RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 FLRT1Q9NZU1 646 aa15.17■□□□□ 0.02
VPS39-206ENST00000562662 SAMM50Q9Y512 469 aa15.17■□□□□ 0.02
VPS39-206ENST00000562662 PCDHA10Q9Y5I2 948 aa15.17■□□□□ 0.02
VPS39-206ENST00000562662 SORBS3O60504 671 aa15.16■□□□□ 0.02
VPS39-206ENST00000562662 TRPA1O75762 1119 aa15.16■□□□□ 0.02
VPS39-206ENST00000562662 LYPLA2O95372 231 aa15.16■□□□□ 0.02
VPS39-206ENST00000562662 EYA4O95677 639 aa15.16■□□□□ 0.02
VPS39-206ENST00000562662 GGPS1O95749 300 aa15.16■□□□□ 0.02
VPS39-206ENST00000562662 PSMC4P43686 418 aa15.16■□□□□ 0.02
VPS39-206ENST00000562662 QARSP47897 775 aaKnown RBP15.16■□□□□ 0.02
VPS39-206ENST00000562662 AMPD3Q01432 767 aa15.16■□□□□ 0.02
VPS39-206ENST00000562662 CAP1Q01518 475 aa15.16■□□□□ 0.02
VPS39-206ENST00000562662 MORC3Q14149 939 aa15.16■□□□□ 0.02
VPS39-206ENST00000562662 DHX8Q14562 1220 aaKnown RBP15.16■□□□□ 0.02
VPS39-206ENST00000562662 TTLL4Q14679 1199 aa15.16■□□□□ 0.02
VPS39-206ENST00000562662 UGCGQ16739 394 aa15.16■□□□□ 0.02
VPS39-206ENST00000562662 ANO6Q4KMQ2 910 aa15.16■□□□□ 0.02
VPS39-206ENST00000562662 OLFML2BQ68BL8 750 aa15.16■□□□□ 0.02
VPS39-206ENST00000562662 CNNM4Q6P4Q7 775 aa15.16■□□□□ 0.02
VPS39-206ENST00000562662 METTL7BQ6UX53 244 aa15.16■□□□□ 0.02
VPS39-206ENST00000562662 ABHD15Q6UXT9 468 aa15.16■□□□□ 0.02
VPS39-206ENST00000562662 C11orf57Q6ZUT1 292 aaPredicted RBP15.16■□□□□ 0.02
VPS39-206ENST00000562662 SYT2Q8N9I0 419 aaPredicted RBP15.16■□□□□ 0.02
VPS39-206ENST00000562662 TRIML1Q8N9V2 468 aa15.16■□□□□ 0.02
VPS39-206ENST00000562662 SCFD2Q8WU76 684 aa15.16■□□□□ 0.02
VPS39-206ENST00000562662 GSDMAQ96QA5 445 aa15.16■□□□□ 0.02
VPS39-206ENST00000562662 APBA2Q99767 749 aa15.16■□□□□ 0.02
VPS39-206ENST00000562662 ZSWIM4Q9H7M6 989 aa15.16■□□□□ 0.02
VPS39-206ENST00000562662 ANO10Q9NW15 660 aa15.16■□□□□ 0.02
VPS39-206ENST00000562662 DNM3Q9UQ16 869 aa15.16■□□□□ 0.02
VPS39-206ENST00000562662 GSTTP1A0A1W2PQM5 241 aa15.15■□□□□ 0.02
VPS39-206ENST00000562662 RPN1P04843 607 aaKnown RBP15.15■□□□□ 0.02
VPS39-206ENST00000562662 PSAPP07602 524 aa15.15■□□□□ 0.02
VPS39-206ENST00000562662 SUPT20HL2P0C7V6 817 aa15.15■□□□□ 0.02
VPS39-206ENST00000562662 TXNP10599 105 aaKnown RBP15.15■□□□□ 0.02
VPS39-206ENST00000562662 CYP2B6P20813 491 aa15.15■□□□□ 0.02
VPS39-206ENST00000562662 BMP6P22004 513 aa15.15■□□□□ 0.02
VPS39-206ENST00000562662 PSMC5P62195 406 aa15.15■□□□□ 0.02
VPS39-206ENST00000562662 SP3Q02447 781 aa15.15■□□□□ 0.02
VPS39-206ENST00000562662 CCL14Q16627 93 aa15.15■□□□□ 0.02
VPS39-206ENST00000562662 DPCR1Q3MIW9 517 aa15.15■□□□□ 0.02
VPS39-206ENST00000562662 CELF3Q5SZQ8 465 aaKnown RBP15.15■□□□□ 0.02
VPS39-206ENST00000562662 TMEM63BQ5T3F8 832 aa15.15■□□□□ 0.02
VPS39-206ENST00000562662 ISM2Q6H9L7 571 aa15.15■□□□□ 0.02
VPS39-206ENST00000562662 CCDC60Q8IWA6 550 aaPredicted RBP15.15■□□□□ 0.02
VPS39-206ENST00000562662 COPS5Q92905 334 aa15.15■□□□□ 0.02
VPS39-206ENST00000562662 NACC1Q96RE7 527 aa15.15■□□□□ 0.02
VPS39-206ENST00000562662 LRRC27Q9C0I9 530 aa15.15■□□□□ 0.02
VPS39-206ENST00000562662 RBSNQ9H1K0 784 aa15.15■□□□□ 0.02
VPS39-206ENST00000562662 DNAJC25Q9H1X3 360 aa15.15■□□□□ 0.02
VPS39-206ENST00000562662 ABHD16BQ9H3Z7 469 aa15.15■□□□□ 0.02
VPS39-206ENST00000562662 IGSF9BQ9UPX0 1349 aa15.15■□□□□ 0.02
VPS39-206ENST00000562662 IGKV6D-21A0A0A0MT36 114 aa15.14■□□□□ 0.01
VPS39-206ENST00000562662 GOLGA6L3A6NEY3 463 aa15.14■□□□□ 0.01
VPS39-206ENST00000562662 ZBTB39O15060 712 aa15.14■□□□□ 0.01
VPS39-206ENST00000562662 CYP11B2P19099 503 aa15.14■□□□□ 0.01
VPS39-206ENST00000562662 SP4Q02446 784 aa15.14■□□□□ 0.01
VPS39-206ENST00000562662 IRF5Q13568 498 aa15.14■□□□□ 0.01
VPS39-206ENST00000562662 ACVR2BQ13705 512 aa15.14■□□□□ 0.01
VPS39-206ENST00000562662 KCNB1Q14721 858 aa15.14■□□□□ 0.01
VPS39-206ENST00000562662 MIS18BP1Q6P0N0 1132 aa15.14■□□□□ 0.01
VPS39-206ENST00000562662 GPBP1Q86WP2 473 aa15.14■□□□□ 0.01
VPS39-206ENST00000562662 C4orf19Q8IY42 314 aa15.14■□□□□ 0.01
VPS39-206ENST00000562662 PIGOQ8TEQ8 1089 aa15.14■□□□□ 0.01
VPS39-206ENST00000562662 DDX12PQ92771 950 aa15.14■□□□□ 0.01
VPS39-206ENST00000562662 DNAJC19Q96DA6 116 aa15.14■□□□□ 0.01
VPS39-206ENST00000562662 BHMT2Q9H2M3 363 aa15.14■□□□□ 0.01
VPS39-206ENST00000562662 GABBR1Q9UBS5 961 aa15.14■□□□□ 0.01
VPS39-206ENST00000562662 GABRQQ9UN88 632 aa15.14■□□□□ 0.01
VPS39-206ENST00000562662 PCNTO95613 3336 aa15.13■□□□□ 0.01
VPS39-206ENST00000562662 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.13■□□□□ 0.01
VPS39-206ENST00000562662 STBD1O95210 358 aa15.13■□□□□ 0.01
VPS39-206ENST00000562662 SSBP05455 408 aaKnown RBP eCLIP15.13■□□□□ 0.01
VPS39-206ENST00000562662 ADCYAP1R1P41586 468 aa15.13■□□□□ 0.01
VPS39-206ENST00000562662 ASIC1P78348 528 aa15.13■□□□□ 0.01
VPS39-206ENST00000562662 ARHGAP1Q07960 439 aa15.13■□□□□ 0.01
VPS39-206ENST00000562662 KMT5BQ4FZB7 885 aa15.13■□□□□ 0.01
VPS39-206ENST00000562662 ARSHQ5FYA8 562 aa15.13■□□□□ 0.01
VPS39-206ENST00000562662 SWSAP1Q6NVH7 229 aa15.13■□□□□ 0.01
VPS39-206ENST00000562662 PCYT2Q99447 389 aa15.13■□□□□ 0.01
VPS39-206ENST00000562662 MLXIPQ9HAP2 919 aa15.13■□□□□ 0.01
VPS39-206ENST00000562662 RMND1Q9NWS8 449 aa15.13■□□□□ 0.01
VPS39-206ENST00000562662 DBR1Q9UK59 544 aaKnown RBP15.13■□□□□ 0.01
VPS39-206ENST00000562662 ZHX1Q9UKY1 873 aaPredicted RBP15.13■□□□□ 0.01
VPS39-206ENST00000562662 PVALEFA0A1B0GWK0 134 aa15.12■□□□□ 0.01
VPS39-206ENST00000562662 ZNF862O60290 1169 aa15.12■□□□□ 0.01
VPS39-206ENST00000562662 RHOBTB3O94955 611 aa15.12■□□□□ 0.01
VPS39-206ENST00000562662 CAVIN2O95810 425 aa15.12■□□□□ 0.01
VPS39-206ENST00000562662 ZNF865P0CJ78 1059 aaPredicted RBP15.12■□□□□ 0.01
VPS39-206ENST00000562662 XRCC6P12956 609 aaKnown RBP eCLIP15.12■□□□□ 0.01
VPS39-206ENST00000562662 XRCC5P13010 732 aaKnown RBP15.12■□□□□ 0.01
VPS39-206ENST00000562662 PTGS1P23219 599 aa15.12■□□□□ 0.01
VPS39-206ENST00000562662 KIF22Q14807 665 aa15.12■□□□□ 0.01
VPS39-206ENST00000562662 RINT1Q6NUQ1 792 aa15.12■□□□□ 0.01
VPS39-206ENST00000562662 UNC13DQ70J99 1090 aa15.12■□□□□ 0.01
VPS39-206ENST00000562662 DYMQ7RTS9 669 aa15.12■□□□□ 0.01
VPS39-206ENST00000562662 DHX37Q8IY37 1157 aaKnown RBP15.12■□□□□ 0.01
VPS39-206ENST00000562662 FAM200AQ8TCP9 573 aa15.12■□□□□ 0.01
VPS39-206ENST00000562662 SEPT1Q8WYJ6 367 aa15.12■□□□□ 0.01
VPS39-206ENST00000562662 ATP6V0A1Q93050 837 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms