□ -1.41
VPS35-205ENST00000563984 SUMO1P63165 101 aaKnown RBP6.22□□□□□ -1.41
VPS35-205ENST00000563984 SLC20A2Q08357 652 aa6.22□□□□□ -1.41
VPS35-205ENST00000563984 CR1LQ2VPA4 569 aa6.22□□□□□ -1.41
VPS35-205ENST00000563984 NT5DC1Q5TFE4 455 aa6.22□□□□□ -1.41
VPS35-205ENST00000563984 ZNF662Q6ZS27 426 aa6.22□□□□□ -1.41
VPS35-205ENST00000563984 OTOP3Q7RTS5 596 aa6.22□□□□□ -1.41
VPS35-205ENST00000563984 AMOTL1Q8IY63 956 aa6.22□□□□□ -1.41
VPS35-205ENST00000563984 CARFQ8N187 725 aa6.22□□□□□ -1.41
VPS35-205ENST00000563984 ARRDC4Q8NCT1 418 aa6.22□□□□□ -1.41
VPS35-205ENST00000563984 PNISRQ8TF01 805 aaKnown RBP6.22□□□□□ -1.41
VPS35-205ENST00000563984 PTPRN2Q92932 1015 aa6.22□□□□□ -1.41
VPS35-205ENST00000563984 SYT3Q9BQG1 590 aa6.22□□□□□ -1.41
VPS35-205ENST00000563984 PPARGC1AQ9UBK2 798 aaKnown RBP6.22□□□□□ -1.41
VPS35-205ENST00000563984 ASH2LQ9UBL3 628 aa6.22□□□□□ -1.41
VPS35-205ENST00000563984 RPGRIP1LQ68CZ1 1315 aa6.22□□□□□ -1.41
VPS35-205ENST00000563984 CCDC194A0A1B0GVG4 234 aa6.21□□□□□ -1.42
VPS35-205ENST00000563984 BLACEA4D250 179 aa6.21□□□□□ -1.42
VPS35-205ENST00000563984 FAM47E-STBD1D6RA91 191 aa6.21□□□□□ -1.42
VPS35-205ENST00000563984 AQP7O14520 342 aa6.21□□□□□ -1.42
VPS35-205ENST00000563984 DIAPH1O60610 1272 aaKnown RBP6.21□□□□□ -1.42
VPS35-205ENST00000563984 WDHD1O75717 1129 aaPredicted RBP6.21□□□□□ -1.42
VPS35-205ENST00000563984 SOD2P04179 222 aa6.21□□□□□ -1.42
VPS35-205ENST00000563984 SARSP49591 514 aaKnown RBP6.21□□□□□ -1.42
VPS35-205ENST00000563984 SPIRE1Q08AE8 756 aa6.21□□□□□ -1.42
VPS35-205ENST00000563984 FERMT3Q86UX7 667 aa6.21□□□□□ -1.42
VPS35-205ENST00000563984 PAIP2Q9BPZ3 127 aaKnown RBP6.21□□□□□ -1.42
VPS35-205ENST00000563984 ALG1Q9BT22 464 aa6.21□□□□□ -1.42
VPS35-205ENST00000563984 SNTG2Q9NY99 539 aa6.21□□□□□ -1.42
VPS35-205ENST00000563984 HSPBP1Q9NZL4 362 aa6.21□□□□□ -1.42
VPS35-205ENST00000563984 KLHL42Q9P2K6 505 aa6.21□□□□□ -1.42
VPS35-205ENST00000563984 KDM2BQ8NHM5 1336 aa6.21□□□□□ -1.42
VPS35-205ENST00000563984 ASXL2Q76L83 1435 aa6.2□□□□□ -1.42
VPS35-205ENST00000563984 MATN3O15232 486 aa6.2□□□□□ -1.42
VPS35-205ENST00000563984 NAT1P18440 290 aa6.2□□□□□ -1.42
VPS35-205ENST00000563984 RPL13P26373 211 aaKnown RBP6.2□□□□□ -1.42
VPS35-205ENST00000563984 THBS2P35442 1172 aa6.2□□□□□ -1.42
VPS35-205ENST00000563984 STAT5AP42229 794 aa6.2□□□□□ -1.42
VPS35-205ENST00000563984 ITGA1P56199 1179 aa6.2□□□□□ -1.42
VPS35-205ENST00000563984 SATB1Q01826 763 aa6.2□□□□□ -1.42
VPS35-205ENST00000563984 SMAD4Q13485 552 aaKnown RBP6.2□□□□□ -1.42
VPS35-205ENST00000563984 FAM209AQ5JX71 171 aa6.2□□□□□ -1.42
VPS35-205ENST00000563984 DNTTIP2Q5QJE6 756 aaKnown RBP6.2□□□□□ -1.42
VPS35-205ENST00000563984 GIMAP6Q6P9H5 292 aa6.2□□□□□ -1.42
VPS35-205ENST00000563984 TEPPQ6URK8 271 aa6.2□□□□□ -1.42
VPS35-205ENST00000563984 TTLL11Q8NHH1 800 aa6.2□□□□□ -1.42
VPS35-205ENST00000563984 PIP4K2CQ8TBX8 421 aa6.2□□□□□ -1.42
VPS35-205ENST00000563984 SORCS2Q96PQ0 1159 aa6.2□□□□□ -1.42
VPS35-205ENST00000563984 DHRS4Q9BTZ2 278 aa6.2□□□□□ -1.42
VPS35-205ENST00000563984 TMX4Q9H1E5 349 aaPredicted RBP6.2□□□□□ -1.42
VPS35-205ENST00000563984 USP40Q9NVE5 1235 aa6.2□□□□□ -1.42
VPS35-205ENST00000563984 ABCF2Q9UG63 623 aa6.2□□□□□ -1.42
VPS35-205ENST00000563984 SRRDQ9UH36 339 aa6.2□□□□□ -1.42
VPS35-205ENST00000563984 FAM221BA6H8Z2 402 aa6.19□□□□□ -1.42
VPS35-205ENST00000563984 FAM153BP0C7A2 387 aa6.19□□□□□ -1.42
VPS35-205ENST00000563984 GNAT1P11488 350 aa6.19□□□□□ -1.42
VPS35-205ENST00000563984 GABREP78334 506 aa6.19□□□□□ -1.42
VPS35-205ENST00000563984 HSP90AB2PQ58FF8 381 aa6.19□□□□□ -1.42
VPS35-205ENST00000563984 FOXB2Q5VYV0 432 aa6.19□□□□□ -1.42
VPS35-205ENST00000563984 UHMK1Q8TAS1 419 aaKnown RBP6.19□□□□□ -1.42
VPS35-205ENST00000563984 DDX1Q92499 740 aaKnown RBP6.19□□□□□ -1.42
VPS35-205ENST00000563984 PMM1Q92871 262 aa6.19□□□□□ -1.42
VPS35-205ENST00000563984 SRPK1Q96SB4 655 aaKnown RBP6.19□□□□□ -1.42
VPS35-205ENST00000563984 SENP7Q9BQF6 1050 aa6.19□□□□□ -1.42
VPS35-205ENST00000563984 PDGFDQ9GZP0 370 aaPredicted RBP6.19□□□□□ -1.42
VPS35-205ENST00000563984 SWAP70Q9UH65 585 aa6.19□□□□□ -1.42
VPS35-205ENST00000563984 CNOT11Q9UKZ1 510 aaKnown RBP6.19□□□□□ -1.42
VPS35-205ENST00000563984 SYNPO2Q9UMS6 1093 aa6.19□□□□□ -1.42
VPS35-205ENST00000563984 TRAF6Q9Y4K3 522 aa6.19□□□□□ -1.42
VPS35-205ENST00000563984 SLC27A2O14975 620 aa6.18□□□□□ -1.42
VPS35-205ENST00000563984 FSHBP01225 129 aa6.18□□□□□ -1.42
VPS35-205ENST00000563984 LRG1P02750 347 aa6.18□□□□□ -1.42
VPS35-205ENST00000563984 C6orf222P0C671 652 aaPredicted RBP6.18□□□□□ -1.42
VPS35-205ENST00000563984 PAK1Q13153 545 aa6.18□□□□□ -1.42
VPS35-205ENST00000563984 ADAM9Q13443 819 aa6.18□□□□□ -1.42
VPS35-205ENST00000563984 HABP4Q5JVS0 413 aaKnown RBP6.18□□□□□ -1.42
VPS35-205ENST00000563984 PRR31Q5SQ13 230 aa6.18□□□□□ -1.42
VPS35-205ENST00000563984 RPAINQ86UA6 219 aa6.18□□□□□ -1.42
VPS35-205ENST00000563984 MTDHQ86UE4 582 aaKnown RBP6.18□□□□□ -1.42
VPS35-205ENST00000563984 STK32CQ86UX6 486 aa6.18□□□□□ -1.42
VPS35-205ENST00000563984 PMFBP1Q8TBY8 1022 aa6.18□□□□□ -1.42
VPS35-205ENST00000563984 EXOC2Q96KP1 924 aa6.18□□□□□ -1.42
VPS35-205ENST00000563984 TMEM209Q96SK2 561 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms